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152 results on '"Yi Qin Gao"'

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3. Characterization of network hierarchy reflects cell state specificity in genome organization

4. Reaction coordinates by nonlinear dimensionality reduction

5. Sequence-Specific Structural Features and Solvation Properties of Transcription Factor Binding DNA Motifs: Insights from Molecular Dynamics Simulation

6. DNA Sequence-Dependent Binding of Linker Histone gH1 Regulates Nucleosome Conformations

7. Assisting and Accelerating NMR Assignment with Restrained Structure Prediction

11. Topological Constraints with Optimal Length Promote the Formation of Chromosomal Territories at Weakened Degree of Phase Separation

12. Locating Transition Zone in Phase Space

13. Phase Transition between Crystalline Variants of Ordinary Ice

14. Microscopic model on indoor propagation of respiratory droplets

15. Characterization of network hierarchy reflects cell-state specificity in genome organization

16. Multi-scale gene regulation mechanism: Spatiotemporal transmission of genetic information

17. Computational Enhanced Hi-C data reveals the function of structural geometry in genomic regulation

18. Deep reinforcement learning of transition states

19. Enhanced Sampling Simulation Reveals How Solvent Influences Chirogenesis of the Intra-Molecular Diels-Alder Reaction

20. Microscopic Insight into pH-Dependent Conformational Dynamics and Noncanonical Base Pairing in Telomeric i-Motif DNA

21. Toward an understanding of the relation between gene regulation and 3D genome organization

22. The importance of dynamic effects in chemical reactions in condensed phase

23. Role of Engineered Iron-haem Enzyme in Reactivity and Stereoselectivity of Intermolecular Benzylic C–H Bond Amination

24. Expression regulation of genes is linked to their CpG density distributions around transcription start sites

25. Understanding gene regulatory mechanisms based on gene classification

27. DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes

28. Deep Representation Learning for Complex Free-Energy Landscapes

29. Ice Nucleation of Confined Monolayer Water Conforms to Classical Nucleation Theory

30. Interlayer hopping dynamics of bilayer water confined between graphene sheets

32. A perspective on the molecular simulation of DNA from structural and functional aspects

33. Two-step fitness selection for intra-host variations in SARS-CoV-2

34. Comparison of the Microsolvation of CaX

35. Progressive domain segregation in early embryonic development and underlying correlation to genetic and epigenetic changes

37. Deep Learning for Variational Multi-Scale Molecular Modeling

38. Super-resolution Imaging Reveals Spatiotemporal Propagation of Human Replication Foci Mediated by CTCF-organized Chromatin Structures

39. Deep Learning for Multi-Scale Molecular Modeling

40. Reinforcement Learning for Multi-Scale Molecular Modeling

41. Hierarchical dinucleotide distribution in genome along evolution and its effect on chromatin packing

42. Domain segregated 3D chromatin structure and segmented DNA methylation in carcinogenesis

43. Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry

44. Microscopic Insight into the Protein Denaturation Action of Urea and Its Methyl Derivatives

45. The effect of hydration number on the interfacial transport of sodium ions

46. CDNs–STING Interaction Mechanism Investigations and Instructions on Design of CDN-Derivatives

47. Single Mutations Reshape the Structural Correlation Network of the DMXAA–Human STING Complex

48. Simulation Studies of the Self-Assembly of Halogen-Bonded Sierpiński Triangle Fractals

49. Structural properties and influence of solvent on the stability of telomeric four-stranded i-motif DNA

50. Chromatin structure changes during various processes from a DNA sequence view

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