940 results on '"Timothy A. Hall"'
Search Results
2. Magnetic Resonance Thermometry Targeting for Magnetic Resonance–Guided Histotripsy Treatments
- Author
-
Dinank Gupta, Dave Choi, Ning Lu, Steven P. Allen, Timothy L. Hall, Douglas C. Noll, and Zhen Xu
- Subjects
Acoustics and Ultrasonics ,Radiological and Ultrasound Technology ,Biophysics ,Radiology, Nuclear Medicine and imaging - Published
- 2023
- Full Text
- View/download PDF
3. Soft Tissue Aberration Correction for Histotripsy Using Acoustic Emissions From Cavitation Cloud Nucleation and Collapse
- Author
-
Ellen Yeats, Ning Lu, Jonathan R. Sukovich, Zhen Xu, and Timothy L. Hall
- Subjects
Acoustics and Ultrasonics ,Radiological and Ultrasound Technology ,Biophysics ,Radiology, Nuclear Medicine and imaging - Published
- 2023
- Full Text
- View/download PDF
4. Quantification of outflow resistance for ureteral drainage devices used during ureteroscopy
- Author
-
Hyung Joon Kim, Marne M. Louters, Julie J. Dau, Timothy L. Hall, Khurshid R. Ghani, and William W. Roberts
- Subjects
Urology - Published
- 2023
- Full Text
- View/download PDF
5. Multiparametric Quantitative Imaging Biomarkers for Phenotype Classification: A Framework for Development and Validation
- Author
-
Jana G. Delfino, Gene A. Pennello, Huiman X. Barnhart, Andrew J. Buckler, Xiaofeng Wang, Erich P. Huang, Dave L. Raunig, Alexander R. Guimaraes, Timothy J. Hall, Nandita M. deSouza, and Nancy Obuchowski
- Subjects
Radiology, Nuclear Medicine and imaging - Abstract
This manuscript is the third in a five-part series related to statistical assessment methodology for technical performance of multi-parametric quantitative imaging biomarkers (mp-QIBs). We outline approaches and statistical methodologies for developing and evaluating a phenotype classification model from a set of multiparametric QIBs. We then describe validation studies of the classifier for precision, diagnostic accuracy, and interchangeability with a comparator classifier. We follow with an end-to-end real-world example of development and validation of a classifier for atherosclerotic plaque phenotypes. We consider diagnostic accuracy and interchangeability to be clinically meaningful claims for a phenotype classification model informed by mp-QIB inputs, aiming to provide tools to demonstrate agreement between imaging-derived characteristics and clinically established phenotypes. Understanding that we are working in an evolving field, we close our manuscript with an acknowledgement of existing challenges and a discussion of where additional work is needed. In particular, we discuss the challenges involved with technical performance and analytical validation of mp-QIBs. We intend for this manuscript to further advance the robust and promising science of multiparametric biomarker development.
- Published
- 2023
- Full Text
- View/download PDF
6. An X-Ray C-Arm Guided Automatic Targeting System for Histotripsy
- Author
-
Martin G. Wagner, Sarvesh Periyasamy, Ayca Z. Kutlu, Alexander A. Pieper, John F. Swietlik, Tim J. Ziemlewicz, Timothy L. Hall, Zhen Xu, Michael A. Speidel, Fred T. Lee Jr, and Paul F. Laeseke
- Subjects
Biomedical Engineering - Abstract
Histotripsy is an emerging noninvasive, nonionizing and nonthermal focal cancer therapy that is highly precise and can create a treatment zone of virtually any size and shape. Current histotripsy systems rely on ultrasound imaging to target lesions. However, deep or isoechoic targets obstructed by bowel gas or bone can often not be treated safely using ultrasound imaging alone. This work presents an alternative x-ray C-arm based targeting approach and a fully automated robotic targeting system.The approach uses conventional cone beam CT (CBCT) images to localize the target lesion and 2D fluoroscopy to determine the 3D position and orientation of the histotripsy transducer relative to the C-arm. The proposed pose estimation uses a digital model and deep learning-based feature segmentation to estimate the transducer focal point relative to the CBCT coordinate system. Additionally, the integrated robotic arm was calibrated to the C-arm by estimating the transducer pose for four preprogrammed transducer orientations and positions. The calibrated system can then automatically position the transducer such that the focal point aligns with any target selected in a CBCT image.The accuracy of the proposed targeting approach was evaluated in phantom studies, where the selected target location was compared to the center of the spherical ablation zones in post-treatment CBCTs. The mean and standard deviation of the Euclidean distance was 1:4 _ 0:5 mm. The mean absolute error of the predicted treatment radius was 0:5 _ 0:5 mm.CBCT-based histotripsy targeting enables accurate and fully automated treatment without ultrasound guidance.The proposed approach could considerably decrease operator dependency and enable treatment of tumors not visible under ultrasound.
- Published
- 2023
- Full Text
- View/download PDF
7. Multiparametric Data-driven Imaging Markers: Guidelines for Development, Application and Reporting of Model Outputs in Radiomics
- Author
-
Xiaofeng Wang, Gene Pennello, Nandita M. deSouza, Erich P. Huang, Andrew J. Buckler, Huiman X. Barnhart, Jana G. Delfino, David L. Raunig, Lu Wang, Alexander R. Guimaraes, Timothy J. Hall, and Nancy A. Obuchowski
- Subjects
Radiology, Nuclear Medicine and imaging - Abstract
This paper is the fifth in a five-part series on statistical methodology for performance assessment of multi-parametric quantitative imaging biomarkers (mpQIBs) for radiomic analysis. Radiomics is the process of extracting visually imperceptible features from radiographic medical images using data-driven algorithms. We refer to the radiomic features as data-driven imaging markers (DIMs), which are quantitative measures discovered under a data-driven framework from images beyond visual recognition but evident as patterns of disease processes irrespective of whether or not ground truth exists for the true value of the DIM. This paper aims to set guidelines on how to build machine learning models using DIMs in radiomics and to apply and report them appropriately. We provide a list of recommendations, named RANDAM (an abbreviation of "Radiomic ANalysis and DAta Modeling"), for analysis, modeling, and reporting in a radiomic study to make machine learning analyses in radiomics more reproducible. RANDAM contains five main components to use in reporting radiomics studies: design, data preparation, data analysis and modeling, reporting, and material availability. Real case studies in lung cancer research are presented along with simulation studies to compare different feature selection methods and several validation strategies.
- Published
- 2023
- Full Text
- View/download PDF
8. Laser Heating of Fluid With and Without Stone Ablation: In Vitro Assessment
- Author
-
Julie J. Dau, Timothy L. Hall, Adam J. Matzger, Marne M. Louters, Nikta R. Khajeh, Khurshid R. Ghani, and William W. Roberts
- Subjects
Urology - Published
- 2022
- Full Text
- View/download PDF
9. Characterization of Fluid Dynamics and Temperature Profiles During Ureteroscopy with Laser Activation in a Model Ureter
- Author
-
Marne M. Louters, Hyung Joon Kim, Julie J. Dau, Timothy L. Hall, Khurshid R. Ghani, and William W. Roberts
- Subjects
Lasers ,Urology ,Hydrodynamics ,Humans - Published
- 2022
- Full Text
- View/download PDF
10. Pulse-Echo Quantitative US Biomarkers for Liver Steatosis: Toward Technical Standardization
- Author
-
David T. Fetzer, Ivan M. Rosado-Mendez, Michael Wang, Michelle L. Robbin, Arinc Ozturk, Keith A. Wear, Juvenal Ormachea, Timothy A. Stiles, J. Brian Fowlkes, Timothy J. Hall, and Anthony E. Samir
- Subjects
Fatty Liver ,Liver ,Non-alcoholic Fatty Liver Disease ,Humans ,Radiology, Nuclear Medicine and imaging ,Reference Standards ,Magnetic Resonance Imaging ,Biomarkers ,Ultrasonography - Abstract
Excessive liver fat (steatosis) is now the most common cause of chronic liver disease worldwide and is an independent risk factor for cirrhosis and associated complications. Accurate and clinically useful diagnosis, risk stratification, prognostication, and therapy monitoring require accurate and reliable biomarker measurement at acceptable cost. This article describes a joint effort by the American Institute of Ultrasound in Medicine (AIUM) and the RSNA Quantitative Imaging Biomarkers Alliance (QIBA) to develop standards for clinical and technical validation of quantitative biomarkers for liver steatosis. The AIUM Liver Fat Quantification Task Force provides clinical guidance, while the RSNA QIBA Pulse-Echo Quantitative Ultrasound Biomarker Committee develops methods to measure biomarkers and reduce biomarker variability. In this article, the authors present the clinical need for quantitative imaging biomarkers of liver steatosis, review the current state of various imaging modalities, and describe the technical state of the art for three key liver steatosis pulse-echo quantitative US biomarkers: attenuation coefficient, backscatter coefficient, and speed of sound. Lastly, a perspective on current challenges and recommendations for clinical translation for each biomarker is offered.
- Published
- 2023
11. A Modular, Kerf-Minimizing Approach for Therapeutic Ultrasound Phased Array Construction
- Author
-
Greyson E. Stocker, Jonathan E. Lundt, Jonathan R. Sukovich, Ryan M. Miller, Alexander P. Duryea, Timothy L. Hall, and Zhen Xu
- Subjects
Acoustics and Ultrasonics ,Ultrasonic Therapy ,Transducers ,Water ,Electrical and Electronic Engineering ,Instrumentation - Abstract
A novel method for fabricating a modular, kerf-minimizing histotripsy phased array was developed and tested. The method utilizes arbitrarily shaped elements, 3-D printing, water jet cutting, and a thin, 125- [Formula: see text] electrically insulating epoxy coating to maximize aperture utilization while allowing for replacement of individual transducer modules. The method was used to fabricate a 750-kHz truncated circular aperture array (165 mm ×234 mm) transducer with a focal length of 142 mm. The aperture was segmented into 260 arc-shaped modular elements, each approximately 11.5 mm ×11.5 mm, arranged in concentric rings. The resulting aperture utilization was 92%. The full-width-half-maximum (FWHM) focal zone of the array was measured to be 1.6 mm ×1.1 mm ×4.5 mm, and the FWHM electrical steering range was measured to be 38.5 mm ×33 mm 40 mm. The array was estimated to be capable of generating approximately 120-MPa peak negative pressure at the geometric focus. In addition, the array was used to ablate a 5-cm3 volume of tissue with electric focal steering.
- Published
- 2022
- Full Text
- View/download PDF
12. Development of an automated laser drilling algorithm to compare stone ablation patterns from different laser pulse modes
- Author
-
Nikta Rezakahn Khajeh, Timothy L. Hall, Khurshid R. Ghani, and William W. Roberts
- Subjects
Urology - Published
- 2022
- Full Text
- View/download PDF
13. Chilled Irrigation for Control of Temperature Elevation During Ureteroscopic Laser Lithotripsy: In Vivo Porcine Model
- Author
-
Julie J Dau, Timothy L. Hall, William W. Roberts, and Nikta Rezakahn Khajeh
- Subjects
Irrigation ,Thermal injury ,business.industry ,Urology ,medicine.medical_treatment ,TEMPERATURE ELEVATION ,Laser lithotripsy ,Animal science ,Saline solutions ,Tissue damage ,medicine ,In vitro study ,business ,Saline - Abstract
Introduction Multiple studies have shown significant heating of fluid within the urinary collecting system with high-power laser settings. Elevated fluid temperatures may cause thermal injury and tissue damage unless appropriately mitigated. A previous in vitro study demonstrated that chilled (4 °C) irrigation slowed temperature rise, decreased plateau temperature, and lowered thermal dose during laser activation with high-power settings. We sought to evaluate the thermal effects of chilled, room temperature, and warmed irrigation during ureteroscopy with laser activation in an in vivo porcine model. Materials and methods Seven female Yorkshire cross pigs (45-55 kg) were anesthetized and positioned supine. Retrograde ureteroscopy was performed with a thermocouple affixed 5 mm from the distal end of the ureteroscope. In two pigs a holmium:YAG laser was activated for 60 seconds at irrigation rates of 8 ml/min, 12 ml/min, and 15 ml/min with chilled, room temperature, or warmed irrigation. In five pigs core body temperature was recorded for one hour with or without continuous chilled irrigation at 15 ml/min. Results At irrigation rates ≥ 12 ml/min, temperature curves appeared uniformly offset, warmed > room temperature > chilled irrigation. The threshold of thermal tissue injury was reached during laser activation for all irrigation temperatures at 8 ml/min. The threshold was not reached with chilled irrigation at 12 ml/min or 15 ml/min, or with room temperature irrigation at 15 ml/min. The threshold was exceeded at all irrigation rates with warmed irrigation. There was no significant change in core body temperature after delivering chilled irrigation at 15 ml/min compared with no irrigation for 60 minutes. Conclusion Irrigation with chilled saline solution during ureteroscopic laser lithotripsy slows temperature rise, lowers peak temperature, and lengthens the time to thermal injury compared to irrigation with room temperature or warmed saline solutions. Core body temperature was not significantly impacted by chilled irrigation.
- Published
- 2022
- Full Text
- View/download PDF
14. MP26-19 CHARACTERIZATION OF THULIUM FIBER LASER PULSES: DIFFERENCES BETWEEN SHORT AND LONG PULSE
- Author
-
Ron Marom, William W. Roberts, Timothy L. Hall, John Robinson, Adam J. Matzger, and Khurshid R. Ghani
- Subjects
Urology - Published
- 2023
- Full Text
- View/download PDF
15. MP68-17 IN-VIVO THERMAL SAFETY VALIDATION OF URETEROSCOPY LASER POWER – IRRIGATION RATE PARAMETER PAIRS
- Author
-
Ron Marom, Julie J. Dau, Khurshid R. Ghani, Timothy L. Hall, and William W. Roberts
- Subjects
Urology - Published
- 2023
- Full Text
- View/download PDF
16. MP68-04 IN-VIVO PORCINE INTRARENAL PRESSURE-IRRIGATION FLOW CHARACTERIZATION AT VARIOUS OUTLET RESISTANCES
- Author
-
Ron Marom, Julie J. Dau, Marne M. Louters, Khurshid R. Ghani, Timothy L. Hall, and William W. Roberts
- Subjects
Urology - Published
- 2023
- Full Text
- View/download PDF
17. MP68-05 STONE ABLATION CHARACTERISTICS OF THULIUM FIBER LASER WHEN WORKING FROM DISTANCE: MIND THE GAP
- Author
-
Ron Marom, William W. Roberts, Timothy L. Hall, John Robinson, Adam J. Matzger, and Khurshid R. Ghani
- Subjects
Urology - Published
- 2023
- Full Text
- View/download PDF
18. Optical coherence tomography of human fetal membrane sub-layers during dynamic loading
- Author
-
Kayvan Samimi, Emmanuel Contreras Guzman, May Wu, Lindsey Carlson, Helen Feltovich, Timothy J. Hall, Kristin M. Myers, Michelle L. Oyen, and Melissa C. Skala
- Abstract
Fetal membranes have important mechanical and antimicrobial roles in maintaining pregnancy. However, the small thickness (ex vivoproperties of human fetal membranes under dynamic loading. A saline inflation test was incorporated into an OCT system, and tests were performed on n=33 and n=32 human samples obtained from labored and C-section donors, respectively. Fetal membranes were collected in near-cervical and near-placental locations. Histology, endogenous two photon fluorescence microscopy, and second harmonic generation microscopy were used to identify sources of contrast in OCT images of fetal membranes. A convolutional neural network was trained to automatically segment fetal membrane sub-layers with high accuracy (Dice coefficients >0.8). Intact amniochorion bilayer and separated amnion and chorion were individually loaded, and the amnion layer was identified as the load-bearing layer within intact fetal membranes for both labored and C-section samples, consistent with prior work. Additionally, the rupture pressure and thickness of the amniochorion bilayer from the near-placental region were greater than those of the near-cervical region for labored samples. This location-dependent change in fetal membrane thickness was not attributable to the load-bearing amnion layer. Finally, the initial phase of the loading curve indicates that amniochorion bilayer from the near-cervical region is strain-hardened compared to the near-placental region in labored samples. Overall, these studies fill a gap in our understanding of the structural and mechanical properties of human fetal membranes at high resolution under dynamic loading events.
- Published
- 2023
- Full Text
- View/download PDF
19. Laser operator duty cycle effect on temperature and thermal dose: in-vitro study
- Author
-
Marne M. Louters, Julie J. Dau, Timothy L. Hall, Khurshid R. Ghani, and William W. Roberts
- Subjects
Urology - Published
- 2022
- Full Text
- View/download PDF
20. Transcranial Magnetic Resonance-Guided Histotripsy for Brain Surgery: Pre-clinical Investigation
- Author
-
Neeraj Chaudhary, Aditya S. Pandey, Badih J Daou, Jonathan R. Sukovich, Dinank Gupta, Dave Choi, Adam Fox, Timothy L. Hall, Zhen Xu, Douglas C. Noll, Ning Lu, John Snell, and Sandra Camelo-Piragua
- Subjects
medicine.medical_specialty ,Magnetic Resonance Spectroscopy ,Acoustics and Ultrasonics ,Swine ,medicine.medical_treatment ,Radiography ,Transducers ,Biophysics ,Article ,Histotripsy ,In vivo ,medicine ,Animals ,Radiology, Nuclear Medicine and imaging ,Craniotomy ,Radiological and Ultrasound Technology ,medicine.diagnostic_test ,Therapeutic ultrasound ,business.industry ,Skull ,Brain ,Magnetic resonance imaging ,Ablation ,Magnetic Resonance Imaging ,Surgery ,High-Intensity Focused Ultrasound Ablation ,business ,Fiducial marker - Abstract
Histotripsy has been previously applied to target various cranial locations in vitro through an excised human skull. Recently, a transcranial magnetic resonance (MR)-guided histotripsy (tcMRgHt) system was developed, enabling pre-clinical investigations of tcMRgHt for brain surgery. To determine the feasibility of in vivo transcranial histotripsy, tcMRgHt treatment was delivered to eight pigs using a 700-kHz, 128-element, MR-compatible phased-array transducer inside a 3-T magnetic resonance imaging (MRI) scanner. After craniotomy to open an acoustic window to the brain, histotripsy was applied through an excised human calvarium to target the inside of the pig brain based on pre-treatment MRI and fiducial markers. MR images were acquired pre-treatment, immediately post-treatment and 2–4 h post-treatment to evaluate the acute treatment outcome. Successful histotripsy ablation was observed in all pigs. The MR-evident lesions were well confined within the targeted volume, without evidence of excessive brain edema or hemorrhage outside of the target zone. Histology revealed tissue homogenization in the ablation zones with a sharp demarcation between destroyed and unaffected tissue, which correlated well with the radiographic treatment zones on MRI. These results are the first to support the in vivo feasibility of tcMRgHt in the pig brain, enabling further investigation of the use of tcMRgHt for brain surgery.
- Published
- 2022
- Full Text
- View/download PDF
21. Pelvicaliceal Volume and Fluid Temperature Elevation During Laser Lithotripsy
- Author
-
Timothy L. Hall, William W. Roberts, Khurshid R. Ghani, and Nikta Rezakahn Khajeh
- Subjects
medicine.diagnostic_test ,business.industry ,Urology ,medicine.medical_treatment ,Temperature ,Elevation ,food and beverages ,Lasers, Solid-State ,Lithotripsy, Laser ,Collection system ,Laser ,Laser lithotripsy ,Kidney Calices ,law.invention ,Volume (thermodynamics) ,law ,Ureteroscopes ,Ureteroscopy ,medicine ,Humans ,Fluid temperature ,business ,Thermal dose ,Biomedical engineering - Abstract
Background: While high-power laser systems facilitate successful ureteroscopic treatment of larger and more complex stones, they can substantially elevate collecting system fluid temperatures with ...
- Published
- 2022
- Full Text
- View/download PDF
22. Impact of Pulse Mode on Dusting Effect for Holmium Laser Lithotripsy: In Vitro Evaluation With Calcium Oxalate Monohydrate Stones
- Author
-
Nikta Rezakahn Khajeh, Kristian M Black, Khurshid R. Ghani, Stephanie Daignault-Newton, William W. Roberts, and Timothy L. Hall
- Subjects
Long pulse ,Calcium Oxalate ,medicine.diagnostic_test ,business.industry ,Pulse (signal processing) ,Urology ,medicine.medical_treatment ,Holmium laser ,Lasers, Solid-State ,Lithotripsy ,Lithotripsy, Laser ,Laser lithotripsy ,Kidney Calculi ,Dogs ,medicine ,Animals ,Ureteroscopy ,Pulse mode ,business ,CALCIUM OXALATE MONOHYDRATE ,Biomedical engineering - Abstract
To assess the distribution of stone fragments (0.25-2 mm) after in vitro dusting laser lithotripsy with varying pulse modes using canine calcium oxalate monohydrate (COM) stones. Recent work demonstrates that fragments0.25 mm are ideal for dusting, and we hypothesized advanced pulse modes might improve this outcome.A 3D-printed bulb was used as a calyceal model containing a single COM stone. A 230-core fiber (Lumenis) was passed through a ureteroscope (LithoVue, Boston Scientific). Contact laser lithotripsy by a single operator was performed with dusting settings (0.5J x 30Hz; Moses Pulse120H) to deliver 1kJ of energy for each trial. Short pulse (SP), long pulse (LP), Moses Distance (MD) and Moses Contact (MC) modes were tested with 5 trials for each parameter. Primary outcome was mass of fragments0.25,0.5,1, and2 mm. Laser fiber tip degradation was measured using a digital caliper.Mass of stone fragments0.25 mm varied from 34.6%-43.0% depending on the pulse mode, with no statistically significant differences between modes. MC (98.5%) produced a greater mass of fragments2 mm compared to LP (86.1%; P = .046) but not SP (92.0%). Significantly less fiber tip burnback occurred with MC (0.29 mm) and MD (0.28 mm), compared to SP (0.83 mm; P.0005).Regardless of pulse mode, greater than one-third of the mass of COM stone was reduced to fragments0.25 mm following contact laser lithotripsy. MC produced a greater mass of fragments2 mm compared to LP and demonstrated less fiber tip burnback compared to SP.
- Published
- 2022
- Full Text
- View/download PDF
23. Itinerancy
- Author
-
Timothy D. Hall
- Abstract
This chapter discusses how eighteenth-century evangelical leaders adapted the practice of itinerant preaching to make it a primary method for spreading their message of New Birth through repentance and faith in Jesus. Itinerancy was a controversial category of preaching, provoking concerns about social disruption and ecclesiastical authority within local communities as well as questions concerning the authenticity of such preachers themselves. Nevertheless, itinerancy was readily adaptable to the more open, mobile, commercial society that the eighteenth-century British Empire was becoming. The Anglican itinerant George Whitefield and his associates learned to use it in concert with techniques in print and advertising to become a very powerful means of spreading their message. The growing practice of itinerancy in turn transformed the religious landscape of the empire into one more fluid, open, interdenominational, and egalitarian than had obtained under the parochial system that had served to structure both ecclesial and social order.
- Published
- 2022
- Full Text
- View/download PDF
24. Patterns of Laser Activation During Ureteroscopic Lithotripsy: Effects on Caliceal Fluid Temperature and Thermal Dose
- Author
-
Julie J Dau, Timothy L. Hall, Sami E Majdalany, John M. Hollingsworth, Khurshid R. Ghani, Sapan N. Ambani, Casey A. Dauw, Ali H Aldoukhi, and William W. Roberts
- Subjects
medicine.diagnostic_test ,business.industry ,Urology ,medicine.medical_treatment ,Temperature ,Lasers, Solid-State ,Lithotripsy, Laser ,Laser ,Laser lithotripsy ,Kidney Calices ,law.invention ,law ,Ureteroscopy ,Humans ,Medicine ,Ureteroscopic lithotripsy ,Experimental Endourology ,Fluid temperature ,Thermal dose ,business ,Biomedical engineering - Abstract
Introduction: Characterizing patterns of laser activation is important for assessing thermal dose during laser lithotripsy. The objective of this study was twofold: first, to quantify the range of operator duty cycle (ODC) and pedal activation time during clinical laser lithotripsy procedures, and second, to determine thermal dose in an in vitro caliceal model when 1200 J of energy was applied with different patterns of 50% ODC for 60 seconds. Methods: Data from laser logs of ureteroscopy cases performed over a 3-month period were used to calculate ODC (lasing time/lithotripsy time). Temporal and rolling 1-minute average power tracings were generated for each case. In vitro experiments were conducted using a 21 mm diameter glass bulb in a 37°C water bath, simulating a renal calix. A LithoVue ureteroscope with attached thermocouple was inserted and 8 mL/min irrigation was delivered with a 242 μm laser fiber within the working channel. In total, 1200 J of laser energy was applied in five different patterns at 20 W average power for 60 seconds. Thermal dose was calculated using the Sapareto and Dewey t(43) method. Results: A total of 63 clinical cases were included in the analysis. Mean ODC was 32% overall and 63% during the 1-minute of greatest energy delivery. Mean time of pedal activation was 3.6 seconds. In vitro studies revealed longer pedal activation times produced higher peak temperature and thermal dose. Thermal injury threshold was reached in 9 seconds when 40 W was applied at 50% ODC with laser activation patterns of 30 seconds on/off and 15 seconds on/off. Conclusion: ODC was quantified from clinical laser lithotripsy cases: 32% overall and 63% during 1-minute of peak power. Time of pedal activation is an important factor contributing to fluid heating and thermal dose. Awareness of these concepts is necessary to reduce risk of thermal injury during laser lithotripsy procedures.
- Published
- 2021
- Full Text
- View/download PDF
25. Transcostal Histotripsy Ablation in an In Vivo Acute Hepatic Porcine Model
- Author
-
Timothy J. Ziemlewicz, Allison C. Rodgers, Emily A. Knott, Annie M. Zlevor, Timothy L. Hall, Eli Vlaisavljevich, John F. Swietlik, Xaiofei Zhang, Fred T. Lee, Zhen Xu, Katherine C. Longo, and Paul F. Laeseke
- Subjects
medicine.medical_specialty ,Lung ,Ablation Techniques ,business.industry ,medicine.medical_treatment ,Ultrasound ,Ablation ,Histotripsy ,medicine.anatomical_structure ,Edema ,medicine ,Radiology, Nuclear Medicine and imaging ,Histopathology ,medicine.symptom ,Cardiology and Cardiovascular Medicine ,Nuclear medicine ,business ,Ablation zone - Abstract
To determine whether histotripsy can create human-scale transcostal ablations in porcine liver without causing severe thermal wall injuries along the beam path. Histotripsy was applied to the liver using a preclinical prototype robotic system through a transcostal window in six female swine. A 3.0 cm spherical ablation zone was prescribed. Duration of treatment (75 min) was longer than a prior subcostal treatment study (24 min, 15 s) to minimize beam path heating. Animals then underwent contrast-enhanced MRI, necropsy, and histopathology. Images and tissue were analyzed for ablation zone size, shape, completeness of necrosis, and off-target effects. Ablation zones demonstrated complete necrosis with no viable tissue remaining in 6/6 animals by histopathology. Ablation zone volume was close to prescribed (13.8 ± 1.8 cm3 vs. prescribed 14.1 cm3). Edema was noted in the body wall overlying the ablation on T2 MRI in 5/5 (one animal did not receive MRI), though there was no gross or histologic evidence of injury to the chest wall at necropsy. At gross inspection, lung discoloration in the right lower lobe was present in 5/6 animals (mean size: 1 × 2 × 4 cm) with alveolar hemorrhage, preservation of blood vessels and bronchioles, and minor injuries to pneumocytes noted at histology. Transcostal hepatic histotripsy ablation appears feasible, effective, and no severe injuries were identified in an acute porcine model when prolonged cooling time is added to minimize body wall heating.
- Published
- 2021
- Full Text
- View/download PDF
26. Effect of Chilled Irrigation on Caliceal Fluid Temperature and Time to Thermal Injury Threshold During Laser Lithotripsy: In Vitro Model
- Author
-
William W. Roberts, Timothy L. Hall, Khurshid R. Ghani, Adam D. Maxwell, and Julie J Dau
- Subjects
Thermal injury ,medicine.diagnostic_test ,business.industry ,Urology ,medicine.medical_treatment ,030232 urology & nephrology ,Lithotripsy ,Laser ,Laser lithotripsy ,law.invention ,In vitro model ,03 medical and health sciences ,0302 clinical medicine ,law ,030220 oncology & carcinogenesis ,medicine ,Fluid temperature ,Ureteroscopy ,Thermal dose ,business ,Biomedical engineering - Abstract
Introduction: High-power lasers (100–120 W) have widely expanded the available settings for laser lithotripsy and facilitated tailoring of treatment for individual cases. Previous in vitro and in v...
- Published
- 2021
- Full Text
- View/download PDF
27. Determining fast-S and slow-S propagation directions with SV-P data produced by buried explosives and recorded with vertical geophones
- Author
-
Timothy M. Hall, Bob A. Hardage, Allen Modroo, Mark Kelley, Chris Hall, Valerie Smith, and Mike Graul
- Subjects
Geophysics ,010504 meteorology & atmospheric sciences ,Explosive material ,Geophone ,Geology ,Reflection seismology ,010502 geochemistry & geophysics ,Anisotropy ,01 natural sciences ,Seismology ,0105 earth and related environmental sciences - Abstract
We have evaluated the concept of practicing S-wave reflection seismology with legacy 3D seismic data generated by a P-wave source and recorded with only vertical geophones. This type of S-wave imaging is based on the principle that seismic P-wave sources not only produce a downgoing illuminating P wavefield, but they also simultaneously produce a downgoing illuminating SV wavefield that, in almost all cases, is suitable for S-wave reflection imaging. The S-mode used in this study is the SV-P, or converted-P, mode. This mode involves a downgoing illuminating SV wavefield and an upgoing reflected P-mode that is recorded by vertical geophones. In flat-layered stratigraphy, the lengths of the SV and P raypaths in SV-P imaging are identical to the lengths of the SV and P raypaths in P-SV imaging with P-sources and 3C geophones. P-SV imaging of deep rocks has been practiced for more than two decades; SV-P imaging is a new concept. SV-P data should provide the same options for investigating deep rocks as do P-SV data. We have determined one of the equivalences between SV-P data extracted from vertical-geophone data and P-SV data extracted from horizontal geophones: that both modes react to azimuth-dependent variations in the S velocity in anisotropic rocks. Azimuthal variations in the SV-P traveltime can be used to define the polarization direction of the fast-S-wave mode, which is also the azimuth of the maximum horizontal stress (SHmax). Our investigation demonstrates a noninvasive method for monitoring changes in the SHmax azimuth across a CO2 storage reservoir, or any targeted porous rock, as fluids are cycled into, and then out of, that rock’s pore space.
- Published
- 2021
- Full Text
- View/download PDF
28. Analytic Global Regularized Backscatter Quantitative Ultrasound
- Author
-
Noushin Jafarpisheh, Timothy J. Hall, Ivan M. Rosado-Mendez, and Hassan Rivaz
- Subjects
Acoustics and Ultrasonics ,Backscatter ,Phantoms, Imaging ,Computer science ,Attenuation ,Function (mathematics) ,System of linear equations ,01 natural sciences ,Article ,Imaging phantom ,Dynamic programming ,Speckle pattern ,0103 physical sciences ,Line (geometry) ,Least-Squares Analysis ,Electrical and Electronic Engineering ,010301 acoustics ,Instrumentation ,Algorithm ,Algorithms ,Ultrasonography - Abstract
Although a variety of techniques have been developed to reduce the appearance of B-mode speckle, quantitative ultrasound (QUS) aims at extracting the hidden properties of the tissue. Herein, we propose two novel techniques to accurately and precisely estimate two important QUS parameters, namely, the average attenuation coefficient and the backscatter coefficient. Both the techniques optimize a cost function that incorporates data and continuity constraint terms, which we call AnaLytical Global rEgularized BackscatteR quAntitative ultrasound (ALGEBRA). We propose two versions of ALGEBRA, namely, 1-D- and 2-D-ALGEBRA. In 1-D-ALGEBRA, the regularized cost function is formulated in the axial direction, and the QUS parameters are calculated for one line of radio frequency (RF) echo data. In 2-D-ALGEBRA, the regularized cost function is formulated for the entire image, and the QUS parameters throughout the image are estimated simultaneously. This simultaneous optimization allows 2-D-ALGEBRA to "see" all the data before estimating the QUS parameters. In both the methods, we efficiently optimize the cost functions by casting it as a sparse linear system of equations. As a result of this efficient optimization, 1-D-ALGEBRA and 2-D-ALGEBRA are, respectively, 600 and 300 times faster than optimization using the dynamic programming (DP) method previously proposed by our group. In addition, the proposed technique has fewer input parameters that require manual tuning. Our results demonstrate that the proposed ALGEBRA methods substantially outperform least-square and DP methods in estimating the QUS parameters in phantom experiments.
- Published
- 2021
- Full Text
- View/download PDF
29. Strike Rate: Analysis of Laser Fiber to Stone Distance During Different Modes of Laser Lithotripsy
- Author
-
Khurshid R. Ghani, William W. Roberts, Timothy L. Hall, and Ali H Aldoukhi
- Subjects
medicine.diagnostic_test ,business.industry ,Urology ,medicine.medical_treatment ,030232 urology & nephrology ,Laser ,Laser lithotripsy ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Optics ,law ,030220 oncology & carcinogenesis ,medicine ,Laser fiber ,Ureteroscopy ,business - Abstract
Introduction: Different techniques of laser lithotripsy (fragmentation, dusting, and popcorning) are commonly used during ureteroscopy. The efficiency of a single laser pulse is dependent on minimi...
- Published
- 2021
- Full Text
- View/download PDF
30. Introduction to Multiparametric QIB Series
- Author
-
Nancy A Obuchowski and Timothy J Hall
- Subjects
Radiology, Nuclear Medicine and imaging - Published
- 2023
- Full Text
- View/download PDF
31. Determination of Irrigation Flowrate During Flexible Ureteroscopy: Methods for Calculation Using Renal Pelvis Pressure
- Author
-
Nikta Rezakahn Khajeh, Timothy L. Hall, Khurshid R. Ghani, and William W. Roberts
- Subjects
Urology ,Ureteroscopes ,Ureteroscopy ,Humans ,Kidney Pelvis ,Therapeutic Irrigation ,Lithotripsy, Laser - Published
- 2022
32. Laser Heating of Fluid With and Without Stone Ablation
- Author
-
Julie J, Dau, Timothy L, Hall, Adam J, Matzger, Marne M, Louters, Nikta R, Khajeh, Khurshid R, Ghani, and William W, Roberts
- Subjects
Lasers ,Humans - Published
- 2022
33. Multiparametric Quantitative Imaging Biomarker as a Multivariate Descriptor of Health: A Roadmap
- Author
-
David L. Raunig, Gene A. Pennello, Jana G. Delfino, Andrew J. Buckler, Timothy J. Hall, Alexander R. Guimaraes, Xiaofeng Wang, Erich P. Huang, Huiman X. Barnhart, Nandita deSouza, and Nancy Obuchowski
- Subjects
Radiology, Nuclear Medicine and imaging - Abstract
Multiparametric quantitative imaging biomarkers (QIBs) offer distinct advantages over single, univariate descriptors because they provide a more complete measure of complex, multidimensional biological systems. In disease, where structural and functional disturbances occur across a multitude of subsystems, multivariate QIBs are needed to measure the extent of system malfunction. This paper, the first Use Case in a series of articles on multiparameter imaging biomarkers, considers multiple QIBs as a multidimensional vector to represent all relevant disease constructs more completely. The approach proposed offers several advantages over QIBs as multiple endpoints and avoids combining them into a single composite that obscures the medical meaning of the individual measurements. We focus on establishing statistically rigorous methods to create a single, simultaneous measure from multiple QIBs that preserves the sensitivity of each univariate QIB while incorporating the correlation among QIBs. Details are provided for metrological methods to quantify the technical performance. Methods to reduce the set of QIBs, test the superiority of the mp-QIB model to any univariate QIB model, and design study strategies for generating precision and validity claims are also provided. QIBs of Alzheimer's Disease from the ADNI merge data set are used as a case study to illustrate the methods described.
- Published
- 2022
34. A Framework for Evaluating the Technical Performance of Multiparameter Quantitative Imaging Biomarkers (mp-QIBs)
- Author
-
Nancy A Obuchowski, Erich Huang, Nandita M deSouza, David Raunig, Jana Delfino, Andrew Buckler, Charles Hatt, Xiaofeng Wang, Chaya Moskowitz, Alexander Guimaraes, Maryellen Giger, Timothy J Hall, Paul Kinahan, and Gene Pennello
- Subjects
Radiology, Nuclear Medicine and imaging - Abstract
Multiparameter quantitative imaging incorporates anatomical, functional, and/or behavioral biomarkers to characterize tissue, detect disease, identify phenotypes, define longitudinal change, or predict outcome. Multiple imaging parameters are sometimes considered separately but ideally are evaluated collectively. Often, they are transformed as Likert interpretations, ignoring the correlations of quantitative properties that may result in better reproducibility or outcome prediction. In this paper we present three use cases of multiparameter quantitative imaging: i) multidimensional descriptor, ii) phenotype classification, and iii) risk prediction. A fourth application based on data-driven markers from radiomics is also presented. We describe the technical performance characteristics and their metrics common to all use cases, and provide a structure for the development, estimation, and testing of multiparameter quantitative imaging. This paper serves as an overview for a series of individual articles on the four applications, providing the statistical framework for multiparameter imaging applications in medicine.
- Published
- 2022
35. U.S. Tropical Cyclone Activity in the 2030s Based on Projected Changes in Tropical Sea Surface Temperature
- Author
-
Timothy M. Hall, James R. McMahon, James P. Kossin, and Terence Thompson
- Subjects
Atmospheric Science ,Sea surface temperature ,Climatology ,Environmental science ,Tropical cyclone - Abstract
We use a statistical tropical cyclone (TC) model, the North Atlantic Stochastic Hurricane Model (NASHM), in combination with sea surface temperature (SST) projections from climate models, to estimate regional changes in U.S. TC activity into the 2030s. NASHM is trained on historical variations in TC characteristics with two SST indices: global–tropical mean SST and the difference between tropical North Atlantic Ocean (NA) SST and the rest of the global tropics, often referred to as “relative SST.” Testing confirms the model’s ability to reproduce historical U.S. TC activity as well as to make skillful predictions. When NASHM is driven by SST projections into the 2030s, overall NA annual TC counts increase, and the fractional increase is the greatest at the highest wind intensities. However, an eastward anomaly in mean TC tracks and an eastward shift in TC formation region result in a geographically varied signal in U.S. coastal activity. Florida’s Gulf Coast is projected to see significant increases in TC activity relative to the long-term historical mean, and these increases are fractionally greatest at the highest intensities. By contrast, the northwestern U.S. Gulf Coast and the U.S. East Coast will see little change.
- Published
- 2021
- Full Text
- View/download PDF
36. Burnback: the role of pulse duration and energy on fiber-tip degradation during high-power laser lithotripsy
- Author
-
William W. Roberts, Khurshid R. Ghani, Timothy L. Hall, Kristian M Black, Brandon A Levin, and Ali H Aldoukhi
- Subjects
Materials science ,Pulse (signal processing) ,medicine.medical_treatment ,Photodetector ,Pulse duration ,chemistry.chemical_element ,030206 dentistry ,Dermatology ,Lithotripsy ,Laser ,Laser lithotripsy ,law.invention ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,chemistry ,law ,medicine ,Surgery ,Fiber ,Holmium ,Biomedical engineering - Abstract
High-power holmium lasers have become popular for ureteroscopic laser lithotripsy and dusting. Our aim was to investigate the effect of pulse duration and pulse energy on fiber-tip degradation when using high-power settings for popcorn lithotripsy. BegoStones were fragmented in a glass bulb to simulate renal calyx, using a 120 W Ho:YAG laser. A 242 μm fiber was placed via the ureteroscope 2 mm distance from stones (popcorn model). To assess the effect of pulse duration on fiber-tip degradation, long pulse (LP) and short pulse (SP) settings were compared at settings of 1.0Jx20Hz (20 W), 0.5Jx70Hz (35 W), and 1.0Jx40Hz (40 W). To assess the effect of pulse energy on tip degradation, 40 W SP settings (0.5Jx80Hz, 0.8Jx50Hz, and 1.0Jx40Hz) were tested. Pulse duration was measured using a photodetector and peak power was then calculated using the pulse duration and pulse energy. Experiments were conducted for 4 min. Fiber-tip length was measured before and after using a digital caliper. Fiber-tip degradation was least when using LP for all settings tested (p
- Published
- 2021
- Full Text
- View/download PDF
37. Radiological Society of North America/Quantitative Imaging Biomarker Alliance Shear Wave Speed Bias Quantification in Elastic and Viscoelastic Phantoms
- Author
-
Brian S. Garra, Pengfei Song, Timothy J. Hall, Todd N. Erpelding, Stephen J. Rosenzweig, Stephen A. McAleavey, Mark L. Palmeri, Matthew W. Urban, Richard L. Ehman, Gilles Guenette, Glen McLaughlin, Mathieu Couade, Véronique Miette, Shigao Chen, Ted Lynch, Michael MacDonald, Hua Xie, Paul L. Carson, Manish Dhyani, D. Cody Morris, Lindsey C. Carlson, Yoko Okamura, Derek Y. Chan, Yufeng Deng, Arinc Ozturk, Michael H. Wang, Zaegyoo Hah, Nancy A. Obuchowski, Richard G. Barr, Ned C. Rouze, Jun Chen, Anthony E. Samir, Vijay Shamdasani, Shana Fielding, Keith A. Wear, Andy Milkowski, David J. Napolitano, Bo Qiang, Kathryn R. Nightingale, Ravi Managuli, Siyun Yang, Gee Albert, Kingshuk Roy Choudhury, and Yuling Chen
- Subjects
030219 obstetrics & reproductive medicine ,Radiological and Ultrasound Technology ,Phantoms, Imaging ,business.industry ,Ultrasound ,Article ,Elasticity ,Viscoelasticity ,Imaging phantom ,030218 nuclear medicine & medical imaging ,Magnetic resonance elastography ,Shear (sheet metal) ,03 medical and health sciences ,0302 clinical medicine ,North America ,Elasticity Imaging Techniques ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Ultrasonic sensor ,Elasticity (economics) ,business ,Acoustic radiation force ,Biomarkers ,Biomedical engineering - Abstract
OBJECTIVES—: To quantify the bias of shear wave speed (SWS) measurements between different commercial ultrasonic shear elasticity systems and a magnetic resonance elastography (MRE) system in elastic and viscoelastic phantoms. METHODS—: Two elastic phantoms, representing healthy through fibrotic liver, were measured with 5 different ultrasound platforms, and 3 viscoelastic phantoms, representing healthy through fibrotic liver tissue, were measured with 12 different ultrasound platforms. Measurements were performed with different systems at different sites, at 3 focal depths, and with different appraisers. The SWS bias across the systems was quantified as a function of the system, site, focal depth, and appraiser. A single MRE research system was also used to characterize these phantoms using discrete frequencies from 60 to 500 Hz. RESULTS—: The SWS from different systems had mean difference 95% confidence intervals of ±0.145 m/s (±9.6%) across both elastic phantoms and ± 0.340 m/s (±15.3%) across the viscoelastic phantoms. The focal depth and appraiser were less significant sources of SWS variability than the system and site. Magnetic resonance elastography best matched the ultrasonic SWS in the viscoelastic phantoms using a 140 Hz source but had a − 0.27 ± 0.027-m/s (−12.2% ± 1.2%) bias when using the clinically implemented 60-Hz vibration source. CONCLUSIONS—: Shear wave speed reconstruction across different manufacturer systems is more consistent in elastic than viscoelastic phantoms, with a mean difference bias of < ±10% in all cases. Magnetic resonance elastographic measurements in the elastic and viscoelastic phantoms best match the ultrasound systems with a 140-Hz excitation but have a significant negative bias operating at 60 Hz. This study establishes a foundation for meaningful comparison of SWS measurements made with different platforms.
- Published
- 2021
- Full Text
- View/download PDF
38. Histotripsy: the first noninvasive, non-ionizing, non-thermal ablation technique based on ultrasound
- Author
-
Fred T. Lee, Eli Vlaisavljevich, Timothy L. Hall, and Zhen Xu
- Subjects
Ablation Techniques ,Cancer Research ,Physiology ,medicine.medical_treatment ,Thermal ablation ,Focused ultrasound ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Histotripsy ,0302 clinical medicine ,high intensity ultrasound ,Neoplasms ,Physiology (medical) ,Medical technology ,medicine ,Animals ,Humans ,R855-855.5 ,Ultrasonography ,ultrasound ,business.industry ,Ultrasound ,imaging ,Ablation ,Non-ionizing radiation ,030220 oncology & carcinogenesis ,Models, Animal ,High-Intensity Focused Ultrasound Ablation ,immunotherapy ,business ,physics ,Biomedical engineering - Abstract
Histotripsy is the first noninvasive, non-ionizing, and non-thermal ablation technology guided by real-time imaging. Using focused ultrasound delivered from outside the body, histotripsy mechanically destroys tissue through cavitation, rendering the target into acellular debris. The material in the histotripsy ablation zone is absorbed by the body within 1-2 months, leaving a minimal remnant scar. Histotripsy has also been shown to stimulate an immune response and induce abscopal effects in animal models, which may have positive implications for future cancer treatment. Histotripsy has been investigated for a wide range of applications in preclinical studies, including the treatment of cancer, neurological diseases, and cardiovascular diseases. Three human clinical trials have been undertaken using histotripsy for the treatment of benign prostatic hyperplasia, liver cancer, and calcified valve stenosis. This review provides a comprehensive overview of histotripsy covering the origin, mechanism, bioeffects, parameters, instruments, and the latest results on preclinical and human studies.
- Published
- 2021
- Full Text
- View/download PDF
39. Development and Testing of a Wireline-Deployed Positive-Displacement Pump for Late-Life Wells
- Author
-
François Porel, Michael Peters, Kartikkumar Jaysingbhai Gohil, Laurent Jerzak, Matt Spiecker, Raphaël Dieudonne, Ortiz Santos D, Michael C. Romer, George King, Brandon Alexander Curkan, William Tapie, and Timothy J. Hall
- Subjects
Petroleum engineering ,Artificial lift ,Positive displacement pump ,Wireline ,Energy Engineering and Power Technology ,02 engineering and technology ,General Medicine ,010502 geochemistry & geophysics ,01 natural sciences ,Fuel Technology ,020401 chemical engineering ,0204 chemical engineering ,Geology ,0105 earth and related environmental sciences - Abstract
SummaryWhat do you do after plunger lifting? What if lift gas is not readily available or your liquid level is around a bend? What can you do with a well that has low reservoir pressure, liquid-loading trouble, and fragile economics? Do you give up on the remaining reserves and advance to plugging and abandonment? These questions were considered, and the answers were found to be unsatisfactory. This paper will describe the development and testing of a novel wireline-deployed positive-displacement pump (WLPDP) that was invented to address these challenges.Artificial-lift (AL) pumps have historically been developed with high-producing oil wells in mind. Pumps for late-life wells have mostly been repurposed from these applications and optimized for reduced liquids production. The WLPDP development began with the constraints of late-life wells with the goal of addressing reserves that conventional AL methods would struggle to produce profitably. Internal and industry-wide data were first reviewed to determine what WLPDP specifications would address the majority of late-life wells. The primary target was gas wells, although “stripper” oil wells were also considered. The resulting goal was a pump that could deliver 30 BFPD from 10,000-ft true vertical depth (TVD).The pumping system must be cost-effective to be a viable solution, which led to several design boundaries. Pumps fail and replacement costs can drive economics, so the system must be deployable/retrievable through tubing. The majority of new onshore wells have tortuous geometries, so the system must be able to function at the desired depth despite them—without damaging associated downhole components. The system should use as many off-the-shelf components and known technologies as possible to reduce development costs and encourage integration. Finally, the pump should be able to handle a variety of wellbore liquids, produced gases, and limited solids.The WLPDP was designed to meet the established specifications and boundary conditions. The 2.25-in.-outer-diameter (OD) pump is deployed through tubing. and powered with a standard wireline (WL) logging cable. The cable powers a direct-current (DC) motor that drives an axial piston pump. The piston pump circulates a dielectric oil between two bladders by means of a switching valve. When each bladder expands, it pressurizes inlet-wellbore liquids, pushing them out of the well. Produced gas flows in the annulus between the tubing and production casing. The intake/discharge check valves and bladders are the only internal pump components that contact the wellbore fluids.The WLPDP system was able to meet the design-volume/pressure specifications in all orientations, as confirmed through laboratory and integration testing. Targeted studies were conducted to verify/improve check-valve reliability, gas handling, elastomer suitability, and cable-corrosion resistance. The results of these and related studies will be discussed in the paper.
- Published
- 2020
- Full Text
- View/download PDF
40. Focused ultrasound extraction (FUSE) for the rapid extraction of DNA from tissue matrices
- Author
-
Jason A. Holliday, Qian Zhang, Eli Vlaisavljevich, Hal R. Holmes, David Baisch, Ruby Hutchison, Timothy L. Hall, Morgan Haywood, Connor Edsall, Biomedical Engineering and Mechanics, and Forest Resources and Environmental Conservation
- Subjects
0106 biological sciences ,Virginia tech ,Engineering ,business.industry ,010604 marine biology & hydrobiology ,Ecological Modeling ,Library science ,010603 evolutionary biology ,01 natural sciences ,GeneralLiterature_MISCELLANEOUS ,Focused ultrasound ,ComputingMilieux_GENERAL ,ComputingMethodologies_SYMBOLICANDALGEBRAICMANIPULATION ,focused ultrasound ,DNA barcoding ,business ,DNA extraction ,Ecology, Evolution, Behavior and Systematics - Abstract
Rapid DNA extraction is a critical barrier for routine and fieldable genetics tests for applications in conservation, such as illegal trafficking and fraudulent mislabelling. Here, we develop a non-thermal focused ultrasound extraction (FUSE) technique that creates a dense cloud of high-pressure acoustic cavitation bubbles to disintegrate targeted tissues into an acellular debris, resulting in the rapid release of entrapped DNA. In this work, we demonstrate the proof-of-concept of the FUSE technique by obtaining species identifiable sequences and shotgun sequencing reads from DNA extracted from Atlantic salmon Salmo salar tissues. Having mitigated the key risks for this technique, we hypothesize future developments with this technology can be applied to accelerate and simplify DNA extraction from exceedingly difficult samples with complex tissue matrices (i.e. fibrous tissue and timber samples) in both laboratory and field settings. Gordon and Betty Moore FoundationGordon and Betty Moore Foundation [8518]; Rhodes Trust; Schmidt Futures Foundation; Virginia Tech Department of Biomedical Engineering and Mechanics; Center for Engineering Health; Institute for Critical Technology and Applied Science; National Geographic SocietyNational Geographic Society National Geographic Society; Schmidt Science Fellows; Gordon and Betty Moore Foundation, Grant/Award Number: #8518; Rhodes Trust and Schmidt Futures Foundation; Virginia Tech Department of Biomedical Engineering and Mechanics; Institute for Critical Technology and Applied Science; Center for Engineering Health
- Published
- 2020
- Full Text
- View/download PDF
41. Frequency Threshold for Ablation During Holmium Laser Lithotripsy: How High Can You Go?
- Author
-
Ali H Aldoukhi, Kristian M Black, Khurshid R. Ghani, William W. Roberts, and Timothy L. Hall
- Subjects
business.industry ,Urology ,medicine.medical_treatment ,030232 urology & nephrology ,Holmium laser ,Lasers, Solid-State ,Lithotripsy ,Lithotripsy, Laser ,Ablation ,medicine.disease ,Holmium ,Kidney Calculi ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Pulse frequency ,Humans ,Medicine ,Kidney stones ,business ,Contact laser ,Biomedical engineering - Abstract
Purpose: We performed in vitro studies to assess the relationship of pulse frequency on stone ablation during contact laser lithotripsy and determine if there is a threshold after which its effect ...
- Published
- 2020
- Full Text
- View/download PDF
42. Sustainable Green Processes Enabled by Pulse Electrolytic Principles
- Author
-
Maria Inman, Timothy D Hall, and E. Jennings Taylor
- Subjects
Electrolysis ,business.product_category ,Materials science ,business.industry ,Electrochemical machining ,Environmentally friendly ,Energy storage ,law.invention ,Electropolishing ,law ,Plating ,Electric vehicle ,Electrochemistry ,Electronics ,Process engineering ,business - Abstract
Electrochemical and solid state science, engineering, and technology have an important role to play in society’s sustainable future. Early discussions of the potential environmental contributions by academic, government, and industrial electrochemists were presented in Electrochemistry of Cleaner Environments (1972), Electrochemistry for a Cleaner Environment (1992), and Environmental Aspects of Electrochemical Technology (2000). Some important electrochemical technologies include batteries and fuel cells for mobile (electric vehicle) power and stationary energy storage (wind, solar), conversion and capture of greenhouse (carbon dioxide) gases, contaminate destruction (PFAS), and electrochemical recycling of electronics in support of a circular economy among others. Additionally, many have noted that electrochemical processes are inherently environmentally friendly as “electrons are green.” While we agree with this notion, we also note that many electrochemical processes based on direct current (DC) electrolysis, such as electrodeposition (plating) and surface finishing (electropolishing and electrochemical machining), use environmental and worker “unfriendly” electrolytes. By altering the electrochemical paradigm from one based on DC electrolysis to one based on pulse/pulse reverse current (P/PRC) electrolytic principles, simpler electrolytes with favorable manufacturing/worker and environmental impacts may be accrued. After a brief introduction to the author’s perspective, we present examples of sustainable technologies enabled by P/PRC electrolysis: 1) green electrodeposition of chromium for functional applications, 2) worker friendly electropolishing of niobium for particle accelerator applications, and 3) zero-discharge electrochemical machining of cannon barrels.
- Published
- 2020
- Full Text
- View/download PDF
43. Pulse modulation with Moses technology improves popcorn laser lithotripsy
- Author
-
Joel M.H. Teichman, Ali H Aldoukhi, Sami E Majdalany, William W. Roberts, Timothy L. Hall, Khurshid R. Ghani, and Kristian M Black
- Subjects
business.industry ,Urology ,Bubble ,medicine.medical_treatment ,030232 urology & nephrology ,chemistry.chemical_element ,Lithotripsy ,Laser ,Laser lithotripsy ,Plume ,law.invention ,Fragment size ,03 medical and health sciences ,0302 clinical medicine ,chemistry ,law ,030220 oncology & carcinogenesis ,Medicine ,Atomic physics ,business ,Holmium ,Pulse-width modulation - Abstract
Moses™ technology has been developed to improve holmium laser fragmentation at 1–2 mm distance from the stone. Because popcorn lithotripsy is a non-contact technique, we compared short pulse (SP) and Moses distance (MD) modes in an in vitro model. BegoStones were fragmented using a 120 W Ho:YAG laser (P120 Moses) and a 230 μm core fiber introduced through a ureteroscope. 20 W (1 J × 20 Hz; 0.5 J × 40 Hz) and 40 W (1 J × 40 Hz; 0.5 J × 80 Hz) settings (total energy 4.8 kJ) were tested using SP and MD modes. We assessed fragment size distribution and mass lost in fluid (initial mass–final dry mass of all sievable fragments). High-speed video analysis of fragmentation strike rate and vapor bubble characteristics was conducted for 1 J × 20 Hz and 0.5 J × 80 Hz. Laser strike rate (number of strikes divided by frequency) was categorized as: (1) direct—a visual plume of dust ejected from stone while in contact with fiber tip; (2) indirect—a visual plume of dust ejected with distance between stone and fiber tip. For 1 J × 20 Hz (20 W), MD resulted in more mass lost in fluid and a lower distribution of fragments ≥ 2 mm compared to SP (p
- Published
- 2020
- Full Text
- View/download PDF
44. Electrochemistry for Space Life Support
- Author
-
George J. Nelson, Santosh H. Vijapur, Timothy D. Hall, Brittany R. Brown, Armando Peña-Duarte, and Carlos R. Cabrera
- Subjects
business.industry ,Process (engineering) ,020209 energy ,02 engineering and technology ,Mars Exploration Program ,Space (commercial competition) ,Space exploration ,Life support ,Human space exploration ,0202 electrical engineering, electronic engineering, information engineering ,Electrochemistry ,Environmental science ,Process engineering ,business ,Closed loop ,Resource utilization - Abstract
Electrochemical technology plays a key role in maintaining habitable environments for human space exploration. Historically, oxygen generation through electrolysis has been a key electrochemical technology for space life support. However, emerging electrochemical technologies are changing the way we process carbon dioxide and urine to supply oxygen and fresh water. Similarly, electrochemical production of hydrogen peroxide can support in-situ resource utilization to produce disinfectants for sanitary needs. These technologies will support space exploration that relies upon closed loop living and is increasingly independent of ground support, opening opportunities for human exploration of the Moon and Mars.
- Published
- 2020
- Full Text
- View/download PDF
45. A cost-effective, multi-flash, 'ghost' imaging technique for high temporal and spatial resolution imaging of cavitation using 'still-frame' cameras
- Author
-
Jonathan R. Sukovich, Zhen Xu, Timothy L. Hall, and Scott C. Haskell
- Subjects
Physics ,Brightness ,Acoustics and Ultrasonics ,business.industry ,Bubble ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Still frame ,02 engineering and technology ,Ghost imaging ,021001 nanoscience & nanotechnology ,030218 nuclear medicine & medical imaging ,law.invention ,Pulse (physics) ,03 medical and health sciences ,Flash (photography) ,0302 clinical medicine ,Optics ,Arts and Humanities (miscellaneous) ,law ,0210 nano-technology ,business ,Image resolution ,Light-emitting diode - Abstract
This paper describes a method for acquiring high temporal and spatial resolution images of cavitation events using a multiple-flash-per-camera-exposure imaging technique. A primary challenge associated with imaging cavitation is that the velocity of the bubble wall reaches its maximum ( ∼ 1.5 × 10 3 m / s) as the bubble size approaches its minimum ( ≲ 1 μ m). In order to adequately resolve dynamics on these scales, specialized—often prohibitively expensive—cameras with ultra-high frame-rates and resolutions are generally required. This paper describes low-cost, high-speed light emitting diode (LED) flash sources with minimum pulse widths of 20 ns that can be pulsed at rates of up to 17 MHz. The flashes are used to illuminate images of bubbles captured using high-resolution “still-frame” cameras wherein multiple flashes are issued from the LED(s) at known time intervals within a single camera exposure, resulting in overlapping snapshots of the same bubble at multiple unique time-points in a single image. The overlapping snapshots can be uniquely associated with the known time-points of the flashes based on their relative levels brightness. This paper demonstrate effective frame-rates up to 4 Mfps using this technique and the acquisition of snapshots at up to 13 unique time-points per exposure. Hardware descriptions of the flash sources and the programmable device used to control them are provided.
- Published
- 2020
- Full Text
- View/download PDF
46. Development of an automated laser drilling algorithm to compare stone ablation patterns from different laser pulse modes
- Author
-
Nikta, Rezakahn Khajeh, Timothy L, Hall, Khurshid R, Ghani, and William W, Roberts
- Subjects
Humans ,Lasers, Solid-State ,Laser Therapy ,Lithotripsy, Laser ,Algorithms - Abstract
To develop a novel automated three-dimensional (3D) laser drilling algorithm to further investigate laser-stone interaction with different laser pulse modes. Comparison of post-ablative lattice architecture combined with mass of stone ablated can provide a more complete understanding of differences between pulse mode.A 3D positioner (securing laser fiber) was programmed to create a 5 × 5 grid of drill holes spaced 1 mm apart on 15:5 cylindrical BegoStones. Beginning 0.5 mm above the stone surface, the laser fiber was activated and advanced 2 mm toward and into the stone for all 25 points. Four trials for each pulse mode [short pulse (SP), long pulse (LP), Moses Contact (MC), Moses Distance (MD)] were completed. Outcome measures were assessment of lattice preservation and mass of ablated stone.MC exhibited the greatest lattice preservation and least stone mass ablated (50.5 ± 2.2 mg). SP (69.4 ± 4.3 mg) and MD (70.0 ± 2.6 mg) had the greatest lattice destruction and stone mass ablated. The differences in stone ablated between MC and MD (p = 0.00003), MC and SP (p = 0.0002), and LP and MD (p = 0.004) were statistically significant.Consistent quantitative and qualitative differences between pulse modes were observed with a novel automated 3D laser drilling algorithm applied to BegoStone. The laser drilling algorithm developed here can be used to further enhance mechanistic understanding of laser-stone interactions and facilitate selection of appropriate laser pulse modes to balance precision and efficiency across the range of laser lithotripsy techniques.
- Published
- 2022
47. Incorporating Gradient Similarity for Robust Time Delay Estimation in Ultrasound Elastography
- Author
-
Md Ashikuzzaman, Timothy J. Hall, and Hassan Rivaz
- Subjects
Acoustics and Ultrasonics ,Phantoms, Imaging ,Image and Video Processing (eess.IV) ,Physics::Medical Physics ,FOS: Physical sciences ,Electrical Engineering and Systems Science - Image and Video Processing ,Signal-To-Noise Ratio ,Physics - Medical Physics ,FOS: Electrical engineering, electronic engineering, information engineering ,Elasticity Imaging Techniques ,Medical Physics (physics.med-ph) ,Electrical and Electronic Engineering ,Instrumentation ,Algorithms ,Ultrasonography - Abstract
Energy-based ultrasound elastography techniques minimize a regularized cost function consisting of data and continuity terms to obtain local displacement estimates based on the local time-delay estimation (TDE) between radio frequency (RF) frames. The data term associated with the existing techniques takes only the amplitude similarity into account and hence is not sufficiently robust to the outlier samples present in the RF frames under consideration. This drawback creates noticeable artifacts in the strain image. To resolve this issue, we propose to formulate the data function as a linear combination of the amplitude and gradient similarity constraints. We estimate the adaptive weight concerning each similarity term following an iterative scheme. Finally, we optimize the nonlinear cost function in an efficient manner to convert the problem to a sparse system of linear equations which are solved for millions of variables. We call our technique rGLUE: robust data term in GLobal Ultrasound Elastography. rGLUE has been validated using simulation, phantom, in vivo liver, and breast datasets. In all our experiments, rGLUE substantially outperforms the recent elastography methods both visually and quantitatively. For simulated, phantom, and in vivo datasets, respectively, rGLUE achieves 107%, 18%, and 23% improvements of signal-to-noise ratio (SNR) and 61%, 19%, and 25% improvements of contrast-to-noise ratio (CNR) over global ultrasound elastography (GLUE), a recently published elastography algorithm.
- Published
- 2022
48. Effects of phase aberration on transabdominal focusing for a large aperture, low
- Author
-
Ellen, Yeats, Dinank, Gupta, Zhen, Xu, and Timothy L, Hall
- Subjects
Liver ,Phantoms, Imaging ,Swine ,Abdomen ,Transducers ,Animals ,High-Intensity Focused Ultrasound Ablation ,Humans ,Water - Published
- 2022
49. Preliminary Proof-of-Concept Testing of Novel Antimicrobial Heat-Conducting 'Metallic' Coatings Against Biofouling and Biocorrosion
- Author
-
Di Wang, Timothy D. Hall, and Tingyue Gu
- Subjects
Microbiology (medical) ,Microbiology - Abstract
NiMo (nickel-molybdenum) and NiMo with embedded CeO2 nanoparticles (NPs; 100 nm) were tested as antimicrobial coatings (~15 μm thickness) on titanium (Ti) surfaces using an electrochemical process for heat exchanger applications onboard marine vessels. Preliminary static biofouling and biocorrosion (also known as microbiologically influenced corrosion) assessments were carried out in glass bottles using pure-culture Desulfovibrio vulgaris, a sulfate-reducing bacterium (SRB), in deoxygenated ATCC 1249 medium at 37°C, and using an alga (Chlorella vulgaris) mixed with general heterotrophic bacteria (GHB) in enriched artificial seawater at 28°C. It was found that the coating containing NiMo/CeO2 NPs were much more effective than NiMo in preventing SRB biofilm formation with an efficacy of 99% reduction in D. vulgaris sessile cells after 21 day incubation. The coating also exhibited a 50% lower corrosion current density compared to the uncoated Ti against SRB corrosion. Both NiMo and NiMo/CeO2 NP coatings achieved 99% reduction in sessile algal cells. Confocal laser scanning microscopy (CLSM) biofilm images indicated a large reduction of sessile GHB cells. The CLSM images also confirmed the biocidal kill effects of the two coatings. Unlike polymer coatings, the “metallic” coatings are heat conductive. Thus, the corrosion resistant antifouling coatings are suitable for heat exchanger applications.
- Published
- 2022
50. OCT measurement of mechanical properties in human fetal membranes
- Author
-
Kayvan Samimi, Emmanuel Contreras Guzman, May Wu, Lindsey C. Carlson, Helen Feltovich, Timothy J. Hall, Kristin M. Myers, and Melissa C. Skala
- Published
- 2022
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.