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Reproducibility of results is a cornerstone of the scientific method. Scientific computing encounters two challenges when aiming for this goal. Firstly, reproducibility should not depend on details of the runtime environment, such as the compiler version or computing environment, so results are verifiable by third-parties. Secondly, different versions of software code executed in the same runtime environment should produce consistent numerical results for physical quantities. In this manuscript, we test the feasibility of reproducing scientific results obtained using the IllinoisGRMHD code that is part of an open-source community software for simulation in relativistic astrophysics, the Einstein Toolkit. We verify that numerical results of simulating a single isolated neutron star with IllinoisGRMHD can be reproduced, and compare them to results reported by the code authors in 2015. We use two different supercomputers: Expanse at SDSC, and Stampede2 at TACC. By compiling the source code archived along with the paper on both Expanse and Stampede2, we find that IllinoisGRMHD reproduces results published in its announcement paper up to errors comparable to round-off level changes in initial data parameters. We also verify that a current version of IllinoisGRMHD reproduces these results once we account for bug fixes which have occurred since the original publication. [ABSTRACT FROM AUTHOR]

The first binary neutron star merger has already been detected in gravitational waves. The signal was accompanied by an electromagnetic counterpart including a kilonova component powered by the decay of radioactive nuclei, as well as a short Îł -ray burst. In order to understand the radioactively powered signal, it is necessary to simulate the outflows and their nucleosynthesis from the post-merger disk. Simulating the disk and predicting the composition of the outflows requires general relativistic magnetohydrodynamical (GRMHD) simulations that include a realistic, finite-temperature equation of state (EOS) and self-consistently calculating the impact of neutrinos. In this work, we detail the implementation of a finite-temperature EOS and the treatment of neutrinos in the GRMHD code HARM3D+NUC, based on HARM3D. We include formal tests of both the finite-temperature EOS and the neutrino-leakage scheme. We further test the code by showing that, given conditions similar to those of published remnant disks following neutron star mergers, it reproduces both recombination of free nucleons to a neutron-rich composition and excitation of a thermal wind. [ABSTRACT FROM AUTHOR]

We recently developed a new general relativistic magnetohydrodynamic code with adaptive mesh refinement that evolves the electromagnetic (EM) vector potential A, instead of the magnetic fields directly. Evolving A; enables one to use any interpolation scheme on refinement level boundaries and still guarantee that the magnetic field remains divergenceless. As in classical EM, a gauge choice must be made when evolving A,, and we chose a straightforward "algebraic" gauge condition to simplify the A, evolution equation. However, magnetized black hole-neutron star (BHNS) simulations in this gauge exhibit unphysical behavior, including the spurious appearance of strong magnetic fields on refinement level boundaries. This spurious behavior is exacerbated when matter crosses refinement boundaries during tidal disruption of the neutron star. Applying Kreiss-Oliger dissipation to the evolution of the magnetic vector potential A, slightly weakens this spurious magnetic effect, but with undesired consequences. We demonstrate via an eigenvalue analysis and a numerical study that zero-speed modes in the algebraic-gauge, coupled with the frequency filtering that occurs on refinement level boundaries, are responsible for the creation of spurious magnetic fields. We show that the EM Lorenz gauge exhibits no zero-speed modes, and as a consequence, spurious magnetic effects are quickly propagated away, allowing for long-term, stable magnetized BHNS evolutions. Our study demonstrates how the EM gauge degree of freedom can be chosen to one's advantage, and that for magnetized BHNS simulations the Lorenz gauge constitutes a major improvement over the algebraic gauge. [ABSTRACT FROM AUTHOR]