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Non-migratory bristlemouth fishes (Cyclothone spp.) are the most abundant vertebrates on Earth and play an important role in the biological carbon pump by remineralizing organic carbon in deep ecosystems. Acoustic data and net sampling are often used in combination to estimate fish and zooplankton biomass, but this procedure may be subject to several sources of error when applied to mesopelagic species. For instance, the allocation of echoes to species has often been biased by not considering Cyclothone spp. due to the use of nets targeting larger fish. Furthermore, the acoustic properties of the target organisms must be well understood to convert acoustic density into numerical density. The characteristics of a fish’s swimbladder are the most relevant features necessary to assess its acoustic properties. This study provides information on the swimbladder properties of six Cyclothone species inhabiting the meso- and bathypelagic layers in the North Atlantic Ocean and Mediterranean Sea, including swimbladder location within the body, fat tissue content, morphology, morphometry (only available for C. braueri and C. pseudopallida), and fish body-mass density (only available for C. braueri, C. pseudopallida, C. pallida, and C. pygmaea). The studied species showed a functional physoclistous swimbladder, with well-developed gas glands and rete mirabile and numerous capillaries in the case of the shallower species C. braueri and C. pseudopallida (mainly distributed from 400 to 600 m depth), and a fat-invested swimbladder in species with deeper vertical distribution (C. livida, C. microdon, C. pallida, and C. pygmaea). The fat content in the swimbladder (C. pallida and C. microdon) increased with depth and latitude, reducing the space in the swimbladder that could contain gas. Changes in swimbladder size and volume during growth were analyzed for shallower species, where swimbladder volume and equivalent radius followed negative allometric growth in relation to body length. Finally, values of body-mass density (ρ) and gas content required for neutral buoyancy (VG) were estimated for C. braueri and C. pygmaea collected between 350 and 550 m (ρ = 1.052–1.072 g·cm−3, VG = 2%–4%; ρ = 1.052–1.062 g·cm−3, VG = 3.6%), and for C. pallida and C. pseudopallida sampled in the 450–700 m layer (ρ = 1.052–1.062 g·cm−3, VG = 2.6–3.1%; ρ = 1.052–1.062 g·cm−3, VG = 2.8%–3.25%). Results in this study highlight the change in scattering behavior of Cyclothone species from gas-bearing organisms (those that contain gas in their swimbladder) in the upper mesopelagic zone to the fluid-like scattering (with fat-filled swimbladders) of the deeper and northern individuals. The data presented in this manuscript are important for parametrizing acoustic backscattering models built to estimate the echo of Cyclothone species, although further work is needed, particularly for individuals with partially invested swimbladders with an irregular fat-free shape.

Mesopelagic fish populations are characterised by high species richness and abundance, and have been identified as important contributors to the active carbon fluxes in the open ocean. We report variability in communities of mesopelagic fish between five zones around the Iberian Peninsula, i.e. Balears and Alboran in the Mediterranean, and Cadiz, Lisboa and Galicia in the Atlantic. Day and night samples were collected from 7 layers of the water column with a midwater trawl fitted with a multisampler. Temperature and salinity regimes were very different on the Mediterranean and Atlantic sides of the peninsula, with much higher values through the entire water column in the Mediterranean, characterized by a strong pycnocline. The highest productivity was observed off Lisboa, where Chlorophyll a concentrations were two orders of magnitude higher than in any other zone. Samples from the western Mediterranean held 22 fish species, while 67 were found in the Atlantic. The lowest diversity and the highest dominance were observed in Balears, and the highest diversity in Cadiz zone. In all zones, but particularly in those in the Mediterranean, mesopelagic populations were dominated by a high number of small fish with low individual biomasses. The species Benthosema glaciale, Cyclothone pygmaea and Ceratoscopelus maderensis were common in the Mediterranean populations, whereas in the Atlantic, Cyclothone microdon/livida, Valenciennellus tripunctulatus, Ceratoscopelus warmingii and Benthosema suborbitale were the most common species. Temperature and salinity (both at surface and in the mesopelagic zone) were the main environmental factors explaining variability in assemblage composition. A persistent (day-night) deep scattering layer was observed using the vessel-based echosounder in all zones, and was comprised primarily of the gonostomatid Cyclothone spp. Night-time echosounder observations of scattering layers near the surface were observed in Balears, Alboran, Cadiz and Lisboa, where night surface net collections indicated that Myctophidae, Stomiidae and Phosichthyidae migration extended to the upper 100 m. Sternoptychids and the gonostomatid Sigmops elongatus seldom reached the upper 100 m in their night vertical migrations. Night stratified hauls of 30 m resolution carried out in the epipelagic zone showed that abundances maxima of migratory fish coincided with the location of the Chlorophyll a maxima.

Different types and systems to discriminate plankton samples at different strata in the water column have been developed in recent decades. For sampling at sufficient depth, opening and closing zooplankton multinets are ideal because there is no contamination of one sample with organisms of the previous one. However, for bigger nets, such as those used to collect micronektonic organism, it is difficult to use multiple net units, and multiple cod ends are preferred because of their simplicity, but with the problem of sample contamination from having a common net passageway. We present here a cod-end Multisampler design, VERDA, that uses a carrousel-like system. Similar to some sediment traps, the system works like a revolver with six or eight compartments whose turning mechanism is triggered when the net arrives to a programmed depth level. This prototype was built with inexpensive and recycled components and electronics similar to Arduino® and Teensy PCB to carry out electronic control. The net we used for testing the equipment was a mid-size midwater trawl of ca. 30 m2 and total length of 58 m that works with a single towing cable and no doors. The overall system is useful for all type of ships, due to the relatively easy deployment operations and because the Multisampler does not need electrical cable or acoustics. In our case, we used a Marport® (Reykjavik Iceland) and Scanmar (Åsgårdstrand, Norway) sensors for real-time depth monitoring and opening distance.

Quantification of the actual amount of carbon export to the mesopelagic layer by both zooplankton and micronekton is at present a gap in the knowledge of the biological pump. These organisms perform diel vertical migrations exporting carbon through respiration, excretion, mortality, and egestion during their residence at depth. The role of zooplankton in active flux is nowadays partially assessed. However, micronekton active flux is scarcely known and only a few studies addressed this downward transport. Even less is known about the capacity of both communities to export carbon in the ocean. Here, we show the results of zooplankton and micronekton active flux across a productivity gradient in the tropical and subtropical Atlantic Ocean. Biomass vertical distribution from the surface up to 800 m depth by day and night was studied during April 2015 in a transect from 9°S to 25°N, covering from the quite oligotrophic zone off Brazil to the meso- and eutrophic areas of the equator, Guinea Dome, and the oceanic upwelling off Northwest Africa. Zooplankton and micronekton migrant biomass was estimated from day and night catches at different layers of the water column using MOCNESS-1 (1 m2 mouth area) and Mesopelagos (35 m2) nets, respectively. Respiratory flux was assessed by measuring the enzymatic activity of the electron transfer system (ETS) of organisms at depth. Results showed a close relationship between migrant biomass and respiratory flux in zooplankton and micronekton as expected. Using a rather conservative 50% of efficiency for the net used to capture micronekton, respiratory flux resulted in similar values for both communities. Gravitational (passive) flux measured using sediment traps increased from the oligotrophic toward the meso- and eutrophic zones. Total active flux (including respiration and estimated mortality, excretion, and gut flux) by zooplankton and micronekton accounted for about 25% of total flux (passive plus active) in oligotrophic zones. Total active flux also increased toward meso- and eutrophic zones, reaching about 80% of total flux and being at least twofold higher than passive flux. These results alert about an important underestimation of the ocean biological pump using only passive flux measurements.

Traditionally the horizontal orientation in a ship (heading) has been obtained from a gyrocompass. This instrument is still used on research vessels but has an estimated error of about 2-3 degrees, inducing a systematic error in the cross-track velocity measured by an Acoustic Doppler Current Profiler (ADCP). The three-dimensional positioning system (GPS 3DF) provides an independent heading measurement with accuracy better than 0.1 degree. The Spanish research vessel BIO Hespérides has been operating with this new system since 1996. For the first time on this vessel, the data from this new instrument are used to estimate gyrocompass error. The methodology we use follows the scheme developed by Griffiths (1994), which compares data from the gyrocompass and the GPS system in order to obtain an interpolated error function. In the present work we apply this methodology on mesoscale surveys performed during the observational phase of the OMEGA project, in the Alboran Sea. The heading-dependent gyrocompass error dominated. Errors in gyrocompass heading of 1.4-3.4 degrees have been found, which give a maximum error in measured cross-track ADCP velocity of 24 cm s-1.