Search

In the Suidae family, warthogs show significant survival adaptability and trait specificity. This study offers a comparative genomic analysis between the warthog and other Suidae species, including the Luchuan pig, Duroc pig, and Red River hog. By integrating the four genomes with sequences from the other four species, we identified 8868 single-copy orthologous genes. Based on 8868 orthologous protein sequences, phylogenetic assessments highlighted divergence timelines and unique evolutionary branches within suid species. Warthogs exist on different evolutionary branches compared to DRCs and LCs, with a divergence time preceding that of DRC and LC. Contraction and expansion analyses of warthog gene families have been conducted to elucidate the mechanisms of their evolutionary adaptations. Using GO, KEGG, and MGI databases, warthogs showed a preference for expansion in sensory genes and contraction in metabolic genes, underscoring phenotypic diversity and adaptive evolution direction. Associating genes with the QTLdb-pigSS11 database revealed links between gene families and immunity traits. The overlap of olfactory genes in immune-related QTL regions highlighted their importance in evolutionary adaptations. This work highlights the unique evolutionary strategies and adaptive mechanisms of warthogs, guiding future research into the distinct adaptability and disease resistance in pigs, particularly focusing on traits such as resistance to African Swine Fever Virus. [ABSTRACT FROM AUTHOR]

The transportation sector is under increasing pressure to reduce greenhouse gas emissions by decarbonizing its operations. One prominent solution that has emerged is the adoption of electric vehicles (EVs). As the electric vehicles market experiences rapid growth, the utilization of lithium-ion batteries (LiB) has become the predominant choice for energy storage. However, it is important to note that lithium-ion battery technology is sensitive to factors, like excessive voltage and temperature. Therefore, the development of an accurate battery model and a reliable state of charge (SOC) estimator is crucial to safeguard against the overcharging and over-discharging of the battery. Numerous studies have been conducted to address lithium-ion battery cell modeling and SOC estimations. These studies have explored variations in the number of RC networks within the model and different estimation methods. However, it is worth mentioning that the capacity of a single lithium-ion battery cell is relatively low and cannot be directly employed in electric vehicles. To meet the total capacity and voltage requirements for electric vehicles, multiple cells are typically connected in series or parallel configurations to form a battery pack. Surprisingly, this aspect has often been overlooked in previous research. To tackle this overlooked challenge, our study introduces a comprehensive battery pack model and an advanced Battery Management System (BMS). We then integrate these components into an electric vehicle model. Subsequently, we simulate the integrated EV-BMS model under the conditions of four different urban driving scenarios to replicate real-world driving conditions. The BMS that we have developed includes an Extended Kalman Filter (EKF)-based SOC estimation system, a mechanism for controlling coolant flow, and a passive cell-balancing algorithm. These components work together to ensure the safe and efficient operation of the battery pack within the electric vehicles. [ABSTRACT FROM AUTHOR]

Simple Summary: Ashidan yak is a new breed of hornless yak developed by Chinese scientists, which has an important economic value. However, little is known about the growth of Ashidan yaks. This study analyzed the body weight and body size measurements of 260 female Ashdan yaks and compared the performance of five nonlinear models (Logistic model, Gompertz model, Brody model, von Bertalanffy model and Richards model). Our results showed that the early growth and development of Ashidan yak change with the seasons, and the Richards model performs better among the five models. Understanding animal growth plays an important role in improving animal genetics and breeding. In order to explore the early growth and development law of Ashidan yak, the body weight (BW), wither height (WH), body oblique length (BL) and chest girth (CG) of 260 female Ashidan yaks were measured. These individuals grew under grazing conditions, and growth traits were measured at 6, 12, 18 and 30 months of age. Then the absolute growth and relative growth of Ashidan yak were calculated, and five nonlinear models (Logistic model, Gompertz model, Brody model, von Bertalanffy model and Richards model) were used to fit the growth curve of Ashidan yak. The fitting effect of the model was evaluated according to MSE, AIC and BIC. The results showed that the growth rate of Ashidan yak was the fastest from 12 to 18 months old, and the growth was slow or even stagnant from 6 to 12 months old. The AIC and BIC values of the Richards model were the lowest among the five models, with an AIC value of 4543.98 and a BIC value of 4563.19. The Richards model estimated body weight at 155.642 kg. In summary, the growth rate of female Ashidan yak changes with the seasons, growing faster in warm seasons and slower in cold seasons. Richards model is the best model to describe the growth curve of female Ashidan yak in five nonlinear models. [ABSTRACT FROM AUTHOR]

Simple Summary: Yak is the dominant animal species in China's plateau regions. The development of the yak industry is conducive to protecting the ecosystem of the Qinghai–Tibet Plateau and promoting local economic development. However, the slow growth and development of yak have seriously affected the development of the yak industry. Structural variation (SV) has been widely applied in livestock breeding for growth traits. Therefore, it is of great significance to use SV to improve yak growth traits in yak breeding. Meanwhile, the GHR gene plays an important role in the formation and normal development of bones. This study associated the correlation between the yak GHR SV gene and growth traits and confirmed that GHR-SV can be used as a molecular marker for the early reproduction of yaks. This study provides a theoretical basis for the early growth and development of yaks. The growth hormone receptor (GHR) is a member of the cytokine/hematopoietic factor receptor superfamily, which plays an important role in the growth and development, immunity, and metabolism of animals. This study identified a 246 bp deletion variant in the intronic region of the GHR gene, and three genotypes, including type II, type ID, and type DD, were observed. Genotype analysis of structural variation (SV) was performed on 585 individuals from 14 yak breeds, and it was found that 246 bp deletion was present in each breed. The II genotype was dominant in all yak breeds except for SB yak. The association analysis of gene polymorphisms and growth traits in the ASD yak population showed that the 246 bp SV was significantly associated with body length at 6 months (p < 0.05). GHR messenger RNA (mRNA) was expressed in all the tested tissues, with significantly higher levels in the liver, muscle, and fat than in other organs. The results of transcription activity showed that the luciferase activity of the pGL4.10-DD vector was significantly higher than that of the pGL4.10-II vector (p < 0.05). Additionally, the transcription-factor binding prediction results showed that the SV in the runt-related transcription factor 1 (Runx1) transcription-factor binding site may affect the transcriptional activity of the GHR gene, regulating yak growth and development. This study showed that the novel SV of the GHR gene could be used as a candidate molecular marker for the selection of the early growth trait in ASD yak. [ABSTRACT FROM AUTHOR]

Developing degradable bio-plastics has been considered feasible to lessen marine plastic pollution. However, unanimity is still elusive regarding the actual degradability of bio-plastics such as polylactide (PLA) and poly(hydroxybutyrate) (PHB). Thus, herein, we studied the degradability of fabrics made from PLA/PHB blends in marine seawater. The dry-mass percentage of the PLA/PHB fabrics decreased progressively from 100% to 85~90% after eight weeks of immersion. Two environmental aging parameters (UV irradiation and aerating) were also confirmed to accelerate the abiotic hydrolysis of the incubated fabrics. The variation in the molecular structure of the PLA/PHB polymers after the degradation process was investigated by electrospray ionization mass spectrometry (ESI-MS). However, the hydrolysis degradability of bulky PLA/PHB blends, which were used to produce such PLA/PHB fabrics, was negligible under identical conditions. There was no mass loss in these solid PLA/PHB plastics except for a decrease in their tensile strength. Finally, a deep learning artificial neural network model was proposed to model and predict the nonlinear abiotic hydrolysis behavior of PLA/PHB fabrics. The degradability of PLA/PHB fabrics in marine water under the synergistic destructive effects of seawater, UV, and dissolved oxygen provides a pathway for more sustainable textile fibers and apparel products. [ABSTRACT FROM AUTHOR]

Long-haired individuals in the Tianzhu white yak population are a unique genetic resource, and have important landscape value. Copy number variation (CNV) is an important source of phenotypic variation in mammals. In this study, we used resequencing technology to detect the whole genome of 10 long-haired Tianzhu white yaks (LTWY) and 10 normal-haired Tianzhu white yaks (NTWY), and analyzed the differences of CNV in the genome of LTWYs and NTWYs. A total of 110268 CNVs were identified, 2006 CNVRs were defined, and the distribution map of these CNVRs on chromosomes was constructed. The comparison of LTWYs and NTWYs identified 80 differential CNVR-harbored genes, which were enriched in lipid metabolism, cell migration and other functions. Notably, some differential genes were identified as associated with hair growth and hair-follicle development (e.g., ASTN2, ATM, COL22A1, GK5, SLIT3, PM20D1, and SGCZ). In general, we present the first genome-wide analysis of CNV in LTWYs and NTWYs. Our results can provide new insights into the phenotypic variation of different hair lengths in Tianzhu white yaks. [ABSTRACT FROM AUTHOR]

Infectious microbial diseases are a major public health hazard, calling for more innovative antimicrobials. Herein, polylactic acid (PLA) oligomers have been explored and reported as a bio-safe and eco-friendly functional antimicrobial agent against pathogens, such as viruses (H1N1, H3N2, and SARS-CoV-2), bacteria (E. coli, S. aureus, K. pneumoniae, MRSA), and fungi (C. albicans). The PLA oligomers were prepared by direct catalyst-free condensation polymerization of l-lactic acid monomers and characterized by FT-IR and 1H-NMR. The antiviral results demonstrate that PLA oligomers possess robust (inhibiting rate > 99%) and rapid (<20 min) antiviral activity against two pandemic ssRNA viruses, including influenza A virus (IAV) and coronavirus (CoV). Furthermore, the PLA oligomers exhibit high antibacterial activities against both Gram negative (G−) and Gram positive (G+) bacteria. The PLA oligomers also perform efficiently in killing a large amount of C. albicans as high as 105 cfu/mL down to zero at the concentration of 10 mg/mL. Thus, the broad-spectrum antimicrobial activity endowed the PLA oligomers with a promising biocidal option, except antibiotics in a wide range of applications, such as medical textiles, food preservation, water disinfection, and personal hygiene, in light of their unique biodegradability and biocompatibility. [ABSTRACT FROM AUTHOR]

Application of the organic fertilizers can improve soil properties and agricultural product quality, while the in-depth effect of organic fertilizer needs further exploration. In this study, the apple fruit (Malus pumila Mill.) quality, soil physicochemical characteristics, and microbial community under different fertilizers including control without fertilizer (CK), composted manure (CM), biogas slurry (BS), and chemical fertilizer (CF) were systematically investigated, and each treatment was repeated three times in completely random block plots with equal NPK content of fertilizer applied in each treatment. The CM treated apple fruit were observed with the best vertical diameter (78.72 ± 4.32 mm), transverse diameter (87.51 ± 1.3 mm), and color index (L* = 55.48 ± 5.48, b* = 18.96 ± 1.86). Meanwhile, the CM and BS treated apple fruit had higher flesh firmness than that of CK and CF treatment, implying that the organic fertilization can improve the storability and crispy taste apple fruit. Furthermore, the total sugars, essential amino acid, crude protein, total acids, and soluble solid contents of apple fruit were also significantly improved by using CM and BS fertilizer due to the resulting higher N, P, and organics content in soil. The application of organic fertilizer also dramatically enhanced the bacterial and fungi diversity, which may contribute to better soil respiration. The results obtained in this study reveals the insight effect of organic fertilizer on improvement of fruit quality and soil health and can supply technical assistance to organic cultivation of apple. [ABSTRACT FROM AUTHOR]

Although significant advancement has been made in the study of adipogenesis, knowledge about how chromatin accessibility regulates yak adipogenesis is lacking. We here described genome-wide dynamic chromatin accessibility in preadipocytes and adipocytes by using the assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq), and thus revealed the unique characteristics of open chromatin during yak adipocyte differentiation. The chromatin accessibility of preadipocytes and adipocytes exhibited a similar genomic distribution, displaying a preferential location within the intergenic region, intron, and promoter. The pathway enrichment analysis identified that genes with differential chromatin accessibility were involved in adipogenic metabolism regulation pathways, such as the peroxisome proliferator activated receptor-γ (PPAR) signaling pathway, wingless-type MMTV integration site (Wnt) signaling pathway, and extracellular matrix-receptor (ECM–receptor) interaction. Integration of ATAC-seq and mRNA-seq revealed that genes with a high expression were associated with high levels of chromatin accessibility, especially within 1 kb upstream and downstream of the transcription start site. In addition, we identified a series of transcription factors (TFs) related to adipogenesis and created the TF regulatory network, providing the possible interactions between TFs during yak adipogenesis. This study is crucial for advancing the understanding of transcriptional regulatory mechanisms of adipogenesis and provides valuable information for understanding the adaptation of plateau species to high-altitude environments by maintaining whole body homeostasis through fat metabolism. [ABSTRACT FROM AUTHOR]

Triboelectric nanogenerators (TENGs) have attracted many researchers' attention with their remarkable potential despite the fact that the practical implementation requires further improvement in their electric performance. In this work, a novel graphene phase two-dimension material, graphitic carbon nitride (g-C3N4), was employed for the development of a TENG material with enhanced features. An electrospun nanofibrous PA66 membrane doped with g-C3N4 was fabricated as a multifunctional TENG for harvesting different kinds of mechanical energy and detecting human motions. By utilizing the innovative 2D material in PA66 solution for electrospinning, the as-made TENG showed a two times enhancement in electrical performance as compared to the control device, and also had the advantages of lightweight, softness, high porosity, and rugged interface properties. The assembled TENG with 4 cm2 could light up 40 light-emitting diodes by gentle hand clapping and power electronic watches or calculators with charging capacitors. At a given impact force of 40 N and 3 Hz, the as-made TENG can generate an open-circuit voltage of 80 V, short current of ±3 µA, charge transfer of 50 nC, and a maximum power density of 45 mW/m2 at a load resistance of 500 MΩ. The UV light sensitivity of TENG was also improved via g-C3N4 doping, showing that charge transfer is very sensitive with a two times enhancement with dopant. For the demonstration of applications, the g-C3N4 doped TENG was fabricated into an energy flag to scavenge wind energy and sensor devices for detecting human motions. [ABSTRACT FROM AUTHOR]

Simple Summary: As a domestic animal living in the Qinghai-Tibet Plateau at high altitudes from 2000 to 5000 m, the growth rate of the yak is slow under extremely harsh natural environmental conditions, such as high altitude, low temperatures, and low oxygen. Compared with conventional selection, using molecular markers in breeding to improve yak growth traits is more efficient. Many studies have indicated that CNV mutations can significantly affect the phenotypic traits of livestock and poultry. This study explored the association between the growth traits and CNVs of SOX5 and SOX8 in 326 Ashidan yaks. Our results showed that CNVs and the CNV combination of SOX5 and SOX8 were significantly associated with withers height and chest girth (p < 0.05), suggesting these mutations could be new markers for the selection of yak growth traits. Copy number variation (CNV) is a structural variant with significant impact on genetic diversity. CNV has been widely used in breeding for growth traits, meat production or quality, and coat color. SRY-like box genes (SOXs) are a class of transcription factors that play a regulatory role in cell fate specification and differentiation. SOX5 and SOX8 belong to subgroups D and E of the SOXs, respectively. Previous studies have shown that SOX5 and SOX8 are essential in the development of bones. In this study, we explored the association between the growth traits and CNVs of SOX5 and SOX8 in 326 Ashidan yaks and detected mRNA expression levels in different tissues. Our results illustrated that CNVs of SOX5 and SOX8 were significantly associated with withers height at 18 months of age and chest girth at 30 months of age (p < 0.05). The CNV combination of SOX5 and SOX8 was significantly associated with withers height at 18 months of age (p < 0.01). SOX5 expression in the lung was significantly higher than in the heart, spleen, kidney, and muscle (p < 0.05). SOX8 expression in the lung was significantly higher than in the liver and muscle (p < 0.05). Our results provide evidence that the CNVs of SOX5 and SOX8 genes could be used as new markers for the selection of yak growth traits. [ABSTRACT FROM AUTHOR]

Marine plastic pollution is emerging as a potential hazard to global ecosystems and human health. Micro-fibers derived from synthetic textiles contribute a considerable proportion of plastic debris. Bio-polymers/bio-plastics have been proposed for the application of apparel products, yet their degradability, fate, durability and related environmental parameters are still elusive and need further exploration. Herein, we report the degradation behavior of poly(lactide acid)/poly(hydroxybutyrate) (PLA/PHB) fabrics, made from PLA/PHB multi-filament yarns, in subtropics marine seawater. The degradation experiments were performed under various parallel conditions including static seawater, aerobic seawater in dark box, aerobic seawater under sunlight, static seawater under ultra-violet light and aerobic seawater under ultra-violet light. Continuous mass loss of PLA/PHB fabrics as the immersion time in the seawater increased was confirmed. The hydrolysis rate of PLA/PHB fabrics accelerated in the presence of UV light and dissolved oxygen in the seawater. Moreover, the tensile strength of the PLA/PHB yarns dropped rapidly by 38.54–68.70% in spite of the mass loss percentage being from 9.57% to 14.48% after 2 weeks' immersion. All the PLA/PHB fabrics after two weeks' immersion exhibited similar ATR-IR spectra. Therefore, the degradability of PLA/PHB fabrics, in the marine surface water under the synergistic destructive effect of seawater, UV and dissolved oxygen, provides a pathway for more sustainable textile fibers and apparel products. [ABSTRACT FROM AUTHOR]

Simple Summary: Given the fact that sheep serve as an increased meat product consumption in China, as well as a suitable model for fat deposition, their digestive tract microbiota has drawn growing attention. Our study depicted the gut microbiota community composition and diversity of sheep with varied genotypes but shared geography, with different sampling intestinal sites and probiotics supplementation time. The results indicated the great difference of the gut microbiota in samples from different sheep breeds, various intestinal sites, and different probiotics feeding times. Additionally, all results implied the dominance of the host factor in shaping unique microbiota under a certain environment, the greatest similarity of colonic and fecal microbiota, and the oral probiotic effectiveness for a given period of time for sheep. Three sampling strategies with a 16s rRNA high-throughput sequencing and gene expression assay (by RT-PCR) were designed, to better understand the host and probiotics effect on gut microbiota in sheep. Sampling: (1) colon contents and back-fat tissues from small-tailed Han sheep (SHS), big-tailed Hulun Buir sheep (BHBS), and short-tailed Steppe sheep (SHBS) (n = 12, 14, 12); (2) jejunum, cecum and colon contents, and feces from Tan sheep (TS, n = 6); (3) feces from TS at 4 time points (nonfeeding, 30 and 60 feeding days, and stop feeding 30 days) with probiotics supplementation (n = 7). The results indicated SHS had the highest Firmicutes abundance, the thinnest back-fat, and the lowest expression of C/EBPβ, C/EBPδ, ATGL, CFD, and SREBP1. Some bacteria orders and families could be potential biomarkers for sheep breeds with a distinct distribution of bacterial abundance, implying the host genotype is predominant in shaping unique microbiota under a shared environment. The microbiota diversity and Bifidobacterial populations significantly changed after 60 days of feeding but restored to its initial state, with mostly colonies, after 30 days ceased. The microbiota composition was greatly different between the small and large intestines, but somewhat different between the large intestine and feces; feces may be reliable for studying large intestinal microbiota in ruminants. [ABSTRACT FROM AUTHOR]

Developing degradable bio-plastics has been considered feasible to lessen marine plastic pollution. However, unanimity is still elusive regarding the actual degradability of bio-plastics such as polylactide (PLA) and poly(hydroxybutyrate) (PHB). Thus, herein, we studied the degradability of fabrics made from PLA/PHB blends in marine seawater. The dry-mass percentage of the PLA/PHB fabrics decreased progressively from 100% to 85~90% after eight weeks of immersion. Two environmental aging parameters (UV irradiation and aerating) were also confirmed to accelerate the abiotic hydrolysis of the incubated fabrics. The variation in the molecular structure of the PLA/PHB polymers after the degradation process was investigated by electrospray ionization mass spectrometry (ESI-MS). However, the hydrolysis degradability of bulky PLA/PHB blends, which were used to produce such PLA/PHB fabrics, was negligible under identical conditions. There was no mass loss in these solid PLA/PHB plastics except for a decrease in their tensile strength. Finally, a deep learning artificial neural network model was proposed to model and predict the nonlinear abiotic hydrolysis behavior of PLA/PHB fabrics. The degradability of PLA/PHB fabrics in marine water under the synergistic destructive effects of seawater, UV, and dissolved oxygen provides a pathway for more sustainable textile fibers and apparel products.

Pancreatic cancer is an aggressive malignant solid tumor well-known by early metastasis, local invasion, resistance to standard chemo- and radiotherapy and poor prognosis. Increasing evidence indicates that pancreatic cancer is initiated and propagated by cancer stem cells (CSCs). Here we review the current research results regarding CSCs in pancreatic cancer and discuss the different markers identifying pancreatic CSCs. This review will focus on metastasis, microRNA regulation and anti-CSC therapy in pancreatic cancer.