34 results on '"Wang, Yun F."'
Search Results
2. SARS-CoV-2 seroprevalence among healthcare personnel at a large health system in Atlanta
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Graciaa, Daniel S., Kempker, Russell R., Wang, Yun F., Schurr, Hanna, Krishnan, Snehaa D., Carroll, Kelley, Toomer, Linda, Merritt, Stephanie, King, Denise, Hunter, Mary, and Rebolledo, Paulina A.
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- 2022
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3. Effects of Patient Characteristics on Diagnostic Performance of Self-Collected Samples for SARS-CoV-2 Testing
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Smith-Jeffcoat, Sarah E., Koh, Mitsuki, Hoffman, Adam, Rebolledo, Paulina A., Schechter, Marcos C., Miller, Halie K., Sleweon, Sadia, Rossetti, Rebecca, Kasinathan, Vyjayanti, Shragai, Talya, O'Laughlin, Kevin, Espinosa, Catherine C., Khalil, George M., Adeyemo, AdeSubomi O., Moorman, Anne, Bauman, Brenda L., Joseph, Kahaliah, O'Hegarty, Michelle, Kamal, Nazia, Atallah, Hany, Moore, Brooks L., Bohannon, Caitlin D., Bankamp, Bettina, Hartloge, Claire, Bowen, Michael D., Paulick, Ashley, Gargis, Amy S., Elkins, Christopher, Stewart, Rebekah J., da Silva, Juliana, Biedron, Caitlin, Tate, Jacqueline E., Wang, Yun F., and Kirking, Hannah L.
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Self-examination, Medical -- Methods ,Medical testing products -- Usage ,Health - Abstract
Detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes coronavirus disease (COVID-19), originally relied mainly on nasopharyngeal swab (NPS) samples collected by healthcare workers (HCWs). However, [...]
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- 2021
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4. Multidisciplinary assessment of the Abbott BinaxNOW SARS-CoV-2 point-of-care antigen test in the context of emerging viral variants and self-administration
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Frediani, Jennifer K., Levy, Joshua M., Rao, Anuradha, Bassit, Leda, Figueroa, Janet, Vos, Miriam B., Wood, Anna, Jerris, Robert, Van Leung-Pineda, Gonzalez, Mark D., Rogers, Beverly B., Mavigner, Maud, Schinazi, Raymond F., Schoof, Nils, Waggoner, Jesse J., Kempker, Russell R., Rebolledo, Paulina A., O’Neal, Jared W., Stone, Cheryl, Chahroudi, Ann, Morris, Claudia R., Suessmith, Allie, Sullivan, Julie, Farmer, Sarah, Foster, Amanda, Roback, John D., Ramachandra, Thanuja, Washington, CaDeidre, Le, Kristie, Cordero, Maria C., Esper, Annette, Nehl, Eric J., Wang, Yun F., Tyburski, Erika A., Martin, Greg S., and Lam, Wilbur A.
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- 2021
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5. Evaluation of Xpert MTB/RIF Versus AFB Smear and Culture to Identify Pulmonary Tuberculosis in Patients With Suspected Tuberculosis From Low and Higher Prevalence Settings
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Luetkemeyer, Anne F, Firnhaber, Cynthia, Kendall, Michelle A, Wu, Xingye, Mazurek, Gerald H, Benator, Debra A, Arduino, Roberto, Fernandez, Michel, Guy, Elizabeth, Johnson, Pamela, Metchock, Beverly, Sattler, Fred, Telzak, Edward, Wang, Yun F, Weiner, Marc, Swindells, Susan, Sanne, Ian M, Havlir, Diane V, Grinsztejn, Beatriz, and Alland, David
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Biomedical and Clinical Sciences ,Clinical Sciences ,Lung ,Rare Diseases ,Prevention ,Biodefense ,HIV/AIDS ,Clinical Research ,Vaccine Related ,Infectious Diseases ,Tuberculosis ,Emerging Infectious Diseases ,Detection ,screening and diagnosis ,4.2 Evaluation of markers and technologies ,Infection ,Good Health and Well Being ,Adult ,Antibiotics ,Antitubercular ,Brazil ,DNA ,Bacterial ,Drug Resistance ,Bacterial ,Female ,Humans ,Male ,Middle Aged ,Mutation ,Mycobacterium tuberculosis ,Nucleic Acid Amplification Techniques ,Prevalence ,Rifampin ,Sensitivity and Specificity ,South Africa ,Sputum ,Tuberculosis ,Pulmonary ,United States ,Xpert MTB/RIF ,tuberculosis diagnosis ,respiratory isolation ,nontuberculous mycobacteria ,HIV/tuberculosis coinfection ,AIDS Clinical Trials Group A5295 and Tuberculosis Trials Consortium Study 34 Teams ,Biological Sciences ,Medical and Health Sciences ,Microbiology ,Clinical sciences - Abstract
BackgroundThe Xpert MTB/RIF (Xpert) assay is a rapid nucleic acid amplification test widely used in settings of high tuberculosis prevalence to detect tuberculosis as well asrpoBmutations associated with rifampin resistance. Data are needed on the diagnostic performance of Xpert in lower-prevalence settings to inform appropriate use for both tuberculosis detection and the need for respiratory isolation.MethodsXpert was compared to 2 sputum samples, each evaluated with acid-fast bacilli (AFB) smear and mycobacterial culture using liquid and solid culture media, from participants with suspected pulmonary tuberculosis from the United States, Brazil, and South Africa.ResultsOf 992 participants enrolled with evaluable results, 22% had culture-confirmed tuberculosis. In 638 (64%) US participants, 1 Xpert result demonstrated sensitivity of 85.2% (96.7% in participants with AFB smear-positive [AFB(+)] sputum, 59.3% with AFB smear-negative [AFB(-)] sputum), specificity of 99.2%, negative predictive value (NPV) of 97.6%, and positive predictive value of 94.9%. Results did not differ between higher- and low-prevalence settings. A second Xpert assay increased overall sensitivity to 91.1% (100% if AFB(+), 71.4% if AFB(-)), with specificity of 98.9%. In US participants, a single negative Xpert result predicted the absence of AFB(+)/culture-positive tuberculosis with an NPV of 99.7%; NPV of 2 Xpert assays was 100%, suggesting a role in removing patients from airborne infection isolation. Xpert detected tuberculosis DNA and mutations associated with rifampin resistance in 5 of 7 participants with rifampin-resistant, culture-positive tuberculosis. Specificity for rifampin resistance was 99.5% and NPV was 98.9%.ConclusionsIn the United States, Xpert testing performed comparably to 2 higher-tuberculosis-prevalence settings. These data support the use of Xpert in the initial evaluation of tuberculosis suspects and in algorithms assessing need for respiratory isolation.
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- 2016
6. An Alternative to Cytology in Triaging Cisgender Men and Transgender Women With HIV for High-Resolution Anoscopy.
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Mudrinich, Shane M., Nguyen, Minh Ly T., Blemur, Danielle M., Xinzhu Wang, Wang, Yun F., Krishnamurti, Uma, Mosunjac, Marina, and Flowers, Lisa C.
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- 2024
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7. Time to Sputum Culture Conversion and Treatment Outcomes Among Patients with Isoniazid-Resistant Tuberculosis in Atlanta, Georgia
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Schechter, Marcos C., Bizune, Destani, Kagei, Michelle, Machaidze, Mamuka, Holland, David P., Oladele, Alawode, Wang, Yun F., Rebolledo, Paulina A., Ray, Susan M., and Kempker, Russell R.
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- 2017
8. Evaluation of Xpert MTB/RIF Versus AFB Smear and Culture to Identify Pulmonary Tuberculosis in Patients With Suspected Tuberculosis From Low and Higher Prevalence Settings
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AIDS Clinical Trials Group A5295 and Tuberculosis Trials Consortium Study 34 Teams, Luetkemeyer, Anne F., Firnhaber, Cynthia, Kendall, Michelle A., Wu, Xingye, Mazurek, Gerald H., Benator, Debra A., Arduino, Roberto, Fernandez, Michel, Guy, Elizabeth, Johnson, Pamela, Metchock, Beverly, Sattler, Fred, Telzak, Edward, Wang, Yun F., Weiner, Marc, Swindells, Susan, Sanne, Ian M., Havlir, Diane V., Grinsztejn, Beatriz, and Alland, David
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- 2016
9. Severe Acute Respiratory Syndrome Coronavirus 2 Evolution and Escape From Combination Monoclonal Antibody Treatment in a Person With HIV.
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Khosravi, Dara, Soloff, Hannah, Langsjoen, Rose M, Bombin, Andrei, Kelley, Colleen F, Ray, Susan M, Gunthel, Clifford J, Zanoni, Brian C, Nguyen, Phuong-Vi, Waggoner, Jesse J, Wang, Yun F, Cantos, Valeria D, and Piantadosi, Anne
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Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) escape from combination monoclonal antibody treatment is rarely reported. We describe an immunocompromised individual with human immunodeficiency virus and persistent SARS-CoV-2 infection in whom substantial SARS-CoV-2 evolution occurred, including the emergence of 2 mutations associated with escape from the monoclonal antibody cocktail received. [ABSTRACT FROM AUTHOR]
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- 2023
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10. Biomarkers on patient T cells diagnose active tuberculosis and monitor treatment response
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Adekambi, Toidi, Ibegbu, Chris C., Cagle, Stephanie, Kalokhe, Ameeta S., Wang, Yun F., Hu, Yijuan, Day, Cheryl L., Ray, Susan M., and Rengarajan, Jyothi
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Tuberculosis -- Health aspects -- Drug therapy -- Diagnosis -- Research ,T cells -- Health aspects -- Physiological aspects -- Research ,Biological markers -- Health aspects -- Physiological aspects -- Research ,Health care industry - Abstract
BACKGROUND. The identification and treatment of individuals with tuberculosis (TB) is a global public health priority. Accurate diagnosis of pulmonary active TB (ATB) disease remains challenging and relies on extensive medical evaluation and detection of Mycobacterium tuberculosis (Mtb) in the patient's sputum. Further, the response to treatment is monitored by sputum culture conversion, which takes several weeks for results. Here, we sought to identify blood-based host biomarkers associated with ATB and hypothesized that immune activation markers on Mtb-specific [CD4.sup.+] T cells would be associated with Mtb load in vivo and could thus provide a gauge of Mtb infection. METHODS. Using polychromatic flow cytometry, we evaluated the expression of immune activation markers on Mtb-specific [CD4.sup.+] T cells from individuals with asymptomatic latent Mtb infection (LTBI) and ATB as well as from ATB patients undergoing anti-TB treatment. RESULTS. Frequencies of Mtb-specific IFN-[[gamma].sup.+][CD4.sup.+] T cells that expressed immune activation markers CD38 and HLA-DR as well as intracellular proliferation marker Ki-67 were substantially higher in subjects with ATB compared with those with LTBI. These markers accurately classified ATB and LTBI status, with cutoff values of 18%, 60%, and 5% for [CD38.sup.+]IFN-[[gamma].sup.+], [HLA-DR.sup.+]IFN-[[gamma].sup.+], and [Ki-67.sup.+]IFN-[[gamma].sup.+], respectively, with 100% specificity and greater than 96% sensitivity. These markers also distinguished individuals with untreated ATB from those who had successfully completed anti-TB treatment and correlated with decreasing mycobacterial loads during treatment. CONCLUSION. We have identified host blood-based biomarkers on Mtb-specific [CD4.sup.+] T cells that discriminate between ATB and LTBI and provide a set of tools for monitoring treatment response and cure. TRIAL REGISTRATION. Registration is not required for observational studies. FUNDING. This study was funded by Emory University, the NIH, and the Yerkes National Primate Center., Introduction Diagnosis of pulmonary active tuberculosis (ATB) currently relies on evaluation of clinical symptoms, radiological assessments, and detection of Mycobacterium tuberculosis (Mtb) in patient respiratory samples, such as sputum. Microscopic [...]
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- 2015
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11. Utility of a Viral Vesicular Panel Multiplex Polymerase Chain Reaction Assay for the Diagnosis of Monkeypox, Herpes Simplex, and Varicella Zoster Viruses.
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Wilber, Eli, Rebolledo, Paulina A, Kasinathan, Vyjayanti, Merritt, Stephanie, Titanji, Boghuma K, Aldred, Bruce, Kandiah, Sheetal, Ray, Susan M, Sheth, Anandi N, Colasanti, Jonathan A, and Wang, Yun F
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Mpox (monkeypox) represents a diagnostic challenge due to varied clinical presentations and multiple mimics. A commercially available multiplex polymerase chain reaction panel accurately detects mpox virus as well as common mimics (herpes simplex virus, varicella zoster virus) in clinical specimens and could be used in routine clinical, surveillance, and outbreak settings. [ABSTRACT FROM AUTHOR]
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- 2023
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12. Induction of human plasmablasts during infection with antibiotic-resistant nosocomial bacteria
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Band, Victor I., Ibegbu, Chris, Kaur, Surinder Pal, Cagle, Stephanie M., Trible, Ronald, Jones, Crystal L., Wang, Yun F., Kraft, Colleen S., Ray, Susan M., Wrammert, Jens, and Weiss, David S.
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- 2014
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13. Specimen self-collection for SARS-CoV-2 testing: Patient performance and preferences—Atlanta, Georgia, August-October 2020.
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O'Laughlin, Kevin, Espinosa, Catherine C., Smith-Jeffcoat, Sarah E., Koh, Mitsuki, Khalil, George M., Hoffman, Adam, Rebolledo, Paulina A., Schechter, Marcos C., Stewart, Rebekah J., da Silva, Juliana, Biedron, Caitlin, Bankamp, Bettina, Folster, Jennifer, Gargis, Amy S., Bowen, Michael D., Paulick, Ashley, Wang, Yun F., Tate, Jacqueline E., and Kirking, Hannah L.
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COVID-19 testing ,PATIENT preferences ,MEDICAL personnel ,SELF-efficacy ,SALIVA - Abstract
Self-collected specimens can expand access to SARS-CoV-2 testing. At a large inner-city hospital 1,082 participants self-collected saliva and anterior nasal swab (ANS) samples before healthcare workers collected nasopharyngeal swab (NPS) samples on the same day. To characterize patient preferences for self-collection, this investigation explored ability, comfort, and ease of ANS and saliva self-collection for SARS-CoV-2 testing along with associated patient characteristics, including medical history and symptoms of COVID-19. With nearly all participants successfully submitting a specimen, favorable ratings from most participants (at least >79% in ease and comfort), and equivocal preference between saliva and ANS, self-collection is a viable SARS-CoV-2 testing option. [ABSTRACT FROM AUTHOR]
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- 2022
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14. Diagnostic stewardship for human immunodeficiency virus (HIV) testing using computerized physician order entry.
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Wilber, Eli P., Adhyaru, Bhavin B., Wang, Yun F., Sellars-Williams, Celeste, and Rebolledo, Paulina A.
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- 2023
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15. Bloodstream Infections in Children With Sickle Cell Disease: 2010-2019.
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Yee, Marianne E., Lai, Kristina W., Bakshi, Nitya, Grossman, Joanna K., Jaggi, Preeti, Mallis, Alexander, Wang, Yun F., Jerris, Robert C., Lane, Peter A., and Yildirim, Inci
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- 2022
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16. Diagnosis of Streptococcus pneumoniae infection using circulating antibody secreting cells.
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Kyu, Shuya, Ramonell, Richard P., Kuruvilla, Merin, Kraft, Colleen S., Wang, Yun F., Falsey, Ann R., Walsh, Edward E., Daiss, John L., Paulos, Simon, Rajam, Gowrisankar, Wu, Hao, Velusamy, Srinivasan, and Lee, F. Eun-Hyung
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ADULTS ,STREPTOCOCCUS pneumoniae ,BACTERIAL diseases ,DIAGNOSIS - Abstract
Background: Streptococcus pneumoniae infections cause morbidity and mortality worldwide. A rapid, simple diagnostic method could reduce the time needed to introduce definitive therapy potentially improving patient outcomes. Methods: We introduce two new methods for diagnosing S. pneumoniae infections by measuring the presence of newly activated, pathogen-specific, circulating Antibody Secreting Cells (ASC). First, ASC were detected by ELISpot assays that measure cells secreting antibodies specific for signature antigens. Second, the antibodies secreted by isolated ASC were collected in vitro in a novel matrix, MENSA (media enriched with newly synthesized antibodies) and antibodies against S. pneumoniae antigens were measured using Luminex immunoassays. Each assay was evaluated using blood from S. pneumoniae and non-S. pneumoniae-infected adult patients. Results: We enrolled 23 patients with culture-confirmed S. pneumoniae infections and 24 controls consisting of 12 non-S. pneumoniae infections, 10 healthy donors and two colonized with S. pneumoniae. By ELISpot assays, twenty-one of 23 infected patients were positive, and all 24 controls were negative. Using MENSA samples, four of five S. pneumoniae-infected patients were positive by Luminex immunoassays while all five non-S. pneumoniae-infected patients were negative. Conclusion: Specific antibodies produced by activated ASC may provide a simple diagnostic for ongoing S. pneumoniae infections. This method has the potential to diagnose acute bacterial infections. [ABSTRACT FROM AUTHOR]
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- 2021
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17. Functional–structural relationship in large‐scale brain networks of patients with end stage renal disease after kidney transplantation: A longitudinal study.
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Chen, Hui J., Wang, Yun F., Wen, Jiqiu, Xu, Qiang, Lu, Guang M., and Zhang, Long J.
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CHRONIC kidney failure , *KIDNEY transplantation , *DIFFUSION tensor imaging , *FUNCTIONAL magnetic resonance imaging , *KIDNEY diseases , *LARGE-scale brain networks - Abstract
It is unclear how the brain network changed after kidney transplantation (KT). We explored the patterns of large‐scale complex network after KT in end‐stage renal disease (ESRD) patients with resting‐state functional MRI (rs‐fMRI) and diffusion tensor imaging (DTI). Twenty‐one ESRD patients (14 men; mean age, 31.5 ± 9.9 years) scheduled for KT and 17 age‐ and gender‐matched healthy controls (HC) (8 men; mean age, 28.9 ± 7.2 years) were enrolled in this study. Each participant underwent rs‐fMRI and DTI scans in three time points (pre‐KT, 1 and 6 months after KT [for ESRD]). Graph theory analysis was used to characterize the topological properties by using functional and structural network connectivities intergroup correlation analysis was performed between functional/structural MR indexes and clinical markers. Compared with HC, pre‐KT ESRD patients showed an altered topological organization in both functional and structural networks. Compared with pre‐KT, increased node degree and node efficiency were observed for both functional and structural networks at 1 month after KT (all p <.05), which were further increased at 6 months after KT (p <.05). Both functional and structural networks did not recover completely at 6 months after KT (all p <.05). The patients showed an increased functional–structural connectivity coupling at 1 month after KT compared with HC (p =.041). A trend of progressive recovery of functional and structural connectivity networks was observed in ERSD patients after KT, which did not recover to the normal levels even in 6 months after KT. The study results underlie cognitive function recovery in ESRD patients following KT in the neuropathophysiological perspective. [ABSTRACT FROM AUTHOR]
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- 2020
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18. Loss of Smell and Taste Among Healthcare Personnel Screened for Coronavirus 2019.
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Kempker, Russell R, Kempker, Jordan A, Peters, Marcia, Rebolledo, Paulina A, Carroll, Kelley, Toomer, Linda, Wang, Yun F (Wayne), Ray, Susan M, and Hunter, Mary
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COVID-19 ,AGEUSIA ,SICK people ,MEDICAL personnel ,MEDICAL screening ,SMELL disorders ,SYMPTOMS ,DESCRIPTIVE statistics - Abstract
Among 283 symptomatic healthcare personnel (HCP) tested for SARS-CoV-2, 51 (18%) were positive. Among those 51 HCP, self reported loss of smell and taste were present in 51% and 52.9%, respectively, with either present in 60.8%. These symptoms had high specificity (93% each, 96% for either) for a positive SARS-CoV-2 test. [ABSTRACT FROM AUTHOR]
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- 2021
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19. Treatment Complexities Among Patients with Tuberculosis in a High HIV Prevalence Cohort in the United States.
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Bizune, Destani J., Kempker, Russell R., Kagei, Michelle, Yamin, Aliya, Mohamed, Omar, Holland, David P., Oladele, Alawode, Wang, Yun F., Rebolledo, Paulina A., Blumberg, Henry M., Ray, Susan M., and Schechter, Marcos C.
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- 2018
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20. Application of MALDI-TOF MS Systems in the Rapid Identification of Campylobacter spp. of Public Health Importance.
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YING-HSIN HSIEH, WANG, YUN F., MOURA, HERCULES, MIRANDA, NANCY, SIMPSON, STEVEN, GOWRISHANKAR, RAMNATH, BARR, JOHN, KERDAHI, KHALIL, and SULAIMAN, IRSHAD M.
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CAMPYLOBACTER infections , *PUBLIC health , *RIBOSOMAL RNA , *BACTERIAL DNA , *MICROORGANISMS - Abstract
Campylobacteriosis is an infectious gastrointestinal disease caused by Campylobacter spp. In most cases, it is either underdiagnosed or underreported due to poor diagnostics and limited databases. Several DNA-based molecular diagnostic techniques, including 16S ribosomal RNA (rRNA) sequence typing, have been widely used in the species identification of Campylobacter. Nevertheless, these assays are time-consuming and require a high quality of bacterial DNA. Matrixassisted laser desorption ionization (MALDI) timeof- flight (TOF) MS is an emerging diagnostic technology that can provide the rapid identification of microorganisms by using their intact cells without extraction or purification. In this study, we analyzed 24 American Type Culture Collection reference isolates of 16 Campylobacter spp. and five unknown clinical bacterial isolates for rapid identification utilizing two commercially available MADI-TOF MS platforms, namely the bioMérieux VITEK® MS and Bruker Biotyper systems. In addition, 16S rRNA sequencing was performed to confirm the species-level identification of the unknown clinical isolates. Both MALDI-TOF MS systems identified the isolates of C. jejuni, C. coli, C. lari, and C. fetus. The results of this study suggest that the MALDI-TOF MS technique can be used in the identification of Campylobacter spp. of public health importance. [ABSTRACT FROM AUTHOR]
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- 2018
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21. Diagnosis of Tuberculosis by Using a Nucleic Acid Amplification Test in an Urban Population with High HIV Prevalence in the United States.
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Kobayashi, Miwako, Ray, Susan M., Hanfelt, John, and Wang, Yun F.
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NUCLEIC acid amplification techniques ,MYCOBACTERIUM tuberculosis ,TUBERCULOSIS diagnosis ,HIV infections ,ACID-fastness (Bacteria) ,DIAGNOSIS - Abstract
Background: Use of nucleic acid amplification tests (NAAT) for the diagnosis of Mycobacterium tuberculosis (TB) has been recommended on respiratory specimens submitted for acid-fast bacilli (AFB) testing. It also helps distinguish between TB and non-tuberculous mycobacteria (NTM) species in a setting where NTM rates are relatively high. The purposes of this study are to describe the trend and characteristics of all AFB smear-positive respiratory samples that underwent amplified Mycobacterium tuberculosis direct (MTD) testing, a type of NAAT, and to evaluate the clinical utility and necessity of the test for diagnosis of TB in a population with high-HIV prevalence. Methods: Prospective diagnostic testing and retrospective data analyses were conducted on all AFB smear-positive respiratory samples that underwent MTD testing from 2001 to 2011 at Grady Memorial Hospital (GMH), Atlanta, USA. The test performance was compared to culture. Results: A total of 2,240 AFB smear-positive specimens from 1,412 patients were tested and analyzed in the study. The proportion of specimens that were culture-positive for TB was 28.5%. Sensitivity, specificity, positive predictive value, and negative predictive value of the MTD were 99.0%, 98.0%, 95.3% and 99.6%, respectively. A downward trend was observed in the yearly numbers as well as the proportions of MTD-positive specimens during the study period (p<0.01). There were 2,027 (90.5%) specimens from patients with known HIV status, of which 70.6% was HIV positive and the majority of them (81.8%) had CD4 counts of less than 200 cells/µL. HIV-positives were more likely to have NTM compared to HIV negatives (67.7% vs. 35.4%, p<0.01). Conclusion: Despite the decrease in the incidence of TB, NAAT continues to be an accurate and important diagnostic test in a population with high HIV prevalence, and it differentiates TB and NTM organisms. [ABSTRACT FROM AUTHOR]
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- 2014
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22. Cost Analysis of a Nucleic Acid Amplification Test in the Diagnosis of Pulmonary Tuberculosis at an Urban Hospital with a High Prevalence of TB/HIV.
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Adelman, Max W., Kurbatova, Ekaterina, Wang, Yun F., Leonard, Michael K., White, Nancy, McFarland, Deborah A., and Blumberg, Henry M.
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COST analysis ,NUCLEIC acid amplification techniques ,TUBERCULOSIS diagnosis ,URBAN hospitals ,DISEASE prevalence - Abstract
Introduction: The Centers for Disease Control and Prevention has recommended using a nucleic acid amplification test (NAAT) for diagnosing pulmonary tuberculosis (TB) but there is a lack of data on NAAT cost-effectiveness. Methods: We conducted a prospective cohort study that included all patients with an AFB smear-positive respiratory specimen at Grady Memorial Hospital in Atlanta, GA, USA between January 2002 and June 2008. We determined the sensitivity, specificity, and positive and negative predictive value of a commercially available and FDA-approved NAAT (amplified MTD, Gen-Probe) compared to the gold standard of culture. A cost analysis was performed and included costs related to laboratory tests, hospital charges, anti-TB medications, and contact investigations. Average cost per patient was calculated under two conditions: (1) using a NAAT on all AFB smear-postive respiratory specimens and (2) not using a NAAT. One-way sensitivity analyses were conducted to determine sensitivity of cost difference to reasonable ranges of model inputs. Results: During a 6 1/2 year study period, there were 1,009 patients with an AFB smear-positive respiratory specimen at our public urban hospital. We found the NAAT to be highly sensitive (99.6%) and specific (99.1%) on AFB smear-positive specimens compared to culture. Overall, the positive predictive value (PPV) of an AFB smear-positive respiratory specimen for culture-confirmed TB was 27%. The PPV of an AFB smear-positive respiratory specimen for culture-confirmed TB was significantly higher for HIV-uninfected persons compared to those who were HIV-seropositive (152/271 [56%] vs. 85/445 [19%]; RR = 2.94, 95% CI 2.36–3.65, p<0.001). The cost savings of using the NAAT was $2,003 per AFB smear-positive case. Conclusions: Routine use of the NAAT on AFB smear-positive respiratory specimens was highly cost-saving in our setting at a U.S. urban public hospital with a high prevalence of TB and HIV because of the low PPV of an AFB smear for culture-confirmed TB. [ABSTRACT FROM AUTHOR]
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- 2014
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23. Incidence of invasive Haemophilus influenzae infections in children with sickle cell disease.
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Yee, Marianne E., Bakshi, Nitya, Graciaa, Sara H., Lane, Peter A., Jerris, Robert C., Wang, Yun F., and Yildirim, Inci
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- 2019
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24. Challenges Across the HIV Care Continuum for Patients With HIV/TB Co-infection in Atlanta, GA.
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Schechter, Marcos C, Bizune, Destani, Kagei, Michelle, Holland, David P, Rio, Carlos del, Yamin, Aliya, Mohamed, Omar, Oladele, Alawode, Wang, Yun F, and Rebolledo, Paulina A
- Abstract
Background Antiretroviral therapy (ART) for persons with HIV infection prevents tuberculosis (TB) disease. Additionally, sequential ART after initiation of TB treatment improves outcomes. We examined ART use, retention in care, and viral suppression (VS) before, during, and 3 years following TB treatment for an inner-city cohort in the United States. Methods Retrospective cohort study among persons treated for culture-confirmed TB between 2008 and 2015 at an inner-city hospital. Results Among 274 persons with culture-confirmed TB, 96 (35%) had HIV co-infection, including 23 (24%) new HIV diagnoses and 73 (76%) previous diagnoses. Among those with known HIV prior to TB, the median time of known HIV was 6 years, and only 10 (14%) were on ART at the time of TB diagnosis. The median CD4 at TB diagnosis was 87 cells/uL. Seventy-four (81%) patients received ART during treatment for TB, and 47 (52%) has VS at the end of TB treatment. Only 32% of patients had continuous VS 3 years after completing TB treatment. There were 3 TB recurrences and 3 deaths post–TB treatment; none of these patients had retention or VS after TB treatment. Conclusions Among persons with active TB co-infected with HIV, we found that the majority had known HIV and were not on ART prior to TB diagnosis, and retention in care and VS post–TB treatment were very low. Strengthening the HIV care continuum is needed to improve HIV outcomes and further reduce rates of active TB/HIV co-infection in our and similar settings. [ABSTRACT FROM AUTHOR]
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- 2018
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25. The impact of implementation of rapid blood culture identification panels on antimicrobial optimization: a retrospective cohort study.
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Martin T, Wilber E, Advani S, Torrisi J, Patel M, Rebolledo PA, Wang YF, and Kandiah S
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Objective: Determine the impact of limited implementation of a rapid blood culture identification (BCID) panel., Design: Retrospective cohort study., Methods: From February to April 2022, positive blood cultures identified via e-Plex BCID (Roche, Carlsbad, CA) were compared to those identified using standard microbial identification techniques. The primary outcomes assessed were time to optimal therapy, time to de-escalation of anti-MRSA (methicillin-resistant Staphylococcus aureus) agents, and time to de-escalation of anti-pseudomonal agents. Additional analysis investigated the impact of the availability of antimicrobial stewardship program support. This study was conducted at Grady Health System, a large metropolitan safety-net hospital in the southeastern United States., Results: A total of 253 blood cultures were included in this study (153 BCID and 100 standard). Blood culture identification use was associated with a reduction in median time to optimal antimicrobial therapy (43.4 vs 72.1 h, P < .001) and median time to de-escalation of anti-MRSA agents (27.7 vs 46.7 h, P = .006), and a trend towards reduction of median time to de-escalation of anti-pseudomonal agents (38.8 vs 54.8 h, P = .07). These reductions persisted when controlling for patient age, sex, intensive care unit status, Charlson Comorbidity Index, and antimicrobial stewardship program availability., Conclusions: Despite restricted use and lack of 24/7 antimicrobial stewardship program availability, BCID panel utilization was associated with earlier initiation of optimal therapy and pathogen identification with subsequent de-escalation of broad-spectrum antimicrobials, as compared to standard antimicrobial techniques. This suggests the potential for benefit from adopting novel diagnostic technologies outside of idealized fully-resourced settings., Competing Interests: All authors report no conflicts of interest relevant to this article., (© The Author(s) 2024.)
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- 2024
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26. Outbreak of severe acute respiratory coronavirus virus 2 (SARS-CoV-2) in hospitalized hemodialysis patients: An epidemiologic and genomic investigation.
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Marvil CE, Babiker A, Preston A, Webster AS, Guarner J, Love K, Ghonim E, Rebolledo PA, Wang YF, Arthur RA, Johnston HR, Waggoner JJ, Piantadosi A, and Jacob JT
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- Humans, Disease Outbreaks, Renal Dialysis adverse effects, Genomics, SARS-CoV-2, COVID-19 epidemiology
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We performed an epidemiological investigation and genome sequencing of severe acute respiratory coronavirus virus 2 (SARS-CoV-2) to define the source and scope of an outbreak in a cluster of hospitalized patients. Lack of appropriate respiratory hygiene led to SARS-CoV-2 transmission to patients and healthcare workers during a single hemodialysis session, highlighting the importance of infection prevention precautions.
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- 2023
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27. Risk-Factors for Exposure Associated With SARS-CoV-2 Detection After Recent Known or Potential COVID-19 Exposures Among Patients Seeking Medical Care at a Large Urban, Public Hospital in Fulton County, Georgia - A Cross-Sectional Investigation.
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Smith-Jeffcoat SE, Sleweon S, Koh M, Khalil GM, Schechter MC, Rebolledo PA, Kasinathan V, Hoffman A, Rossetti R, Shragai T, O'Laughlin K, Espinosa CC, Bankamp B, Bowen MD, Paulick A, Gargis AS, Folster JM, da Silva J, Biedron C, Stewart RJ, Wang YF, Kirking HL, and Tate JE
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- Adult, Aged, Cross-Sectional Studies, Female, Georgia epidemiology, Hospitals, Public, Humans, Male, Medicare, Risk Factors, SARS-CoV-2, United States, COVID-19 diagnosis, COVID-19 epidemiology
- Abstract
We aimed to describe frequency of COVID-19 exposure risk factors among patients presenting for medical care at an urban, public hospital serving mostly uninsured/Medicare/Medicaid clients and risk factors associated with SARS-CoV-2 infection. Consenting, adult patients seeking care at a public hospital from August to November 2020 were enrolled in this cross-sectional investigation. Saliva, anterior nasal and nasopharyngeal swabs were collected and tested for SARS-CoV-2 using RT-PCR. Participant demographics, close contact, and activities ≤14 days prior to enrollment were collected through interview. Logistic regression was used to identify risk factors associated with testing positive for SARS-CoV-2. Among 1,078 participants, 51.8% were male, 57.0% were aged ≥50 years, 81.3% were non-Hispanic Black, and 7.6% had positive SARS-CoV-2 tests. Only 2.7% reported COVID-19 close contact ≤14 days before enrollment; this group had 6.79 adjusted odds of testing positive (95%CI = 2.78-16.62) than those without a reported exposure. Among participants who did not report COVID-19 close contact, working in proximity to ≥10 people (adjusted OR = 2.17; 95%CI = 1.03-4.55), choir practice (adjusted OR = 11.85; 95%CI = 1.44-97.91), traveling on a plane (adjusted OR = 5.78; 95%CI = 1.70-19.68), and not participating in an essential indoor activity (i.e., grocery shopping, public transit use, or visiting a healthcare facility; adjusted OR = 2.15; 95%CI = 1.07-4.30) were associated with increased odds of testing positive. Among this population of mostly Black, non-Hispanic participants seeking care at a public hospital, we found several activities associated with testing positive for SARS-CoV-2 infection in addition to close contact with a case. Understanding high-risk activities for SARS-CoV-2 infection among different communities is important for issuing awareness and prevention strategies., Competing Interests: YW, PR, VK, AH, and MS received funding for this study from the CDC Foundation. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Smith-Jeffcoat, Sleweon, Koh, Khalil, Schechter, Rebolledo, Kasinathan, Hoffman, Rossetti, Shragai, O'Laughlin, Espinosa, Bankamp, Bowen, Paulick, Gargis, Folster, da Silva, Biedron, Stewart, Wang, Kirking, Tate and CDC COVID-19 Emergency Response GA-10 Field.)
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- 2022
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28. The need for new test verification and regulatory support for innovative diagnostics.
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Roback JD, Tyburski EA, Alter D, Asakrah S, Chahroudi A, Esper A, Farmer S, Figueroa J, K Frediani J, D Gonzalez M, S Gottfried D, Guarner J, A Gupta N, S Heilman S, E Hill C, Jerris R, R Kempker R, Ingersoll J, Levy JM, Mavigner M, S Moreno C, R Morris C, J Nehl E, S Neish A, Peker D, Saakadze N, Rebolledo PA, A Rostad C, Schoof N, Suessmith A, Sullivan J, Wang YFW, Wood A, Vos MB, Brand O, Martin GS, and Lam WA
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- COVID-19 virology, Humans, SARS-CoV-2 isolation & purification, United States, COVID-19 diagnosis, COVID-19 Testing standards, National Institutes of Health (U.S.) legislation & jurisprudence, United States Food and Drug Administration legislation & jurisprudence
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- 2021
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29. The RADx Tech Test Verification Core and the ACME POCT in the Evaluation of COVID-19 Testing Devices: A Model for Progress and Change.
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Nehl E, Heilman S, Ku D, Gottfried D, Farmer S, Mannino R, Tyburski E, Sullivan J, Suessmith A, Bassit L, Figueroa J, Wood A, Leong T, Rao A, Rogers B, Jerris R, Park S, Gonzalez M, Frediani J, Morris C, Levy J, Schoof N, Mavigner M, Roback J, Herzegh K, Saakadze N, Ingersoll J, Cheedarla N, Neish A, Hanberry B, Porter C, Esper A, Kempker R, Rebolledo P, McGuinness P, Balagadde F, Gore R, Koren A, Pollock N, Rogers E, Simin K, Hafer N, Picard MA, Ghezzi C, McManus D, Buchholz B, Rostad C, Claveria V, Ramachandra T, Wang YF, Washington C, Stone C, Griffiths M, Schinazi R, Chahroudi A, Vos M, Brand O, Martin G, and Lam W
- Abstract
Faced with the COVID-19 pandemic, the US system for developing and testing technologies was challenged in unparalleled ways. This article describes the multi-institutional, transdisciplinary team of the "RADx
SM Tech Test Verification Core" and its role in expediting evaluations of COVID-19 testing devices. Expertise related to aspects of diagnostic testing was coordinated to evaluate testing devices with the goal of significantly expanding the ability to mass screen Americans to preserve lives and facilitate the safe return to work and school. Focal points included: laboratory and clinical device evaluation of the limit of viral detection, sensitivity, and specificity of devices in controlled and community settings; regulatory expertise to provide focused attention to barriers to device approval and distribution; usability testing from the perspective of patients and those using the tests to identify and overcome device limitations, and engineering assessment to evaluate robustness of design including human factors, manufacturability, and scalability., (This work is licensed under a Creative Commons Attribution 4.0 License. For more information, see https://creativecommons.org/licenses/by/4.0/.)- Published
- 2021
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30. Evaluation of a Cryptococcal Antigen Lateral Flow Assay and Cryptococcal Antigen Positivity at a Large Public Hospital in Atlanta, Georgia.
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Harrington KRV, Wang YF, Rebolledo PA, Liu Z, Yang Q, and Kempker RR
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Background: Cryptococcus neoformans is a major cause of morbidity and mortality among human immunodeficiency virus (HIV)-infected persons worldwide, and there are scarce recent data on cryptococcal antigen (CrAg) positivity in the United States We sought to determine the frequency of cryptococcal disease and compare the performance of a CrAg lateral flow assay (LFA) versus latex agglutination (LA) test., Methods: All patients from Grady Health System in Atlanta who had a serum or cerebrospinal fluid (CSF) sample sent for CrAg testing as part of clinical care from November 2017 to July 2018 were included. Percentage positivity and test agreement were calculated., Results: Among 467 patients, 557 diagnostic tests were performed; 413 on serum and 144 on CSF. The mean age was 44 years, and most were male (69%) and had HIV (79%). Twenty-four (6.4%, 95% confidence interval [CI] = 4.1-9.4) patients were serum CrAg positive, and 8 (5.8%, 95% CI = 2.6-11.2) individuals tested positive for CSF CrAg. Although overall agreement between the LA and LFA was substantial to high for CSF (κ = 0.71, 95% CI = 0.51-0.91) and serum (κ = 0.93, 95% CI = 0.86-1.00), respectively, there were important discrepancies. Five patients had false-positive CSF LA tests that affected clinical care, and 4 patients had discordant serum tests., Conclusions: We found a moderately high proportion of cryptococcal disease and important discrepancies between the LA test and LFA. Clinical implications of these findings include accurate detection of serum CrAg and averting unnecessary treatment of meningitis with costly medications associated with high rates of adverse events., (© The Author(s) 2021. Published by Oxford University Press on behalf of Infectious Diseases Society of America.)
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- 2021
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31. Covid-19 will not "magically disappear": Why access to widespread testing is paramount.
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George PE, Stokes CL, Bassit LC, Chahroudi A, Figueroa J, Griffiths MA, Heilman S, Ku DN, Nehl EJ, Leong T, Levy JM, Kempker R, Mannino RG, Mavigner M, Park SI, Rao A, Rebolledo PA, Roback JD, Rogers BB, Schinazi RF, Sullivan J, Tyburski EA, Vos MB, Waggoner JJ, Wang YF, Madsen J, Wechsler DS, Joiner CH, Martin GS, and Lam WA
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- Antigens, Viral analysis, Antigens, Viral immunology, COVID-19 epidemiology, COVID-19 Nucleic Acid Testing, Coronavirus Nucleocapsid Proteins analysis, Coronavirus Nucleocapsid Proteins immunology, Cost-Benefit Analysis, Evaluation Studies as Topic, Financing, Government, Humans, Inventions, National Institutes of Health (U.S.), Point-of-Care Testing, Public-Private Sector Partnerships organization & administration, RNA, Viral analysis, Reagent Kits, Diagnostic supply & distribution, SARS-CoV-2 immunology, Sensitivity and Specificity, Spike Glycoprotein, Coronavirus analysis, Spike Glycoprotein, Coronavirus immunology, United States epidemiology, COVID-19 diagnosis, COVID-19 Testing economics, COVID-19 Testing methods, COVID-19 Testing statistics & numerical data, Health Services Accessibility, Pandemics, SARS-CoV-2 isolation & purification
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- 2021
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32. Routine HIV Test Results in 6 US Clinical Laboratories Using the Recommended Laboratory HIV Testing Algorithm With Geenius HIV 1/2 Supplemental Assay.
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Wesolowski LG, Chavez PR, Cárdenas AM, Katayev A, Slev P, Valsamakis A, Wang YF, Yao JD, Dougherty C, Gillim-Ross L, Harmon C, and Delaney KP
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- Algorithms, HIV Infections virology, HIV Testing, HIV-1 isolation & purification, HIV-2 isolation & purification, Humans, Immunoassay methods, Predictive Value of Tests, Sensitivity and Specificity, Serologic Tests methods, HIV Antibodies blood, HIV Infections blood, HIV Infections diagnosis, HIV-1 immunology, HIV-2 immunology, Laboratories standards
- Abstract
Background: Geenius HIV 1/2 Supplemental Assay (Geenius; Bio-Rad Laboratories) is the only Food and Drug Administration-approved HIV-1/HIV-2 antibody differentiation test for the second step in the HIV laboratory testing algorithm. We characterized the occurrence of true HIV-1 and HIV-2 infections as well as false results in 6 US clinical laboratories using Geenius., Methods: We examined routine HIV testing outcome data from the time the laboratories began using the algorithm with Geenius until September 30, 2017. We calculated the positive predictive value for Geenius HIV-1 and HIV-2 reactivity separately., Results: Of 5,046,684 specimens tested, 41,791 had reactive antigen/antibody test results. Most specimens with reactive antigen/antibody results were HIV-1 antibody-positive established infections (n = 32,421), 1,865 of which also had indeterminate HIV-2 bands present. Ninety-three specimens were HIV-2 antibody positive or untypable for HIV-1/HIV-2 antibody. Acute HIV-1 infections were found in 528 specimens; 881 specimens lacked the nucleic acid test to determine the possibility of acute HIV-1 infection. False-positive antigen/antibody test results were present in 7505 specimens. Few specimens (n = 363) had false-positive antigen/antibody results with indeterminate Geenius and negative HIV-1 nucleic acid test results. The positive predictive values of Geenius reactivity were 99.4% for HIV-1 and 4.3% for HIV-2., Conclusions: Routine testing using the laboratory testing algorithm with Geenius resulted in most specimens resolving as HIV negative or HIV-1 positive. The occurrence of indeterminate HIV-2 bands with a Geenius final assay interpretation of HIV-1 positive was more common than true HIV-2 infections. Reporting indeterminate HIV-2 results in this situation may cause confusion with interpreting HIV infection status.
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- 2020
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33. Application of MALDI-TOF MS Systems in the Rapid Identification of Campylobacter spp. of Public Health Importance.
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Hsieh YH, Wang YF, Moura H, Miranda N, Simpson S, Gowrishankar R, Barr J, Kerdahi K, and Sulaiman IM
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- Animals, Campylobacter genetics, Campylobacter Infections diagnosis, Cats, Chickens, Humans, Lizards, Polymerase Chain Reaction, RNA, Bacterial genetics, RNA, Ribosomal, 16S genetics, Sheep, Swine, Bacterial Typing Techniques methods, Campylobacter isolation & purification, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods
- Abstract
Campylobacteriosis is an infectious gastrointestinal disease caused by Campylobacter spp. In most cases, it is either underdiagnosed or underreported due to poor diagnostics and limited databases. Several DNA-based molecular diagnostic techniques, including 16S ribosomal RNA (rRNA) sequence typing, have been widely used in the species identification of Campylobacter. Nevertheless, these assays are time-consuming and require a high quality of bacterial DNA. Matrix-assisted laser desorption ionization (MALDI) time-of-flight (TOF) MS is an emerging diagnostic technology that can provide the rapid identification of microorganisms by using their intact cells without extraction or purification. In this study, we analyzed 24 American Type Culture Collection reference isolates of 16 Campylobacter spp. and five unknown clinical bacterial isolates for rapid identification utilizing two commercially available MADI-TOF MS platforms, namely the bioMérieux VITEK® MS and Bruker Biotyper systems. In addition, 16S rRNA sequencing was performed to confirm the species-level identification of the unknown clinical isolates. Both MALDI-TOF MS systems identified the isolates of C. jejuni, C. coli, C. lari, and C. fetus. The results of this study suggest that the MALDI-TOF MS technique can be used in the identification of Campylobacter spp. of public health importance.
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- 2018
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34. Retrospective Study of Cryptococcal Meningitis With Elevated Minimum Inhibitory Concentration to Fluconazole in Immunocompromised Patients.
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Nasri H, Kabbani S, Bou Alwan M, Wang YF, Rebolledo PA, Kraft CS, Nguyen ML, Anderson AM, and Rouphael N
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Background. Mortality for cryptococcal meningitis remains significant, in spite of available treatment. Resistance to first-line maintenance therapy, particularly fluconazole, has been reported. Methods. A retrospective chart review was performed on immunocompromised patients with cryptococcal meningitis, who had susceptibility testing performed between January 2001 and December 2011, at 3 hospitals in Atlanta, Georgia. Results. A total of 35 immunocompromised patients with cryptococcal meningitis were identified, 13 (37.1%) of whom had an elevated minimum inhibitory concentration (MIC) to fluconazole (MIC ≥16 µg/mL). Eighty percent of patients were males with African American predominance, the median age was 37 years, and 80% of the patients were human immunodeficiency virus (HIV) positive. Subsequent recurrence of cryptococcal meningitis was more likely in HIV patients compared with solid organ transplant patients (P = .0366). Overall, there was a statistically significant increase in an elevated MIC to fluconazole in patients who had a history of prior azole use (odds ratio, 10.12; 95% confidence interval, 2.04-50.16). Patients with an elevated MIC to fluconazole and those with a high cerebrospinal fluid cryptococcal antigen load (≥1:512) were more likely to have central nervous system complications (P = .0358 and P = .023, respectively). Although no association was observed between an elevated MIC to fluconazole and mortality, those who received voriconazole or high-dose fluconazole (≥800 mg) for maintenance therapy were more likely to survive (P = .0288). Conclusions. Additional studies are required to further investigate the morbidity and mortality associated with an elevated MIC to fluconazole in cryptococcal meningitis, to determine when it is appropriate to perform susceptibility testing, and to evaluate its cost effectiveness.
- Published
- 2016
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