Search

Figure S3. Phylogenetic dendrogram constructed by comparing 16S rRNA gene sequences of isolates 6FIII, 52AIII and 58FIII with Corynebacterium type strain sequences obtained from databases. Sequences were aligned using MEGA6. The tree topology was obtained by using neighbor-joining algorithm with Jukes–Cantor correction. All positions with less than 95% site coverage were eliminated. Bootstrap values above 60%, for 500 replicates, are given at branch points. Bar, 1 inferred nucleotide substitution per 100 nt. (PPTX 95 kb)

Table S1. Pairwise similarity values (%) determined from the alignment used for the construction of the phylogenetic trees from: A. The concatenated nucleotide sequences of mycobacterial 16S rRNA, hsp65 and rpoB of isolates and Type strains selected from the databases; B. 16S rRNA gene nucleotide sequences of isolates and Type strains of the genus Corynebacterium selected from the databases; C. 16S rRNA gene nucleotide sequences of isolates and Type strains of the genus Gordonia selected from the databases. (DOCX 48 kb)

Figure S2. Phylogenetic dendrogram constructed by comparing 16S rRNA gene sequences of isolates 1AIII and 55AIII with Gordonia type strain sequences obtained from databases. Sequences were aligned using MEGA6. The tree topology was obtained by using neighbor-joining algorithm with Jukes–Cantor correction. All positions with less than 95% site coverage were eliminated. Bootstrap values above 60%, for 500 replicates, are given at branch points. Bar, 5 inferred nucleotide substitution per 1000 nt. (PPTX 75 kb)

Figure S1. Phylogenetic dendrogram constructed by comparing 16S rRNA gene sequences of isolates 10AIII, 22DIII, 24AIII, 29AIII and 35AIII with Mycobacterium type strain sequences obtained from GenBank databases. Sequences were aligned using MEGA6. The tree topology was obtained by using neighbor-joining algorithm with Jukes–Cantor correction. All positions with less than 95% site coverage were eliminated. Bootstrap values above 60%, for 500 replicates, are given at branch points. Bar, 1 inferred nucleotide substitution per 100 nt. (PPTX 108 kb)

Figure S4. Phylogenetic analysis of rpoB nucleotide sequences of mycobacterial isolates and 61 selected types strains of the genus Mycobacterium. The tree was created using the neighbor-joining algorithm and the evolutionary distances calculated by Jukes and Cantor method [61]. Bootstrap values above 60%, for 500 replicates, are given at branch points. Bar, 1 inferred nucleotide substitution per 100 nt. (PPTX 92 kb)

Figure S5. Phylogenetic analysis of hsp65 nucleotide sequences of mycobacterial isolates and the 55 selected type strains of the genus Mycobacterium. See Additional file 5: Figure S2 legend for further details. (PPTX 90 kb)