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Abstract Substantial consumption and widespread contamination of the available freshwater resources necessitate a continuing search for sustainable, cost-effective and energy-efficient technologies for reclaiming this valuable life-sustaining liquid. With these key advantages, capacitive deionization (CDI) has emerged as a promising technology for the facile removal of ions or other charged species from aqueous solutions via capacitive effects or Faradaic interactions, and is currently being actively explored for water treatment with particular applications in water desalination and wastewater remediation. Over the past decade, the CDI research field has progressed enormously with a constant spring-up of various cell architectures assembled with either capacitive electrodes or battery electrodes, specifically including flow-by CDI, membrane CDI, flow-through CDI, inverted CDI, flow-electrode CDI, hybrid CDI, desalination battery and cation intercalation desalination. This article presents a timely and comprehensive review on the recent advances of various CDI cell architectures, particularly the flow-by CDI and membrane CDI with their key research activities subdivided into materials, application, operational mode, cell design, Faradaic reactions and theoretical models. Moreover, we discuss the challenges remaining in the understanding and perfection of various CDI cell architectures and put forward the prospects and directions for CDI future development. Graphical abstract Image 1 Highlights • A comprehensive review on the recent advances of various CDI cell architectures provided. • CDI cells are assembled with either capacitive electrodes or battery electrodes. • CDI technologies are currently being actively explored for water treatment. • Prospects and directions for CDI future development are presented. [ABSTRACT FROM AUTHOR]