404 results on '"Zhengguo Li"'
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2. Cost-effective distributed FTFC for uncertain nonholonomic mobile robot fleet with collision avoidance and connectivity preservation
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Xiucai Huang, Zhengguo Li, and Frank L. Lewis
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- 2023
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3. Neural Augmented Exposure Interpolation for Two Large-Exposure-Ratio Images
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Chaobing Zheng, Weibin Jia, Shiqian Wu, and Zhengguo Li
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Media Technology ,Electrical and Electronic Engineering - Published
- 2023
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4. Pathogenesis-related protein 1 suppresses oomycete pathogen by targeting against AMPK kinase complex
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Xiumei Luo, Tingting Tian, Li Feng, Xingyong Yang, Linxuan Li, Xue Tan, Wenxian Wu, Zhengguo Li, Haim Treves, Francois Serneels, I-Son Ng, Kan Tanaka, and Maozhi Ren
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Multidisciplinary - Abstract
During the arms race between plants and pathogens, pathogenesis-related proteins (PR) in host plants play a crucial role in disease resistance, especially PR1. PR1 constitute a secretory peptide family, and their role in plant defense has been widely demonstrated in both hosts and in vitro. However, the mechanisms by which they control host-pathogen interactions and the nature of their targets within the pathogen remain poorly understood.The present study was aimed to investigate the anti-oomycete activity of secretory PR1 proteins and elaborate their underlying mechanisms.This study was conducted in the potato-Phytophthora infestans pathosystem. After being induced by the pathogen infection, the cross-kingdom translocation of secretory PR1 was demonstrated by histochemical assays and western blot, and their targets in P. infestans were identified by yeast-two-hybrid assays, bimolecular fluorescence complementation assays, and co-immunoprecipitation assay.The results showed that the expression of secretory PR1-encoding genes was induced during pathogen infection, and the host could deliver PR1 into P. infestans to inhibit its vegetative growth and pathogenicity. The translocated secretory PR1 targeted the subunits of the AMPK kinase complex in P. infestans, thus affecting the AMPK-driven phosphorylation of downstream target proteins, preventing ROS homeostasis, and down-regulating the expression of RxLR effectors.The results provide novel insights into the molecular function of PR1 in protecting plants against pathogen infection, and uncover a potential target for preventing pre- and post-harvest late blight.
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- 2023
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5. The secreted immune response peptide 1 functions as a phytocytokine in rice immunity
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Pingyu Wang, Huimin Jia, Ting Guo, Yuanyuan Zhang, Wanqing Wang, Hideki Nishimura, Zhengguo Li, and Yoji Kawano
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Physiology ,Plant Science - Abstract
Small signalling peptides play important roles in various plant processes, but information regarding their involvement in plant immunity is limited. We previously identified a novel small secreted protein in rice, called immune response peptide 1 (IRP1). Here, we studied the function of IRP1 in rice immunity. Rice plants overexpressing IRP1 enhanced resistance to the virulent rice blast fungus. Application of synthetic IRP1 to rice suspension cells triggered the expression of IRP1 itself and the defence gene phenylalanine ammonia-lyase 1 (PAL1). RNA-seq results revealed that 84% of genes up-regulated by IRP1, including 13 OsWRKY transcription factors, were also induced by a microbe-associated molecular pattern (MAMP), chitin, indicating that IRP1 and chitin share a similar signalling pathway. Co-treatment with chitin and IRP1 elevated the expression level of PAL1 and OsWRKYs in an additive manner. The increased chitin concentration arrested the induction of IRP1 and PAL1 expression by IRP1, but did not affect IRP1-triggered mitogen-activated protein kinases (MAPKs) activation. Collectively, our findings indicate that IRP1 functions as a phytocytokine in rice immunity regulating MAPKs and OsWRKYs that can amplify chitin and other signalling pathways, and provide new insights into how MAMPs and phytocytokines cooperatively regulate rice immunity.
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- 2022
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6. Multi-Scale Exposure Fusion via Content Adaptive Edge-Preserving Smoothing Pyramids
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Weibin Jia, Zhihuan Song, and Zhengguo Li
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Media Technology ,Electrical and Electronic Engineering - Published
- 2022
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7. Auxin and abscisic acid antagonistically regulate ascorbic acid production via the SlMAPK8–SlARF4–SlMYB11 module in tomato
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Xin Xu, Qiongdan Zhang, Xueli Gao, Guanle Wu, Mengbo Wu, Yujin Yuan, Xianzhe Zheng, Zehao Gong, Xiaowei Hu, Min Gong, Tiancheng Qi, Honghai Li, Zisheng Luo, Zhengguo Li, and Wei Deng
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Indoleacetic Acids ,Solanum lycopersicum ,Gene Expression Regulation, Plant ,Stress, Physiological ,Ascorbic Acid ,Cell Biology ,Plant Science ,Abscisic Acid ,Plant Proteins ,Droughts - Abstract
Ascorbic acid (AsA) is a multifunctional phytonutrient that is essential for the human diet as well as plant development. While much is known about AsA biosynthesis in plants, how this process is regulated in tomato (Solanum lycopersicum) fruits remains unclear. Here, we found that auxin treatment inhibited AsA accumulation in the leaves and pericarps of tomato. The auxin response factor gene SlARF4 is induced by auxin to mediate auxin-induced inhibition of AsA accumulation. Specifically, SlARF4 transcriptionally inhibits the transcription factor gene SlMYB11, thereby modulating AsA accumulation by regulating the transcription of the AsA biosynthesis genes l-galactose-1-phosphate phosphatase, l-galactono-1,4-lactone dehydrogenase, and dehydroascorbate. By contrast, abscisic acid (ABA) treatment increased AsA accumulation in tomato under drought stress. ABA induced the expression of the mitogen-activated protein kinase gene SlMAPK8. We demonstrate that SlMAPK8 phosphorylates SlARF4 and inhibits its transcriptional activity, whereas SlMAPK8 phosphorylates SlMYB11 and activates its transcriptional activity. SlMAPK8 functions in ABA-induced AsA accumulation and drought stress tolerance. Moreover, ABA antagonizes the effects of auxin on AsA biosynthesis. Therefore, auxin- and ABA-induced regulation of AsA accumulation is mediated by the SlMAPK8–SlARF4–SlMYB11 module in tomato during fruit development and drought stress responses, shedding light on the roles of phytohormones in regulating AsA accumulation to mediate stress tolerance.
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- 2022
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8. Deep Joint Demosaicing and High Dynamic Range Imaging Within a Single Shot
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Changyun Wen, Zhengguo Li, Xingming Wu, Yilun Xu, Weihai Chen, Ziyang Liu, and School of Electrical and Electronic Engineering
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FOS: Computer and information sciences ,Bayer filter ,Demosaicing ,Pixel ,business.industry ,Computer science ,Computer Vision and Pattern Recognition (cs.CV) ,Image and Video Processing (eess.IV) ,Computer Science - Computer Vision and Pattern Recognition ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Electrical Engineering and Systems Science - Image and Video Processing ,Convolution ,HDRi ,Interference (communication) ,High-dynamic-range imaging ,FOS: Electrical engineering, electronic engineering, information engineering ,Electrical and electronic engineering [Engineering] ,Media Technology ,Computer vision ,Artificial intelligence ,Electrical and Electronic Engineering ,Ghosting ,business ,Spatially Varying Exposure - Abstract
Spatially varying exposure (SVE) is a promising choice for high-dynamic-range (HDR) imaging (HDRI). The SVE-based HDRI, which is called single-shot HDRI, is an efficient solution to avoid ghosting artifacts. However, it is very challenging to restore a full-resolution HDR image from a real-world image with SVE because: a) only one-third of pixels with varying exposures are captured by camera in a Bayer pattern, b) some of the captured pixels are over- and under-exposed. For the former challenge, a spatially varying convolution (SVC) is designed to process the Bayer images carried with varying exposures. For the latter one, an exposure-guidance method is proposed against the interference from over- and under-exposed pixels. Finally, a joint demosaicing and HDRI deep learning framework is formalized to include the two novel components and to realize an end-to-end single-shot HDRI. Experiments indicate that the proposed end-to-end framework avoids the problem of cumulative errors and surpasses the related state-of-the-art methods., 15 pages, 17 figures
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- 2022
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9. Engineering of tomato type VI glandular trichomes for trans-chrysanthemic acid biosynthesis, the acid moiety of natural pyrethrin insecticides
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Ying Wang, Jing Wen, Lang Liu, Jing Chen, Chu Wang, Zhengguo Li, Guodong Wang, Eran Pichersky, and Haiyang Xu
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Mammals ,Plant Leaves ,Insecticides ,Chrysanthemum cinerariifolium ,Solanum lycopersicum ,Pyrethrins ,Monoterpenes ,Animals ,Bioengineering ,Trichomes ,Applied Microbiology and Biotechnology ,Biotechnology - Abstract
Glandular trichomes, known as metabolic cell factories, have been proposed as highly suitable for metabolically engineering the production of plant high-value specialized metabolites. Natural pyrethrins, found only in Dalmatian pyrethrum (Tanacetum cinerariifolium), are insecticides with low mammalian toxicity and short environmental persistence. Type I pyrethrins are esters of the monoterpenoid trans-chrysanthemic acid with one of the three rethrolone-type alcohols. To test if glandular trichomes can be made to synthesize trans-chrysanthemic acid, we reconstructed its biosynthetic pathway in tomato type VI glandular trichomes, which produce large amounts of terpenoids that share the precursor dimethylallyl diphosphate (DMAPP) with this acid. This was achieved by coexpressing the trans-chrysanthemic acid pathway related genes including TcCDS encoding chrysanthemyl diphosphate synthase and the fusion gene of TcADH2 encoding the alcohol dehydrogenase 2 linked with TcALDH1 encoding the aldehyde dehydrogenase 1 under the control of a newly identified type VI glandular trichome-specific metallocarboxypeptidase inhibitor promoter. Whole tomato leaves harboring type VI glandular trichomes expressing all three aformentioned genes had a concentration of total trans-chrysanthemic acid that was about 1.5-fold higher (by mole number) than the levels of β-phellandrene, the dominant monoterpene present in non-transgenic leaves, while the levels of β-phellandrene and the representative sesquiterpene β-caryophyllene in transgenic leaves were reduced by 96% and 81%, respectively. These results suggest that the tomato type VI glandular trichome is an alternative platform for the biosynthesis of trans-chrysanthemic acid by metabolic engineering.
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- 2022
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10. Automatic vocabulary and graph verification for accurate loop closure detection
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Haosong Yue, Jinyu Miao, Weihai Chen, Wei Wang, Fanghong Guo, and Zhengguo Li
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FOS: Computer and information sciences ,Computer Science - Robotics ,Control and Systems Engineering ,Computer Vision and Pattern Recognition (cs.CV) ,Computer Science - Computer Vision and Pattern Recognition ,Robotics (cs.RO) ,Computer Science Applications - Abstract
Localizing pre-visited places during long-term simultaneous localization and mapping, i.e. loop closure detection (LCD), is a crucial technique to correct accumulated inconsistencies. As one of the most effective and efficient solutions, Bag-of-Words (BoW) builds a visual vocabulary to associate features and then detect loops. Most existing approaches that build vocabularies off-line determine scales of the vocabulary by trial-and-error, which often results in unreasonable feature association. Moreover, the accuracy of the algorithm usually declines due to perceptual aliasing, as the BoW-based method ignores the positions of visual features. To overcome these disadvantages, we propose a natural convergence criterion based on the comparison between the radii of nodes and the drifts of feature descriptors, which is then utilized to build the optimal vocabulary automatically. Furthermore, we present a novel topological graph verification method for validating candidate loops so that geometrical positions of the words can be involved with a negligible increase in complexity, which can significantly improve the accuracy of LCD. Experiments on various public datasets and comparisons against several state-of-the-art algorithms verify the performance of our proposed approach., Comment: 11 pages, 9 figures
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- 2022
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11. Object servoing of differential-drive service robots using switched control
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Weibin Jia, Wenjie Zhao, Zhihuan Song, and Zhengguo Li
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Human-Computer Interaction ,Control and Optimization ,Artificial Intelligence ,Computer Networks and Communications ,Control and Systems Engineering ,Signal Processing ,Information Systems - Published
- 2022
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12. A molecular framework of ethylene-mediated fruit growth and ripening processes in tomato
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Wei Huang, Nan Hu, Zhina Xiao, Yuping Qiu, Yan Yang, Jie Yang, Xin Mao, Yichuan Wang, Zhengguo Li, and Hongwei Guo
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Cell Biology ,Plant Science - Abstract
Although the role of ethylene in tomato (Solanum lycopersicum) fruit ripening has been intensively studied, its role in tomato fruit growth remains poorly understood. In addition, the relationship between ethylene and the developmental factors NON-RIPENING (NOR) and RIPENING INHIBITOR (RIN) during ripening is under debate. Here, we carried out comprehensive genetic analyses of genome-edited mutants of tomato ETHYLENE INSENSITIVE 2 (SlEIN2), four EIN3-like genes (SlEIL1–4), and three EIN3 BINDING F-box protein genes (SlEBF1–3). Both slein2-1 and the high-order sleil mutant (sleil1 sleil2 sleil3/SlEIL3 sleil4) showed reduced fruit size, mainly due to decreased auxin biosynthesis. During fruit maturation, slein2 mutants displayed the complete cessation of ripening, which was partially rescued by slebf1 but not slebf2 or slebf3. We also discovered that ethylene directly activates the expression of the developmental genes NOR, RIN, and FRUITFULL1 (FUL1) via SlEIL proteins. Indeed, overexpressing these genes partially rescued the ripening defects of slein2-1. Finally, the signal intensity of the ethylene burst during fruit maturation was intimately connected with the progression of full ripeness. Collectively, our work uncovers a critical role of ethylene in fruit growth and supports a molecular framework of ripening control in which the developmental factors NOR, RIN, and FUL1 act downstream of ethylene signaling.
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- 2022
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13. Control of fruit softening and Ascorbic acid accumulation by manipulation of SlIMP3 in tomato
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Xianzhe Zheng, Yujin Yuan, Baowen Huang, Xiaowei Hu, Yuwei Tang, Xin Xu, Mengbo Wu, Zehao Gong, Yingqing Luo, Min Gong, Xueli Gao, Guanle Wu, Qiongdan Zhang, Lu Zhang, Helen Chan, Benzhong Zhu, Zhengguo Li, Louise Ferguson, and Wei Deng
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Technology ,softening ,Plant ,fruit ,Ascorbic Acid ,Plant Science ,tomato ,Biological Sciences ,Medical and Health Sciences ,Gene Expression Regulation ,Solanum lycopersicum ,Cell Wall ,Gene Expression Regulation, Plant ,Fruit ,myoinositol ,Agronomy and Crop Science ,Inositol ,Plant Proteins ,Biotechnology - Abstract
Postharvest deterioration is among the major challenges for the fruit industry. Regulation of the fruit softening rate is an effective strategy for extending shelf-life and reducing the economic losses due postharvest deterioration. The tomato myoinositol monophosphatase 3 gene SlIMP3, which showed highest expression level in fruit, was expressed and purified. SlIMP3 demonstrated high affinity with the L-Gal 1-P and D-Ins 3-P, and acted as a bifunctional enzyme in the biosynthesis of AsA and myoinositol. Overexpression of SlIMP3 not only improved AsA and myoinositol content, but also increased cell wall thickness, improved fruit firmness, delayed fruit softening, decreased water loss, and extended shelf-life. Overexpression of SlIMP3 also increased uronic acid, rhamnose, xylose, mannose, and galactose content in cell wall of fruit. Treating fruit with myoinositol obtained similar fruit phenotypes of SlIMP3-overexpressed fruit, with increased cell wall thickness and delayed fruit softening. Meanwhile, overexpression of SlIMP3 conferred tomato fruit tolerance to Botrytis cinerea. The function of SlIMP3 in cell wall biogenesis and fruit softening were also verified using another tomato species, Ailsa Craig (AC). Overexpression of SlDHAR in fruit increased AsA content, but did not affect the cell wall thickness or fruit firmness and softening. The results support a critical role for SlIMP3 in AsA biosynthesis and cell wall biogenesis, and provide a new method of delaying tomato fruit softening, and insight into the link between AsA and cell wall metabolism.
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- 2022
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14. Tomato transcriptional repressor <scp>SlBES1</scp> .8 influences shoot apical meristem development by inhibiting the <scp>DNA</scp> binding ability of <scp>SlWUS</scp>
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Deding Su, Ling Wen, Wei Xiang, Yuan Shi, Wang Lu, Yudong Liu, Zhiqiang Xian, and Zhengguo Li
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Homeodomain Proteins ,Solanum lycopersicum ,Arabidopsis Proteins ,Gene Expression Regulation, Plant ,Meristem ,Genetics ,DNA ,Cell Biology ,Plant Science ,Plant Shoots ,Transcription Factors - Abstract
As the reservoir of pluripotent stem cells, the shoot apical meristem (SAM) is responsible for the production of aboveground plant organs including flower and fruit. The stem cell pool is dramatically influenced by a conserved negative feedback circuit between WUSCHEL (WUS) and CLAVATA (CLV). Numerous studies have focused on the functional mechanism of WUS in maintaining SAM development over the past few years, while the co-regulators of WUS remain to be discovered. Here, we identified a tomato (Solanum lycopersicum) BES1 transcription factor, SlBES1.8, that is specifically expressed in the SAM and flower and functions as a transcriptional repressor. Overexpression of SlBES1.8 resulted in enlarged SAM and extra floral organs in tomato, which eventually led to the formation of pepper-like fruit with increased soluble sugar and organic acid contents. Direct regulatory effects of SlBES1.8 on the CLV-WUS signaling cascade were not observed; instead, protein-protein interaction between SlBES1.8 and SlWUS was confirmed and the crucial interaction domains were identified. As a result, this heterodimerization significantly repressed the transcriptional regulation ability of SlWUS by inhibiting SlWUS binding to the promoter fragments of CLV3 and downstream genes. Taken together, our findings suggest that SlBES1.8 serves as a novel co-regulator of SlWUS to influence the development of the SAM.
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- 2022
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15. <scp>SlMYB99</scp>‐mediated auxin and abscisic acid antagonistically regulate ascorbic acids biosynthesis in tomato
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Xin Xu, Baowen Huang, Xu Fang, Qiongdan Zhang, Tiancheng Qi, Min Gong, Xianzhe Zheng, Mengbo Wu, Yongfei Jian, Jie Deng, Yulin Cheng, Zhengguo Li, and Wei Deng
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Physiology ,Plant Science - Published
- 2023
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16. Tomato SlBES1.8 Influences Leaf Morphogenesis by Mediating Gibberellin Metabolism and Signaling
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Deding Su, Wei Xiang, Qin Liang, Ling Wen, Yuan Shi, Bangqian Song, Yudong Liu, Zhiqiang Xian, and Zhengguo Li
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Plant Leaves ,Organogenesis, Plant ,Solanum lycopersicum ,Gene Expression Regulation, Plant ,Physiology ,fungi ,food and beverages ,Cell Biology ,Plant Science ,General Medicine ,Gibberellins ,Plant Proteins - Abstract
Leaf morphogenetic activity determines its shape diversity. However, our knowledge of the regulatory mechanism in maintaining leaf morphogenetic capacity is still limited. In tomato, gibberellin (GA) negatively regulates leaf complexity by shortening the morphogenetic window. We here report a tomato BRI1-EMS-suppressor 1 transcription factor, SlBES1.8, that promoted the simplification of leaf pattern in a similar manner as GA functions. OE-SlBES1.8 plants exhibited reduced sensibility to exogenous GA3 treatment whereas showed increased sensibility to the application of GA biosynthesis inhibitor, paclobutrazol. In line with the phenotypic observation, the endogenous bioactive GA contents were increased in OE-SlBES1.8 lines, which certainly promoted the degradation of the GA signaling negative regulator, SlDELLA. Moreover, transcriptomic analysis uncovered a set of overlapping genomic targets of SlBES1.8 and GA, and most of them were regulated in the same way. Expression studies showed the repression of SlBES1.8 to the transcriptions of two GA-deactivated genes, SlGA2ox2 and SlGA2ox6, and one GA receptor, SlGID1b-1. Further experiments confirmed the direct regulation of SlBES1.8 to their promoters. On the other hand, SlDELLA physically interacted with SlBES1.8 and further inhibited its transcriptional regulation activity by abolishing SlBES1.8–DNA binding. Conclusively, by mediating GA deactivation and signaling, SlBES1.8 greatly influenced tomato leaf morphogenesis.
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- 2022
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17. Complete Genome Sequence Data of a Novel Streptomyces sp. Strain A2-16, a Potential Biological Control Agent for Potato Late Blight
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Zhengguo Li, Yongfei Jian, Zhenglin Zhu, Liang Jin, Xiaoqing Huang, Shicai Tang, Dong Pan, and Feng Shun
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0301 basic medicine ,Hyphal growth ,Whole genome sequencing ,biology ,Strain (chemistry) ,030106 microbiology ,Chromosome ,Plant Science ,biology.organism_classification ,Streptomyces ,Genome ,Microbiology ,03 medical and health sciences ,030104 developmental biology ,Phytophthora infestans ,Blight ,Agronomy and Crop Science - Abstract
Streptomyces sp. strain A2-16 was recently isolated from potato root zone soil, and it could inhibit the hyphal growth of Phytophthora infestans. The A2-16 genome consisted of one chromosome of 9,765,518 bp and one plasmid of 30,948 bp with GC contents of 70.88% and 68.39%, respectively. A total of 8,518 predicted coding genes, 3 ncRNA,73 tRNA,18 rRNA genes, and 28 secondary metabolite biosynthesis gene clusters were identified. The products of the gene clusters included bioactive polyketides, terpenes, and siderophores, which might contribute to host plants against disease. The average nucleotide identity (ANI) value (82.88–91.41%) among the genome of A2-16 and other Streptomyces species suggested it might not belong to any previously sequenced species in the Streptomyces genus.
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- 2022
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18. Distributed Successive Convex Approximation for Nonconvex Economic Dispatch in Smart Grid
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Wei Wang, Changyun Wen, Bowen Xu, Zhengguo Li, Fanghong Guo, and Wen-An Zhang
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Mathematical optimization ,Optimization problem ,Computer science ,Economic dispatch ,Approximation algorithm ,Computer Science Applications ,Constraint (information theory) ,Smart grid ,Consensus ,Control and Systems Engineering ,Convex optimization ,Electrical and Electronic Engineering ,Dispatchable generation ,Information Systems - Abstract
This article presents a distributed consensus-based successive convex approximation (DSCA) algorithm to solve nonconvex nondifferentiable economic dispatch (ED) problems. The ED model formulated incorporates generation constraints, valve-point effects, and multiple fuel types. A perturbation technique enables the proposed DSCA to tackle such a nondifferentiable and nonconvex optimization, which paves the way to solving more complicated optimization problems that occur in practical applications. The local generation constraint is taken care by a local surrogate convex optimization directly. The global equality constraint is handled based on a consensus protocol, where the local generation–demand mismatch among all dispatchable generators (DGs) is shared in a distributed manner. As a result, the power distribution of DGs is updated, and the generation cost is minimized. Several case studies show that the proposed DSCA algorithm can achieve superior ED solutions and computational efficiency over existing nonconvex optimization algorithms.
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- 2021
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19. Study on mechanism of action of total flavonoids from Cortex Juglandis Mandshuricae against alcoholic liver disease based on 'gut-liver axis'
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Huiru Liu, Wenwen Meng, Dongsheng Zhao, Zhihui Ma, Wenguang Zhang, Zhi Chen, Zhengguo Li, and Pan Zhao
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Pharmacology ,Pharmacology (medical) - Abstract
The objective of this study was to investigate the effects and molecular mechanisms of total flavonoids from Cortex Juglandis Mandshuricae (TFC) on preventing alcohol-induced chronic liver injury and regulating gut microbiota in mice. The results showed that oral administration of TFC significantly attenuated alcoholic liver injury in mice. TFC improved lipid accumulation in mice with chronic alcoholic liver injury through activation of the AMPK/PPARα pathway. In addition, TFC maintained the integrity of the intestinal barrier in alcoholic mice, reducing endotoxin leakage from the intestine and further inhibiting the TLR4/NF-κB inflammatory pathway. More importantly, TFC regulated the intestinal microbiota composition and certain bacteria, including Akkermansia muciniphila, Lactobacillus and others. At the same time, reduced levels of short-chain fatty acids due to alcohol consumption were restored. In summary, TFC upregulated AMPK/PPARα signaling pathway to improve hepatic fat accumulation and oxidative stress; TFC positively regulated intestinal flora composition to reduce intestinal disorders caused by alcohol consumption, and further inhibited alcohol-induced inflammatory responses through the intestinal-liver axis. The above findings may be the mechanism of TFC’s pharmacological effects against alcoholic liver injury.
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- 2023
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20. ALIKED: A Lighter Keypoint and Descriptor Extraction Network via Deformable Transformation
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Xiaoming Zhao, Xingming Wu, Weihai Chen, Peter C. Y. Chen, Qingsong Xu, and Zhengguo Li
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FOS: Computer and information sciences ,Computer Vision and Pattern Recognition (cs.CV) ,Computer Science - Computer Vision and Pattern Recognition ,Electrical and Electronic Engineering ,Instrumentation - Abstract
Image keypoints and descriptors play a crucial role in many visual measurement tasks. In recent years, deep neural networks have been widely used to improve the performance of keypoint and descriptor extraction. However, the conventional convolution operations do not provide the geometric invariance required for the descriptor. To address this issue, we propose the Sparse Deformable Descriptor Head (SDDH), which learns the deformable positions of supporting features for each keypoint and constructs deformable descriptors. Furthermore, SDDH extracts descriptors at sparse keypoints instead of a dense descriptor map, which enables efficient extraction of descriptors with strong expressiveness. In addition, we relax the neural reprojection error (NRE) loss from dense to sparse to train the extracted sparse descriptors. Experimental results show that the proposed network is both efficient and powerful in various visual measurement tasks, including image matching, 3D reconstruction, and visual relocalization., Comment: Accepted by IEEE Transactions on Instrumentation & Measurement
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- 2023
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21. SlMYB72 affects pollen development by regulating autophagy in tomato
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Mengbo Wu, Qiongdan Zhang, Guanle Wu, Lu Zhang, Xin Xu, Xiaowei Hu, Zehao Gong, Yulin Chen, Zhengguo Li, Honghai Li, and Wei Deng
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Genetics ,Plant Science ,Horticulture ,Biochemistry ,Biotechnology - Abstract
The formation and development of pollen are among the most critical processes for reproduction and genetic diversity in the life cycle of flowering plants. The present study found that SlMYB72 was highly expressed in the pollen and tapetum of tomato flowers. Downregulation of SlMYB72 led to a decrease in the amounts of seeds due to abnormal pollen development compared with wild-type plants. Downregulation of SlMYB72 delayed tapetum degradation and inhibited autophagy in tomato anther. Overexpression of SlMYB72 led to abnormal pollen development and delayed tapetum degradation. Expression levels of some autophagy-related genes (ATGs) were decreased in SlMYB72 downregulated plants and increased in overexpression plants. SlMYB72 was directly bound to ACCAAC/ACCAAA motif of the SlATG7 promoter and activated its expression. Downregulation of SlATG7 inhibited the autophagy process and tapetum degradation, resulting in abnormal pollen development in tomatoes. These results indicated SlMYB72 affects the tapetum degradation and pollen development by transcriptional activation of SlATG7 and autophagy in tomato anther. The study expands the understanding of the regulation of autophagy by SlMYB72, uncovers the critical role that autophagy plays in pollen development, and provides potential candidate genes for the production of male-sterility in plants.
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- 2022
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22. Semi-Blind Image de-blurring with IMU Prior
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Haiyan Shu and Zhengguo Li
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- 2022
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23. Chromosome-level assembly of triploid genome of sichuan pepper (Zanthoxylum armatum)
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Lizhi Song, Yue Huang, Hao Zuo, Ning Tang, Zhengguo Li, Wen-Biao Jiao, Feng Xu, Qiang Xu, and Zexiong Chen
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Ecology ,Renewable Energy, Sustainability and the Environment ,Plant Science ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
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24. The Molecular Mechanisms of Phytophthora infestans in Response to Reactive Oxygen Species Stress
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Maxime Bonnave, Huang Xiaoqing, Xiumei Luo, Tian Tingting, Zhengguo Li, Maozhi Ren, and Tan Xue
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Oomycete ,Autophagosome ,chemistry.chemical_classification ,Reactive oxygen species ,Appressorium ,Autophagy ,Plant Science ,Biology ,biology.organism_classification ,Cell biology ,Transcriptome ,chemistry ,Phytophthora infestans ,Gene silencing ,Agronomy and Crop Science - Abstract
Reactive oxygen species (ROSs) are critical for the growth, development, proliferation, and pathogenicity of microbial pathogens; however, excessive levels of ROSs are toxic. Little is known about the signaling cascades in response to ROS stress in oomycetes such as Phytophthora infestans, the causal agent of potato late blight. Here, P. infestans was used as a model system to investigate the mechanism underlying the response to ROS stress in oomycete pathogens. Results showed severe defects in sporangium germination, mycelium growth, appressorium formation, and virulence of P. infestans in response to H2O2 stress. Importantly, these phenotypes mimic those of P. infestans treated with rapamycin, the inhibitor of target of rapamycin (TOR, 1-phosphatidylinositol-3-kinase). Strong synergism occurred when P. infestans was treated with a combination of H2O2 and rapamycin, suggesting that a crosstalk exists between ROS stress and the TOR signaling pathway. Comprehensive analysis of transcriptome, proteome, and phosphorylation omics showed that H2O2 stress significantly induced the operation of the TOR-mediated autophagy pathway. Monodansylcadaverine staining showed that in the presence of H2O2 and rapamycin, the autophagosome level increased in a dosage-dependent manner. Furthermore, transgenic potatoes containing double-stranded RNA of TOR in P. infestans (PiTOR) displayed high resistance to P. infestans. Therefore, TOR is involved in the ROS response and is a potential target for control of oomycete diseases, because host-mediated silencing of PiTOR increases potato resistance to late blight.
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- 2021
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25. Simultaneous Smoothing and Sharpening Using iWGIF
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Zhengguo Li, Jinghong Zheng, and J. Senthilnath
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- 2022
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26. Single Image Dehazing via Model-Based Deep-Learning
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Zhengguo Li, Chaobing Zheng, Haiyan Shu, and Shiqian Wu
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- 2022
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27. Characterization of anthocyanin accumulation, nutritional properties, and postharvest attributes of transgenic purple tomato
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Wei Jian, Xiaogang Ou, Lixinyu Sun, Yu Chen, Shiyu Liu, Wang Lu, Xian Yang, Zhengwu Zhao, and Zhengguo Li
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General Medicine ,Food Science ,Analytical Chemistry - Abstract
Anthocyanins are natural pigments with diverse physiological roles and protective effects, but most tomatoes produce little. In this study, the anthocyanin characteristics, nutritional properties, and postharvest attributes of purple tomato (SlMYB75-OE) obtained by overexpression of SlMYB75 gene were first analyzed. Compared to wild-type (WT), eight monomeric anthocyanins were newly produced by overexpression of SlMYB75, and further study demonstrated the expression of dihydroflavonol-4-reductase (SlDFR) and two UDP-glycosyltransferase (SlUGTs) genes was activated by SlMYB75. The contents of sugars (sucrose, glucose, and fructose) and citric acid content in SlMYB75-OE were higher and lower, respectively, than in WT. In addition, FRAP and DPPH assays indicated SlMYB75-OE had higher antioxidant capacity, when compared to WT. Moreover, SlMYB75-OE exhibited a longer shelf life and stronger resistance to Botrytis cinerea than WT, and this characteristic was positively correlated with anthocyanin content. These results help to clarify the function of SlMYB75 and provide a reference for tomato breeding.
- Published
- 2022
28. Production of marker-free transgenic plants from mature tissues of navel orange using a Cre/loxP site-recombination system
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Yongrui He, Lanzhen Xu, Aihong Peng, Tiangang Lei, Qiang Li, Lixiao Yao, Guojin Jiang, Shanchun Chen, Zhengguo Li, and Xiuping Zou
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Ecology ,Renewable Energy, Sustainability and the Environment ,Plant Science ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
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29. Accurate IMU Factor Using Switched Linear Systems for VIO
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Wei-Yun Yau, Gerald Seet, Zhengguo Li, and John Henawy
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Covariance matrix ,Computer science ,business.industry ,020208 electrical & electronic engineering ,Linear system ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,02 engineering and technology ,Kinematics ,Motion capture ,Computer Science::Robotics ,symbols.namesake ,Odometry ,Control and Systems Engineering ,Inertial measurement unit ,Motion estimation ,Jacobian matrix and determinant ,0202 electrical engineering, electronic engineering, information engineering ,symbols ,Computer vision ,Artificial intelligence ,Electrical and Electronic Engineering ,business - Abstract
Accurate motion estimation plays a crucial role in state estimation of an unmanned aerial vehicle (UAV). This is usually carried out by fusing the kinematics of an inertial measurement unit (IMU) with the video output of a camera. However, the accuracy of existing approaches is hindered by the discretization effect of the model even at a high IMU sampling rate. In order to improve the accuracy, we propose a new IMU motion integration model for the IMU kinematics in continuous time. The kinematics are modeled using a switched linear system. A closed-form discrete formulation is derived to compute the mean measurement, the covariance matrix, and the Jacobian matrix. Thus, it is more accurate and more efficient for online estimation of visual-inertial odometry (VIO), particularly when there is a high dynamic change in the agent's motion or the agent travels with high speed. The proposed IMU factor framework is evaluated using both real public datasets and indoor environment under different scenarios of motion capture. Our evaluation shows that the proposed framework outperforms the state-of-the-art VIO approach by up to 22.71% accuracy improvement on the EuRoc dataset and 38.15% accuracy improvement for motion estimation under the indoor environment.
- Published
- 2021
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30. Advances in application of genome editing in tomato and recent development of genome editing technology
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Juanni Yao, Zhengguo Li, Xinhua Cheng, Rui Li, Yulin Cheng, and Xuehan Xia
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Crops, Agricultural ,0106 biological sciences ,Precision plant breeding ,Quantitative Trait Loci ,Mutagenesis (molecular biology technique) ,Review ,Computational biology ,Genes, Plant ,01 natural sciences ,Solanum lycopersicum ,Genome editing ,Genetics ,CRISPR ,Wild tomato ,Plant breeding ,Cas9 ,Domestication ,Gene ,Gene Editing ,biology ,fungi ,food and beverages ,General Medicine ,biology.organism_classification ,CRISPR-Cas Systems ,Gene function ,Agronomy and Crop Science ,Genome, Plant ,010606 plant biology & botany ,Biotechnology - Abstract
Genome editing, a revolutionary technology in molecular biology and represented by the CRISPR/Cas9 system, has become widely used in plants for characterizing gene function and crop improvement. Tomato, serving as an excellent model plant for fruit biology research and making a substantial nutritional contribution to the human diet, is one of the most important applied plants for genome editing. Using CRISPR/Cas9-mediated targeted mutagenesis, the re-evaluation of tomato genes essential for fruit ripening highlights that several aspects of fruit ripening should be reconsidered. Genome editing has also been applied in tomato breeding for improving fruit yield and quality, increasing stress resistance, accelerating the domestication of wild tomato, and recently customizing tomato cultivars for urban agriculture. In addition, genome editing is continuously innovating, and several new genome editing systems such as the recent prime editing, a breakthrough in precise genome editing, have recently been applied in plants. In this review, these advances in application of genome editing in tomato and recent development of genome editing technology are summarized, and their leaving important enlightenment to plant research and precision plant breeding is also discussed.
- Published
- 2021
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31. Biological control of potato late blight with a combination of Streptomyces strains and biochar
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Liang Jin, Shun Feng, Shicai Tang, Pan Dong, and Zhengguo Li
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Insect Science ,Agronomy and Crop Science - Published
- 2023
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32. Multi-scale Fusion of Stretched Infrared and Visible Images
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Weibin Jia, Zhihuan Song, and Zhengguo Li
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multi-scale fusion ,infrared image ,visible image ,content-adaptive gamma correction ,weight measures ,Normal Distribution ,Electrical and Electronic Engineering ,Biochemistry ,Instrumentation ,Atomic and Molecular Physics, and Optics ,Algorithms ,Analytical Chemistry - Abstract
Infrared (IR) band sensors can capture digital images under challenging conditions, such as haze, smoke, and fog, while visible (VIS) band sensors seize abundant texture information. It is desired to fuse IR and VIS images to generate a more informative image. In this paper, a novel multi-scale IR and VIS images fusion algorithm is proposed to integrate information from both the images into the fused image and preserve the color of the VIS image. A content-adaptive gamma correction is first introduced to stretch the IR images by using one of the simplest edge-preserving filters, which alleviates excessive luminance shifts and color distortions in the fused images. New contrast and exposedness measures are then introduced for the stretched IR and VIS images to achieve weight matrices that are more in line with their characteristics. The IR and luminance components of the VIS image in grayscale or RGB space are fused by using the Gaussian and Laplacian pyramids. The RGB components of the VIS image are finally expanded to generate the fused image if necessary. Comparisons experimentally demonstrate the effectiveness of the proposed algorithm to 10 different state-of-the-art fusion algorithms in terms of computational cost and quality of the fused images.
- Published
- 2022
33. Complete Genome Sequence Data of a Newly Isolated
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Shun, Feng, Pan, Dong, Liang, Jin, and Zhengguo, Li
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Biological Control Agents ,Oomycetes ,Benzeneacetamides ,Piperidones ,Streptomyces - Published
- 2022
34. Pruning rPPG Networks: Toward Small Dense Network with Limited Number of Training Samples
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Changchen Zhao, Pengcheng Cao, Shoushuai Xu, Zhengguo Li, and Yuanjing Feng
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- 2022
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35. Tomato transcriptional repressor MYB70 directly regulates ethylene‐dependent fruit ripening
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Haohao Cao, Yudong Liu, Zhengguo Li, Wei Jian, Jing Chen, Yulin Cheng, Bangqian Song, Min Yue, Chan Xu, and Yanqiang Gao
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0106 biological sciences ,0301 basic medicine ,Ethylene ,Plant Science ,Biology ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Solanum lycopersicum ,Plant Growth Regulators ,Gene Expression Regulation, Plant ,Genetics ,Transcriptional regulation ,MYB ,Transcription factor ,Plant Proteins ,food and beverages ,Promoter ,Ripening ,Sequence Analysis, DNA ,Cell Biology ,Ethylenes ,biology.organism_classification ,Cell biology ,Repressor Proteins ,030104 developmental biology ,chemistry ,Fruit ,Plant hormone ,Climacteric ,010606 plant biology & botany - Abstract
Ethylene is a key plant hormone controlling the ripening of climacteric fruits, and several transcription factors acting as important regulators of fruit ripening have been identified in tomato (Solanum lycopersicum), a model for climacteric fruits. The vast majority of these transcription factors are transcriptional activators, however, and the associated transcriptional regulatory mechanisms of most regulators are unclear. Here, we report on a tomato transcriptional repressor (termed SlMYB70) that negatively regulates fruit ripening by directly modulating ethylene biosynthesis. As an EAR motif-containing MYB transcription factor-encoding gene, SlMYB70 displayed a ripening-associated expression pattern and was responsive to ethylene. RNA interference (RNAi)-mediated repression of SlMYB70 accelerated fruit ripening, but overexpression of SlMYB70 delayed fruit ripening. Ethylene production was noticeably increased and decreased in SlMYB70-RNAi and SlMYB70-overexpressing lines, respectively, compared with wild-type tomatoes. SlMYB70 was proven to be a transcriptional repressor, dependent on the EAR repression motif, and to repress the transcription of two ethylene biosynthesis genes in fruit ripening, namely SlACS2 and SlACO3. The promoters of SlACS2 and SlACO3 are directly bound by SlMYB70, which was verified using a combination of yeast one-hybrid chromatin immunoprecipitation quantitative polymerase chain reaction and electrophoretic mobility shift assays. These results suggest that SlMYB70 negatively regulates fruit ripening via the direct transcriptional repression of ethylene biosynthesis genes, which provides insights into the ethylene-mediated key regulatory hierarchy in climacteric fruit ripening, and also highlights different types of transcriptional regulation of fruit ripening.
- Published
- 2020
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36. Asymptotic Parking of General Two-Trailer Systems Leveraging Singularity
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Zhengguo Li, Xiucai Huang, Changyun Wen, Renjie He, and School of Electrical and Electronic Engineering
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Singularity ,Computer science ,020208 electrical & electronic engineering ,Trailer ,General Two-Trailer System ,02 engineering and technology ,State (functional analysis) ,Tracking (particle physics) ,Set (abstract data type) ,Axle ,Control and Systems Engineering ,Control theory ,Electrical and electronic engineering [Engineering] ,0202 electrical engineering, electronic engineering, information engineering ,Trajectory ,Electrical and Electronic Engineering - Abstract
It is challenging to asymptotically stabilize a general two-trailer system consisting of a unicycle car and two identical trailers at a predefined pose efficiently because the system cannot be converted into a chain-form system. In this article, we design a two-phase parking strategy for such a system to park it at the target pose. The proposed strategy is inspired by a new insight on the singularity set of the general two-trailer system, i.e., the singularity set includes a subset that can be asymptotically stabilized directly. In the first phase, a tracking controller is adopted to let the state of the system approach the subset. A parking controller is then developed in the second phase to stabilize the system at the target pose asymptotically. Due to its simplicity and efficiency, the proposed controller has a good potential to be used in practice. Agency for Science, Technology and Research (A*STAR) This work was supported in part by the National Robotics Programme under SERC Grant 162 25 00036 and in part by the Aerospace Programme of the Science and Engineering Research Council, A-STAR, Singapore, under Grant A1715a0064.
- Published
- 2020
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37. Detail-Enhanced Multi-Scale Exposure Fusion in YUV Color Space
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Xingming Wu, Zhengguo Li, Weihai Chen, and Qiantong Wang
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Dynamic range ,business.industry ,Computer science ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Scale (descriptive set theory) ,02 engineering and technology ,Color space ,Exposure fusion ,Image (mathematics) ,Distortion ,Component (UML) ,0202 electrical engineering, electronic engineering, information engineering ,Media Technology ,020201 artificial intelligence & image processing ,Computer vision ,Artificial intelligence ,Electrical and Electronic Engineering ,business ,Smoothing - Abstract
It is recognized that existing multi-scale exposure fusion algorithms can be improved using edge-preserving smoothing techniques. However, the complexity of edge-preserving smoothing-based multi-scale exposure fusion is an issue for mobile devices. In this paper, a simpler multi-scale exposure fusion algorithm is designed in YUV color space. The proposed algorithm can preserve details in the brightest and darkest regions of a high dynamic range (HDR) scene and the edge-preserving smoothing-based multi-scale exposure fusion algorithm while avoiding color distortion from appearing in the fused image. The complexity of the proposed algorithm is about half of the edge-preserving smoothing-based multi-scale exposure fusion algorithm. The proposed algorithm is thus friendlier to the smartphones than the edge-preserving smoothing-based multi-scale exposure fusion algorithm. In addition, a simple detail-enhancement component is proposed to enhance fine details of fused images. The experimental results show that the proposed component can be adopted to produce an enhanced image with visibly enhanced fine details and a higher MEF-SSIM value. This is impossible for existing detail enhancement components. Clearly, the component is attractive for PC-based applications.
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- 2020
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38. R2R3 MYB‐dependent auxin signalling regulates trichome formation, and increased trichome density confers spider mite tolerance on tomato
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Bihong Feng, Yuwei Tang, Zehao Gong, Yudong Liu, Yujin Yuan, Xin Xu, Yingqing Luo, Cai-Zhong Jiang, Wei Deng, Wenfa Zhang, Xiaowei Hu, Fang Yan, Zhengguo Li, Mengbo Wu, and Xiaolan Zhang
- Subjects
0106 biological sciences ,0301 basic medicine ,MYB ,Plant Science ,tomato ,01 natural sciences ,trichome ,Cyclin Gene ,03 medical and health sciences ,Solanum lycopersicum ,Gene Expression Regulation, Plant ,Auxin ,Spider mite ,Botany ,Animals ,Gene ,Transcription factor ,Research Articles ,auxin response factor ,transcription factor ,chemistry.chemical_classification ,Indoleacetic Acids ,biology ,fungi ,food and beverages ,Trichomes ,biology.organism_classification ,Trichome ,Plant Leaves ,030104 developmental biology ,chemistry ,Tetranychidae ,Agronomy and Crop Science ,Function (biology) ,Research Article ,010606 plant biology & botany ,Biotechnology - Abstract
Summary Unicellular and multicellular tomato trichomes function as mechanical and chemical barriers against herbivores. Auxin treatment increased the formation of II, V and VI type trichomes in tomato leaves. The auxin response factor gene SlARF4, which was highly expressed in II, V and VI type trichomes, positively regulated the auxin‐induced formation of II, V and VI type trichomes in the tomato leaves. SlARF4 overexpression plants with high densities of these trichomes exhibited tolerance to spider mites. Two R2R3 MYB genes, SlTHM1 and SlMYB52, were directly targeted and inhibited by SlARF4. SlTHM1 was specifically expressed in II and VI type trichomes and negatively regulated the auxin‐induced formation of II and VI type trichomes in the tomato leaves. SlTHM1 down‐regulation plants with high densities of II and VI type trichomes also showed tolerance to spider mites. SlMYB52 was specifically expressed in V type trichomes and negatively regulated the auxin‐induced formation of V type trichome in the tomato leaves. The regulation of SlARF4 on the formation of II, V and VI type trichomes depended on SlTHM1 and SlMYB52, which directly targeted cyclin gene SlCycB2 and increased its expression. In conclusion, our data indicates that the R2R3 MYB‐dependent auxin signalling pathway regulates the formation of II, V and VI type trichomes in tomato leaves. Our study provides an effective method for improving the tolerance of tomato to spider mites.
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- 2020
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39. MaXB3 Modulates MaNAC2, MaACS1, and MaACO1 Stability to Repress Ethylene Biosynthesis during Banana Fruit Ripening
- Author
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Mondher Bouzayen, Zhengguo Li, Julien Pirrello, Wei Wei, Wei Deng, Wei Shan, Jian-fei Kuang, Wang-jin Lu, Zhong-Qi Fan, Jian-ye Chen, South China Agricultural University (SCAU), Chinese Academy of Agricultural Sciences (CAAS), Chongqing University [Chongqing], Génomique et Biotechnologie des Fruits (GBF), École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and National Key R&D Program of China (grant no. 2016YFD0400100), the National Natural Science Foundation of China (grant nos. 31830071, 31701652, and 31372111), the National Natural Science Foundation of Guangdong Province (grant no. 2017A030310353) and the China Agriculture Research System (grant no. CARS–31–11).
- Subjects
0106 biological sciences ,Regulation of gene expression ,Ethylene ,biology ,Physiology ,food and beverages ,Ripening ,Plant Science ,01 natural sciences ,Cell biology ,Ubiquitin ligase ,chemistry.chemical_compound ,chemistry ,Ubiquitin ,Biosynthesis ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Genetics ,biology.protein ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Post-translational regulation ,Climacteric ,010606 plant biology & botany - Abstract
Ethylene plays a critical regulatory role in climacteric fruit ripening, and its biosynthesis is fine-tuned at the transcriptional and posttranslational levels. Nevertheless, the mechanistic link between transcriptional and posttranslational regulation of ethylene biosynthesis during fruit ripening is largely unknown. This study uncovers a coordinated transcriptional and posttranslational mechanism of controlling ethylene biosynthesis during banana (Musa acuminata) fruit ripening. NAC (NAM, ATAF, and CUC) proteins MaNAC1 and MaNAC2 repress the expression of MaERF11, a protein previously known to negatively regulate ethylene biosynthesis genes MaACS1 and MaACO1. A RING E3 ligase MaXB3 interacts with MaNAC2 to promote its ubiquitination and degradation, leading to the inhibition of MaNAC2-mediated transcriptional repression. In addition, MaXB3 also targets MaACS1 and MaACO1 for proteasome degradation. Further evidence supporting the role of MaXB3 is provided by its transient and ectopic overexpression in banana fruit and tomato (Solanum lycopersicum), respectively, which delays fruit ripening via repressing ethylene biosynthesis and thus ethylene response. Strikingly, MaNAC1 and MaNAC2 directly repress MaXB3 expression, suggesting a feedback regulatory mechanism that maintains a balance of MaNAC2, MaACS1, and MaACO1 levels. Collectively, our findings establish a multilayered regulatory cascade involving MaXB3, MaNACs, MaERF11, and MaACS1/MaACO1 that controls ethylene biosynthesis during climacteric ripening.
- Published
- 2020
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40. BEL1-LIKE HOMEODOMAIN4 regulates chlorophyll accumulation, chloroplast development, and cell wall metabolism in tomato fruit
- Author
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Xiaoqin Pang, Wei Deng, Silin Zhong, Fang Yan, Zhengguo Li, Helen Chan, Wuriyanghan Hada, Ning Zhu, Mengbo Wu, Xin Xu, Yujin Yuan, Honghai Li, Guojian Hu, and Yushuo Gao
- Subjects
Chlorophyll ,chemistry.chemical_classification ,Chloroplasts ,biology ,Physiology ,Chlorophyll A ,food and beverages ,Ripening ,Plant Science ,biology.organism_classification ,Pectinesterase ,Chloroplast ,chemistry.chemical_compound ,Magnesium chelatase ,Solanum lycopersicum ,chemistry ,Protochlorophyllide reductase ,Biochemistry ,Cell Wall ,Gene Expression Regulation, Plant ,Fruit ,Solanum ,Carotenoid ,Plant Proteins - Abstract
Tomato (Solanum lycopersicum) is a model plant for studying fruit development and ripening. In this study, we found that down-regulation of a tomato bell-like homeodomain 4 (SlBL4) resulted in a slightly darker-green fruit phenotype and increased accumulation of starch, fructose, and glucose. Analysis of chlorophyll content and TEM observations was consistent with these phenotypes, indicating that SlBL4 was involved in chlorophyll accumulation and chloroplast formation. Ripened fruit of SlBL4-RNAi plants had noticeably decreased firmness, larger intercellular spaces, and thinner cell walls than the wild-type. RNA-seq identified differentially expressed genes involved in chlorophyll metabolism, chloroplast development, cell wall metabolism, and carotenoid metabolism. ChIP-seq identified (G/A) GCCCA (A/T/C) and (C/A/T) (C/A/T) AAAAA (G/A/T) (G/A) motifs. SlBL4 directly inhibited the expression of protoporphyrinogen oxidase (SlPPO), magnesium chelatase H subunit (SlCHLD), pectinesterase (SlPE), protochlorophyllide reductase (SlPOR), chlorophyll a/b binding protein 3B (SlCAB-3B), and homeobox protein knotted 2 (TKN2). In contrast, it positively regulated the expression of squamosa promoter binding protein-like colorless non-ripening (LeSPL-CNR). Our results indicate that SlBL4 is involved in chlorophyll accumulation, chloroplast development, cell wall metabolism, and the accumulation of carotenoids during tomato fruit ripening, and provide new insights for the transcriptional regulation mechanism of BELL-mediated fruit growth and ripening.
- Published
- 2020
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41. SlMYB72 Regulates the Metabolism of Chlorophylls, Carotenoids, and Flavonoids in Tomato Fruit
- Author
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Haohao Cao, Bihong Feng, Yingqing Luo, Xin Xu, Zhengguo Li, Wei Deng, Xiaowei Hu, Helen Chan, Zehao Gong, Yujin Yuan, Mengbo Wu, and Yudong Liu
- Subjects
Chlorophyll ,0106 biological sciences ,Chalcone synthase ,Physiology ,Plant Science ,Genes, Plant ,01 natural sciences ,chemistry.chemical_compound ,Solanum lycopersicum ,Gene Expression Regulation, Plant ,Chromoplast ,Genetics ,Carotenoid ,Research Articles ,Flavonoids ,chemistry.chemical_classification ,Phytoene synthase ,biology ,fungi ,food and beverages ,Ripening ,Carotenoids ,Chloroplast ,Flavonoid biosynthesis ,chemistry ,Biochemistry ,Fruit ,biology.protein ,010606 plant biology & botany - Abstract
Tomato (Solanum lycopersicum) fruit ripening is accompanied by the degradation of chlorophylls and the accumulation of carotenoids and flavonoids. Tomato SlMYB72 belongs to the R2R3 MYB subfamily, is located in the nucleus, and possesses transcriptional activator activity. Down-regulation of the SlMYB72 gene produced uneven-colored fruits; that is, dark green spots appeared on immature and mature green fruits, whereas yellow spots appeared on red fruits. Down-regulation of SlMYB72 increased chlorophyll accumulation, chloroplast biogenesis and development, and photosynthesis rate in fruits. This down-regulation decreased lycopene content, promoted β-carotene production and chromoplast development, and increased flavonoid accumulation in fruits. RNA sequencing analysis revealed that down-regulation of SlMYB72 altered the expression levels of genes involved in the biosynthesis of chlorophylls, carotenoids, and flavonoids. SlMYB72 protein interacted with the auxin response factor SlARF4. SlMYB72 directly targeted protochlorophyllide reductase, Mg-chelatase H subunit, and knotted1-like homeobox2 genes and regulated chlorophyll biosynthesis and chloroplast development. SlMYB72 directly bound to phytoene synthase, ζ-carotene isomerase, and lycopene β-cyclase genes and regulated carotenoid biosynthesis. SlMYB72 directly targeted 4-coumarate-coenzyme A ligase and chalcone synthase genes and regulated the biosynthesis of flavonoids and phenolic acid. The uneven color phenotype in RNA interference-SlMYB72 fruits was due to uneven silencing of SlMYB72 and uneven expression of chlorophyll, carotenoid, and flavonoid biosynthesis genes. In summary, this study identified important roles for SlMYB72 in the regulation of chlorophyll, carotenoid, and flavonoid metabolism and provided a potential target to improve fruit nutrition in horticultural crops.
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- 2020
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42. Image noise level estimation via kurtosis test
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Jiaxin Wu, Shoulie Xie, Zhengguo Li, and Shiqian Wu
- Subjects
Electrical and Electronic Engineering ,Atomic and Molecular Physics, and Optics ,Computer Science Applications - Published
- 2022
- Full Text
- View/download PDF
43. Metabolism and Regulation of Ascorbic Acid in Fruits
- Author
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Xianzhe Zheng, Min Gong, Qiongdan Zhang, Huaqiang Tan, Liping Li, Youwan Tang, Zhengguo Li, Mingchao Peng, and Wei Deng
- Subjects
Ecology ,Plant Science ,Ecology, Evolution, Behavior and Systematics - Abstract
Ascorbic acid, also known as vitamin C, is a vital antioxidant widely found in plants. Plant fruits are rich in ascorbic acid and are the primary source of human intake of ascorbic acid. Ascorbic acid affects fruit ripening and stress resistance and plays an essential regulatory role in fruit development and postharvest storage. The ascorbic acid metabolic pathway in plants has been extensively studied. Ascorbic acid accumulation in fruits can be effectively regulated by genetic engineering technology. The accumulation of ascorbic acid in fruits is regulated by transcription factors, protein interactions, phytohormones, and environmental factors, but the research on the regulatory mechanism is still relatively weak. This paper systematically reviews the regulation mechanism of ascorbic acid metabolism in fruits in recent decades. It provides a rich theoretical basis for an in-depth study of the critical role of ascorbic acid in fruits and the cultivation of fruits rich in ascorbic acid.
- Published
- 2022
44. Recent Advances in Minimizing Cadmium Accumulation in Wheat
- Author
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Zhengguo Li and Min Zhou
- Subjects
Chemical Health and Safety ,Health, Toxicology and Mutagenesis ,food and beverages ,Toxicology - Abstract
Cadmium (Cd), a toxic heavy metal, affects the yield and quality of crops. Wheat (Triticum aestivum L.) can accumulate high Cd content in the grain, which poses a major worldwide hazard to human health. Advances in our understanding of Cd toxicity for plants and humans, different parameters influencing Cd uptake and accumulation, as well as phytoremediation technologies to relieve Cd pollution in wheat have been made very recently. In particular, the molecular mechanisms of wheat under Cd stress have been increasingly recognized. In this review, we focus on the recently described omics and functional genes uncovering Cd stress, as well as different mitigation strategies to reduce Cd toxicity in wheat.
- Published
- 2022
45. The secreted peptide IRP1 functions as a phytocytokine in rice immunity
- Author
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Pingyu, Wang, Huimin, Jia, Ting, Guo, Yuanyuan, Zhang, Wanqing, Wang, Hideki, Nishimura, Zhengguo, Li, and Yoji, Kawano
- Abstract
Small signaling peptides play important roles in various plant processes, but information regarding their involvement in plant immunity is limited. We previously identified a novel small secreted protein in rice, named immune response peptide 1 (IRP1). Here, we studied IRP1 functions in rice immunity. Rice plants overexpressing IRP1 enhanced resistance to the virulent rice blast fungus. Application of IRP1 peptide to rice suspension cells triggered the expression of IRP1 itself and the defense gene PAL1. RNA-seq results revealed that 84% of genes upregulated by IRP1 peptide were also induced by a microbe-associated molecular pattern(MAMP) chitin, including 13 OsWRKY transcription factors, indicating that IRP1 and chitin share a similar signaling pathway. Co-treatment with chitin and IRP1 elevated the expression level of PAL1 and OsWRKYs in an additive manner. The increased chitin concentration arrested the induction of IRP1 and PAL1 expressions by IRP1, but cannot affect IRP1-triggered MAPK activation. Collectively, our findings indicate that IRP1 functions as a phytocyokine in rice immunity regulating MAPKs and OsWRKYs that could amplify chitin and other signaling pathways, and provide new insights into how MAMPs and phytocyokines cooperatively regulate rice immunity.
- Published
- 2022
46. Synthesis of 4-methylvaleric acid, a precursor of pogostone, involves a 2-isobutylmalate synthase related to 2-isopropylmalate synthase of leucine biosynthesis
- Author
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Chu Wang, Ying Wang, Jing Chen, Lang Liu, Mingxia Yang, Zhengguo Li, Chengyuan Wang, Eran Pichersky, and Haiyang Xu
- Subjects
Kinetics ,Physiology ,Leucine ,Oils, Volatile ,Plant Science ,2-Isopropylmalate Synthase - Abstract
We show here that the side chain of pogostone, one of the major components of patchouli oil obtained from Pogostemon cablin and possessing a variety of pharmacological activities, is derived from 4-methylvaleric acid. We also show that 4-methylvaleric acid is produced through the one-carbon α-ketoacid elongation pathway with the involvement of the key enzyme 2-isobutylmalate synthase (IBMS), a newly identified enzyme related to isopropylmalate synthase (IPMS) of leucine (Leu) biosynthesis. Site-directed mutagenesis identified Met
- Published
- 2022
47. Brt9SIDA/IDALs as peptide signals mediate diverse biological pathways in plants
- Author
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Pingyu Wang, Ting Wu, Chen Jiang, Baowen Huang, and Zhengguo Li
- Subjects
Genetics ,Plant Science ,General Medicine ,Agronomy and Crop Science - Published
- 2023
- Full Text
- View/download PDF
48. The SlHB8 acts as a negative regulator in tapetum development and pollen wall formation in Tomato
- Author
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Caiyu, Wu, Yang, Yang, Deding, Su, Canye, Yu, Zhiqiang, Xian, Zanlin, Pan, Hongling, Guan, Guojian, Hu, Da, Chen, Zhengguo, Li, Riyuan, Chen, and Yanwei, Hao
- Subjects
Genetics ,Plant Science ,Horticulture ,Biochemistry ,Biotechnology - Abstract
Pollen development is crucial for the fruit setting process of tomatoes, but the underlying regulatory mechanism remains to be elucidated. Here, we report the isolation of one HD-Zip III family transcription factor, SlHB8, whose expression levels decreased as pollen development progressed. SlHB8 knockout using CRISPR/Cas9 increased pollen activity, subsequently inducing fruit setting, whereas overexpression displayed opposite phenotypes. Overexpression lines under control of the 35 s and p2A11 promoters revealed that SlHB8 reduced pollen activity by affecting early pollen development. Transmission electron microscopy and TUNEL analyses showed that SlHB8 accelerated tapetum degradation, leading to collapsed and infertile pollen without an intine and an abnormal exine. RNA-seq analysis of tomato anthers at the tetrad stage showed that SlHB8 positively regulates SPL/NZZ expression and the tapetum programmed cell death conserved genetic pathway DYT1–TDF1–AMS–MYB80 as well as other genes related to tapetum and pollen wall development. In addition, DNA affinity purification sequencing, electrophoretic mobility shift assay, yeast one-hybrid assay and dual-luciferase assay revealed SlHB8 directly activated the expression of genes related to pollen wall development. The study findings demonstrate that SlHB8 is involved in tapetum development and degradation and plays an important role in anther development.
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- 2022
- Full Text
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49. Dual-Scale Single Image Dehazing Via Neural Augmentation
- Author
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Zhengguo Li, Chaobing Zheng, Haiyan Shu, and Shiqian Wu
- Subjects
FOS: Computer and information sciences ,Computer Vision and Pattern Recognition (cs.CV) ,Image and Video Processing (eess.IV) ,Computer Science - Computer Vision and Pattern Recognition ,FOS: Electrical engineering, electronic engineering, information engineering ,Electrical Engineering and Systems Science - Image and Video Processing ,Computer Graphics and Computer-Aided Design ,Software - Abstract
Model-based single image dehazing algorithms restore haze-free images with sharp edges and rich details for real-world hazy images at the expense of low PSNR and SSIM values for synthetic hazy images. Data-driven ones restore haze-free images with high PSNR and SSIM values for synthetic hazy images but with low contrast, and even some remaining haze for real world hazy images. In this paper, a novel single image dehazing algorithm is introduced by combining model-based and data-driven approaches. Both transmission map and atmospheric light are first estimated by the model-based methods, and then refined by dual-scale generative adversarial networks (GANs) based approaches. The resultant algorithm forms a neural augmentation which converges very fast while the corresponding data-driven approach might not converge. Haze-free images are restored by using the estimated transmission map and atmospheric light as well as the Koschmiederlaw. Experimental results indicate that the proposed algorithm can remove haze well from real-world and synthetic hazy images., Comment: Single image dehazing, dual-scale, neural augmentation, haze line averaging, generative adversarial network. arXiv admin note: substantial text overlap with arXiv:2111.10943
- Published
- 2022
- Full Text
- View/download PDF
50. Co-silencing of ABA receptors (SlRCAR) reveals interactions between ABA and ethylene signaling during tomato fruit ripening
- Author
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Jian Zou, Ning Li, Nan Hu, Ning Tang, Haohao Cao, Yudong Liu, Jing Chen, Wei Jian, Yanqiang Gao, Jun Yang, and Zhengguo Li
- Subjects
Genetics ,Plant Science ,Horticulture ,Biochemistry ,Biotechnology - Abstract
The ripening of fleshy fruits is highly dependent on the regulation of endogenous hormones, including ethylene, abscisic acid (ABA) and other phytohormones. However, the regulatory mechanism of ABA signaling and its interaction with ethylene signaling in fruit ripening are still unclear. In this study, multi-gene interference (RNAi) was applied to silence the ABA receptor genes in tomato for screening the specific receptors that mediate ABA signaling during fruit ripening. The results indicated that the ABA receptors, including SlRCAR9, SlRCAR12, SlRCAR11, and SlRCAR13, participate in the regulation of tomato fruit ripening. Comparative analysis showed that SlRCAR11 and SlRCAR13 play more important roles in mediating ABA signaling during tomato fruit ripening. Co-silencing of the four genes encoding these receptors could weaken the ethylene biosynthesis and signaling pathway at the early stage of tomato fruit ripening, leading to delayed fruit ripening. Meanwhile, co-silencing enhanced fruit firmness, and altered the shelf-life and susceptibility to Botrytis cinerea of the transgenic fruits. Furthermore, blocking ABA signaling did not affect the ability of ethylene to induce fruit ripening, whereas the block may inhibit the effectiveness of ABA in promoting fruit ripening. These results suggested that ABA signaling may be located upstream of ethylene signaling in regulating fruit ripening. Our findings provide a new insight into the complex regulatory network of phytohormones in regulating fruit ripening in tomato.
- Published
- 2022
- Full Text
- View/download PDF
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