29 results on '"BROWN, ELIZABETH B."'
Search Results
2. Ir56d-dependent fatty acid responses in Drosophila uncovers taste discrimination between different classes of fatty acids
- Author
-
Brown, Elizabeth B, Shah, Kreesha D, Palermo, Justin, Dey, Manali, Dahanukar, Anupama, and Keene, Alex C
- Subjects
Nutrition ,Behavioral and Social Science ,Dental/Oral and Craniofacial Disease ,Neurosciences ,Basic Behavioral and Social Science ,Animals ,CRISPR-Cas Systems ,Drosophila ,Fatty Acids ,Female ,Gene Deletion ,Neurons ,Odorants ,Sensory Receptor Cells ,Taste Perception ,D. melanogaster ,fatty acids ,neuroscience ,sensory plasticity ,taste ,Biochemistry and Cell Biology - Abstract
Chemosensory systems are critical for evaluating the caloric value and potential toxicity of food. While animals can discriminate between thousands of odors, much less is known about the discriminative capabilities of taste systems. Fats and sugars represent calorically potent and attractive food sources that contribute to hedonic feeding. Despite the differences in nutritional value between fats and sugars, the ability of the taste system to discriminate between different rewarding tastants is thought to be limited. In Drosophila, taste neurons expressing the ionotropic receptor 56d (IR56d) are required for reflexive behavioral responses to the medium-chain fatty acid, hexanoic acid. Here, we tested whether flies can discriminate between different classes of fatty acids using an aversive memory assay. Our results indicate that flies are able to discriminate medium-chain fatty acids from both short- and long-chain fatty acids, but not from other medium-chain fatty acids. While IR56d neurons are broadly responsive to short-, medium-, and long-chain fatty acids, genetic deletion of IR56d selectively disrupts response to medium-chain fatty acids. Further, IR56d+ GR64f+ neurons are necessary for proboscis extension response (PER) to medium-chain fatty acids, but both IR56d and GR64f neurons are dispensable for PER to short- and long-chain fatty acids, indicating the involvement of one or more other classes of neurons. Together, these findings reveal that IR56d is selectively required for medium-chain fatty acid taste, and discrimination of fatty acids occurs through differential receptor activation in shared populations of neurons. Our study uncovers a capacity for the taste system to encode tastant identity within a taste category.
- Published
- 2021
3. Measuring metabolic rate in single flies during sleep and waking states via indirect calorimetry
- Author
-
Brown, Elizabeth B., Klok, Jaco, and Keene, Alex C.
- Published
- 2022
- Full Text
- View/download PDF
4. Aggression Is Induced by Resource Limitation in the Monarch Caterpillar
- Author
-
Collie, Joseph, Granela, Odelvys, Brown, Elizabeth B., and Keene, Alex C.
- Published
- 2020
- Full Text
- View/download PDF
5. Neurofibromin regulates metabolic rate via neuronal mechanisms in Drosophila
- Author
-
Botero, Valentina, Stanhope, Bethany A., Brown, Elizabeth B., Grenci, Eliza C., Boto, Tamara, Park, Scarlet J., King, Lanikea B., Murphy, Keith R., Colodner, Kenneth J., Walker, James A., Keene, Alex C., Ja, William W., and Tomchik, Seth M.
- Published
- 2021
- Full Text
- View/download PDF
6. Pathological chemotherapy response score is prognostic in tubo-ovarian high-grade serous carcinoma: A systematic review and meta-analysis of individual patient data
- Author
-
Aggarwal, Simi, Bronger, Holger, Brown, Elizabeth B., Buck, Martin, Bukhari, Syed A., Coghlan, Edwina, Cope, Nichola, de Almeida, Michelle Samora, De Kroon, Cornelius D., Dean, Andrew, Devlin, Michael-John, Ditzel, Helena M., Drecoll, Enken, Ebata, Takahiro, Fagotti, Anna, Faruqi, Asma, Feeney, Laura, Gupta, Kavita, Harley, Ian, Inzani, Frediano, Jeyarajah, Arjun R., Koay, M.H. Eleanor, Kroep, Judith R., Lee, Jung-Yun, Leung, Yee, Lockley, Michelle, Loft, Alice R., MaGee, Daniel, Manchanda, Ranjit, McKenna, Sarah, Midha, Divya, Millan, David, Millar, Joanne, Miller, Rowan, Mohan, Ganendra R., Mughal, Sohail, Mukhopadhyay, Asima, Nicolau, Sergio Mancini, Nevin, James, Oakley, Abigail S., Quigley, Mary, Rai, Bhavana, Rajwanshi, Arvind, Salfinger, Stuart G., Scambia, Giovanni, Scatchard, Kate, Schmalfeldt, Barbara, Simcock, Bryony, Singh, Priya, Strickland, Kyle C., Suri, Vainta, Syed, Sheeba, Sykes, Peter, Tamura, Kenji, Tan, Adeline, Tan, Jason, Thompson, Emily, Tinker, Anna V., Trevisan, Georgia, Uyeda, Maria Gabriela Baumgarten Kuster, Vaughan, Michelle M., Weichert, Wilko, Williams, Anthony, Williams, Sarah, Yoshida, Hiroshi, Zorzato, Pier Carlo, Cohen, Paul A., Powell, Aime, Böhm, Steffen, Gilks, C. Blake, Stewart, Colin J.R., Meniawy, Tarek M., Bulsara, Max, Avril, Stefanie, Brockbank, Eleanor C., Bosse, Tjalling, de Azevedo Focchi, Gustavo Rubino, Ganesan, Raji, Glasspool, Rosalind M., Howitt, Brooke E., Kim, Hyun-Soo, Le, Nhu D., Mandalia, Trupti, McCluggage, W. Glenn, McNeish, Iain, Srinivasan, Radhika, Tan, Yun Yi, van der Griend, Rachael, Yunokawa, Mayu, Zannoni, Gian F., and Singh, Naveena
- Published
- 2019
- Full Text
- View/download PDF
7. Perturbation of the insomnia WDR90 genome-wide association studies locus pinpoints rs3752495 as a causal variant influencing distal expression of neighboring gene, PIG-Q.
- Author
-
Sonti, Shilpa, Littleton, Sheridan H, Pahl, Matthew C, Zimmerman, Amber J, Chesi, Alessandra, Palermo, Justin, Lasconi, Chiara, Brown, Elizabeth B, Pippin, James A, Wells, Andrew D, Doldur-Balli, Fusun, Pack, Allan I, Gehrman, Phillip R, Keene, Alex C, and Grant, Struan F A
- Published
- 2024
- Full Text
- View/download PDF
8. Pooled study of occupational exposure to aromatic hydrocarbon solvents and risk of multiple myeloma
- Author
-
De Roos, Anneclaire J, Spinelli, John, Brown, Elizabeth B, Atanackovic, Djordje, Baris, Dalsu, Bernstein, Leslie, Bhatti, Parveen, Camp, Nicola J, Chiu, Brian C, Clavel, Jacqueline, Cozen, Wendy, De Sanjosé, Silvia, Dosman, James A, Hofmann, Jonathan N, McLaughlin, John R, Miligi, Lucia, Monnereau, Alain, Orsi, Laurent, Purdue, Mark P, Schinasi, Leah H, Tricot, Guido J, Wang, Sophia S, Zhang, Yawei, Birmann, Brenda M, and Cocco, Pierluigi
- Published
- 2018
9. The Gene CG6767 Affects Olfactory Behavior in Drosophila melanogaster
- Author
-
Brown, Elizabeth B., Rayens, Emily, and Rollmann, Stephanie M.
- Published
- 2019
- Full Text
- View/download PDF
10. Neurofibromin 1 mediates sleep depth in Drosophila.
- Author
-
Brown, Elizabeth B., Zhang, Jiwei, Lloyd, Evan, Lanzon, Elizabeth, Botero, Valentina, Tomchik, Seth, and Keene, Alex C
- Subjects
- *
SLEEP duration , *SLEEP deprivation , *SLEEP physiology , *SLEEP quality , *LONGEVITY , *FRUIT flies , *DROSOPHILA - Abstract
Neural regulation of sleep and metabolic homeostasis are critical in many aspects of human health. Despite extensive epidemiological evidence linking sleep dysregulation with obesity, diabetes, and metabolic syndrome, little is known about the neural and molecular basis for the integration of sleep and metabolic function. The RAS GTPase-activating gene Neurofibromin (Nf1) has been implicated in the regulation of sleep and metabolic rate, raising the possibility that it serves to integrate these processes, but the effects on sleep consolidation and physiology remain poorly understood. A key hallmark of sleep depth in mammals and flies is a reduction in metabolic rate during sleep. Here, we examine multiple measures of sleep quality to determine the effects of Nf1 on sleep-dependent changes in arousal threshold and metabolic rate. Flies lacking Nf1 fail to suppress metabolic rate during sleep, raising the possibility that loss of Nf1 prevents flies from integrating sleep and metabolic state. Sleep of Nf1 mutant flies is fragmented with a reduced arousal threshold in Nf1 mutants, suggesting Nf1 flies fail to enter deep sleep. The effects of Nf1 on sleep can be localized to a subset of neurons expressing the GABAA receptor Rdl. Sleep loss has been associated with changes in gut homeostasis in flies and mammals. Selective knockdown of Nf1 in Rdl-expressing neurons within the nervous system increases gut permeability and reactive oxygen species (ROS) in the gut, raising the possibility that loss of sleep quality contributes to gut dysregulation. Together, these findings suggest Nf1 acts in GABA-sensitive neurons to modulate sleep depth in Drosophila. Author summary: Growing evidence suggests fruit flies, like mammals, possess different forms of sleep including light and deep sleep. Despite major advances in our understanding of t genes regulating sleep duration, little is known about how different forms of sleep are regulated. Neurofibramin 1 is associated with numerous neurological phenotypes including dysregulated sleep and circadian rhythms. Here, we report that flies harboring mutations in Neurofibramin 1 fail to enter deep sleep. This phenotype can be localized to GABA-receptive neurons in the brain and selective loss of Neurofibramin 1 in these neurons is also associated with reduced longevity and gut dysregulation. Together, these findings provide insight into the neural basis of sleep depth in fruit flies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
11. Sleep regulation: The gut sets the threshold.
- Author
-
Brown, Elizabeth B. and Keene, Alex C.
- Subjects
- *
DIETARY proteins , *SLEEP - Abstract
Sleep is regulated by many environmental factors including food availability and exposure to sensory stimuli. A recent study identifies a gut–brain axis that is activated by dietary proteins and inhibits sensory responsiveness, allowing animals to enter and maintain deep sleep. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
12. Sleep Regulates Glial Plasticity and Expression of the Engulfment Receptor Draper Following Neural Injury
- Author
-
Stanhope, Bethany A., Jaggard, James B., Gratton, Melanie, Brown, Elizabeth B., and Keene, Alex C.
- Published
- 2020
- Full Text
- View/download PDF
13. Characterizing the genetic basis of trait evolution in the Mexican cavefish.
- Author
-
Oliva, Camila, Hinz, Nicole K., Robinson, Wayne, Barrett Thompson, Alexys M., Booth, Julianna, Crisostomo, Lina M., Zanineli, Samantha, Tanner, Maureen, Lloyd, Evan, O'Gorman, Morgan, McDole, Brittnee, Paz, Alexandra, Kozol, Rob, Brown, Elizabeth B., Kowalko, Johanna E., Fily, Yaouen, Duboue, Erik R., and Keene, Alex C.
- Subjects
STARTLE reaction ,GENE mapping ,PREDATION ,CAVES ,ASTYANAX ,ALBINISM - Abstract
Evolution in response to a change in ecology often coincides with various morphological, physiological, and behavioral traits. For most organisms little is known about the genetic and functional relationship between evolutionarily derived traits, representing a critical gap in our understanding of adaptation. The Mexican tetra, Astyanax mexicanus, consists of largely independent populations of fish that inhabit at least 30 caves in Northeast Mexico, and a surface fish population, that inhabit the rivers of Mexico and Southern Texas. The recent application of molecular genetic approaches combined with behavioral phenotyping have established A. mexicanus as a model for studying the evolution of complex traits. Cave populations of A. mexicanus are interfertile with surface populations and have evolved numerous traits including eye degeneration, insomnia, albinism, and enhanced mechanosensory function. The interfertility of different populations from the same species provides a unique opportunity to define the genetic relationship between evolved traits and assess the co‐evolution of behavioral and morphological traits with one another. To define the relationships between morphological and behavioral traits, we developed a pipeline to test individual fish for multiple traits. This pipeline confirmed differences in locomotor activity, prey capture, and startle reflex between surface and cavefish populations. To measure the relationship between traits, individual F2 hybrid fish were characterized for locomotor behavior, prey‐capture behavior, startle reflex, and morphological attributes. Analysis revealed an association between body length and slower escape reflex, suggesting a trade‐off between increased size and predator avoidance in cavefish. Overall, there were few associations between individual behavioral traits, or behavioral and morphological traits, suggesting independent genetic changes underlie the evolution of the measured behavioral and morphological traits. Taken together, this approach provides a novel system to identify genetic underpinnings of naturally occurring variation in morphological and behavioral traits. Research highlights: 1)We examined the relationship between evolved morphological traits in the cave‐dwelling, form and the behavioral changes the cave form exhibits.2)We find that shared genetic architecture regulates numerous traits associated with body and size.3)We identified behavioral and morphological traits are largely regulated by independent genetic architecture.4)These experiments provide a framework for future studies that apply genetic mapping to identify genetic architecture regulating complex traits. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
14. Behavioral and Transcriptional Response to Selection for Olfactory Behavior in Drosophila.
- Author
-
Brown, Elizabeth B., Layne, John E., Elchert, Alexandra R., and Rollmann, Stephanie M.
- Subjects
- *
BREEDING , *DROSOPHILA , *DROSOPHILA melanogaster , *OLFACTORY receptors , *SMELL , *GENE expression , *FOOD consumption - Abstract
The detection, discrimination, and behavioral responses to chemical cues in the environment can have marked effects on organismal survival and reproduction, eliciting attractive or aversive behavior. To gain insight into mechanisms mediating this hedonic valence, we applied thirty generations of divergent artificial selection for Drosophila melanogaster olfactory behavior. We independently selected for positive and negative behavioral responses to two ecologically relevant chemical compounds: 2,3-butanedione and cyclohexanone. We also tested the correlated responses to selection by testing behavioral responses to other odorants and life history traits. Measurements of behavioral responses of the selected lines and unselected controls to additional odorants showed that the mechanisms underlying responses to these odorants are, in some cases, differentially affected by selection regime and generalization of the response to other odorants was only detected in the 2,3-butanedione selection lines. Food consumption and lifespan varied with selection regime and, at times, sex. An analysis of gene expression of both selection regimes identified multiple differentially expressed genes. New genes and genes previously identified in mediating olfactory behavior were identified. In particular, we found functional enrichment of several gene ontology terms, including cell-cell adhesion and sulfur compound metabolic process, the latter including genes belonging to the glutathione S-transferase family. These findings highlight a potential role for glutathione S-transferases in the evolution of hedonic valence to ecologically relevant volatile compounds and set the stage for a detailed investigation into mechanisms by which these genes mediate attraction and aversion. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
15. Dietary fatty acids promote sleep through a taste‐independent mechanism.
- Author
-
Pamboro, Estelle L. S., Brown, Elizabeth B., and Keene, Alex C.
- Subjects
- *
FATTY acids , *TASTE , *TASTE perception , *SLEEP , *DROSOPHILA melanogaster , *FRUIT flies - Abstract
Consumption of foods that are high in fat contribute to obesity and metabolism‐related disorders. Dietary lipids are comprised of triglycerides and fatty acids, and the highly palatable taste of dietary fatty acids promotes food consumption, activates reward centers in mammals and underlies hedonic feeding. Despite the central role of dietary fats in the regulation of food intake and the etiology of metabolic diseases, little is known about how fat consumption regulates sleep. The fruit fly, Drosophila melanogaster, provides a powerful model system for the study of sleep and metabolic traits, and flies potently regulate sleep in accordance with food availability. To investigate the effects of dietary fats on sleep regulation, we have supplemented fatty acids into the diet of Drosophila and measured their effects on sleep and activity. We found that flies fed a diet of hexanoic acid, a medium‐chain fatty acid that is a by‐product of yeast fermentation, slept more than flies starved on an agar diet. To assess whether dietary fatty acids regulate sleep through the taste system, we assessed sleep in flies with a mutation in the hexanoic acid receptor Ionotropic receptor 56D, which is required for fatty acid taste perception. We found that these flies also sleep more than agar‐fed flies when fed a hexanoic acid diet, suggesting the sleep promoting effect of hexanoic acid is not dependent on sensory perception. Taken together, these findings provide a platform to investigate the molecular and neural basis for fatty acid‐dependent modulation of sleep. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
16. Drosophila insulin-like peptide 2 mediates dietary regulation of sleep intensity.
- Author
-
Brown, Elizabeth B., Shah, Kreesha D., Faville, Richard, Kottler, Benjamin, and Keene, Alex C.
- Subjects
- *
OREXINS , *DROSOPHILA , *SLEEP deprivation , *SLEEP , *GENETIC regulation , *FRUIT flies , *SOMATOMEDIN C - Abstract
Sleep is a nearly universal behavior that is regulated by diverse environmental stimuli and physiological states. A defining feature of sleep is a homeostatic rebound following deprivation, where animals compensate for lost sleep by increasing sleep duration and/or sleep depth. The fruit fly, Drosophila melanogaster, exhibits robust recovery sleep following deprivation and represents a powerful model to study neural circuits regulating sleep homeostasis. Numerous neuronal populations have been identified in modulating sleep homeostasis as well as depth, raising the possibility that the duration and quality of recovery sleep is dependent on the environmental or physiological processes that induce sleep deprivation. Here, we find that unlike most pharmacological and environmental manipulations commonly used to restrict sleep, starvation potently induces sleep loss without a subsequent rebound in sleep duration or depth. Both starvation and a sucrose-only diet result in increased sleep depth, suggesting that dietary protein is essential for normal sleep depth and homeostasis. Finally, we find that Drosophila insulin like peptide 2 (Dilp2) is acutely required for starvation-induced changes in sleep depth without regulating the duration of sleep. Flies lacking Dilp2 exhibit a compensatory sleep rebound following starvation-induced sleep deprivation, suggesting Dilp2 promotes resiliency to sleep loss. Together, these findings reveal innate resilience to starvation-induced sleep loss and identify distinct mechanisms that underlie starvation-induced changes in sleep duration and depth. Author summary: Sleep is nearly universal throughout the animal kingdom and homeostatic regulation represents a defining feature of sleep, where animals compensate for lost sleep by increasing sleep over subsequent time periods. Despite the robustness of this feature, the neural mechanisms regulating recovery from different types of sleep deprivation are not fully understood. Fruit flies provide a powerful model for investigating the genetic regulation of sleep, and like mammals, display robust recovery sleep following deprivation. Here, we find that unlike most stimuli that suppress sleep, sleep deprivation by starvation does not require a homeostatic rebound. These findings are likely due to flies engaging in deeper sleep during the period of partial sleep deprivation, suggesting a natural resilience to starvation-induced sleep loss. This unique resilience to starvation-induced sleep loss is dependent on Drosophila insulin-like peptide 2, revealing a critical role for insulin signaling in regulating interactions between diet and sleep homeostasis. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
17. Starvation resistance is associated with developmentally specified changes in sleep, feeding and metabolic rate.
- Author
-
Brown, Elizabeth B., Slocumb, Melissa E., Kerbs, Arianna, Keene, Alex C., Szuperak, Milan, Kayser, Matthew S., and Gibbs, Allen G.
- Subjects
- *
FOOD shortages , *STARVATION , *FOOD consumption , *ONTOGENY , *DROSOPHILA melanogaster - Abstract
Food shortage represents a primary challenge to survival, and animals have adapted diverse developmental, physiological and behavioral strategies to survive when food becomes unavailable. Starvation resistance is strongly influenced by ecological and evolutionary history, yet the genetic basis for the evolution of starvation resistance remains poorly understood. The fruit fly Drosophila melanogaster provides a powerful model for leveraging experimental evolution to investigate traits associated with starvation resistance. While control populations only live a few days without food, selection for starvation resistance results in populations that can survive weeks. We have previously shown that selection for starvation resistance results in increased sleep and reduced feeding in adult flies. Here, we investigate the ontogeny of starvation resistance-associated behavioral and metabolic phenotypes in these experimentally selected flies. We found that selection for starvation resistance resulted in delayed development and a reduction in metabolic rate in larvae that persisted into adulthood, suggesting that these traits may allow for the accumulation of energy stores and an increase in body size within these selected populations. In addition, we found that larval sleep was largely unaffected by starvation selection and that feeding increased during the late larval stages, suggesting that experimental evolution for starvation resistance produces developmentally specified changes in behavioral regulation. Together, these findings reveal a critical role for development in the evolution of starvation resistance and indicate that selection can selectively influence behavior during defined developmental time points. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
18. Variation in sleep and metabolic function is associated with latitude and average temperature in <italic>Drosophila melanogaster</italic>.
- Author
-
Brown, Elizabeth B., Torres, Joshua, Bennick, Ryan A., Rozzo, Valerie, Kerbs, Arianna, DiAngelo, Justin R., and Keene, Alex C.
- Subjects
- *
SLEEP , *METABOLISM , *DROSOPHILA melanogaster , *BIOLOGICAL evolution , *PHENOTYPES - Abstract
Abstract: Regulation of sleep and metabolic homeostasis is critical to an animal's survival and under stringent evolutionary pressure. Animals display remarkable diversity in sleep and metabolic phenotypes; however, an understanding of the ecological forces that select for, and maintain, these phenotypic differences remains poorly understood. The fruit fly,
Drosophila melanogaster , is a powerful model for investigating the genetic regulation of sleep and metabolic function, and screening in inbred fly lines has led to the identification of novel genetic regulators of sleep. Nevertheless, little is known about the contributions of naturally occurring genetic differences to sleep, metabolic phenotypes, and their relationship with geographic or environmental gradients. Here, we quantified sleep and metabolic phenotypes in 24D. melanogaster populations collected from diverse geographic localities. These studies reveal remarkable variation in sleep, starvation resistance, and energy stores. We found that increased sleep duration is associated with proximity to the equator and elevated average annual temperature, suggesting that environmental gradients strongly influence natural variation in sleep. Further, we found variation in metabolic regulation of sleep to be associated with free glucose levels, while starvation resistance associates with glycogen and triglyceride stores. Taken together, these findings reveal robust naturally occurring variation in sleep and metabolic traits inD. melanogaster , providing a model to investigate how evolutionary and ecological history modulate these complex traits. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
19. Artificial selection for odor-guided behavior in Drosophila reveals changes in food consumption.
- Author
-
Brown, Elizabeth B., Patterson, Cody, Pancoast, Rayanne, and Rollmann, Stephanie M.
- Subjects
- *
ARTIFICIAL selection of animals , *DROSOPHILA , *CRESOL , *AROMATIC compounds , *RNA sequencing , *GENE expression - Abstract
Background: The olfactory system enables organisms to detect chemical cues in the environment and can signal the availability of food or the presence of a predator. Appropriate behavioral responses to these chemical cues are therefore important for organismal survival and can influence traits such as organismal life span and food consumption. However, understanding the genetic mechanisms underlying odor-guided behavior, correlated responses in other traits and how these constrain or promote their evolution, remain an important challenge. Here, we performed artificial selection for attractive and aversive behavioral responses to four chemical compounds, two aromatics (4-ethylguaiacol and 4-methylphenol) and two esters (methyl hexanoate and ethyl acetate), for thirty generations. Results: Artificial selection for odor-guided behavior revealed symmetrical responses to selection for each of the four chemical compounds. We then investigated whether selection for odor-guided behavior resulted in correlated responses in life history traits and/or food consumption. We found changes in food consumption upon selection for behavioral responses to aromatics. In many cases, lines selected for increased attraction to aromatics showed an increase in food consumption. We then performed RNA sequencing of lines selected for responses to 4- ethylguaiacol to identify candidate genes associated with odor-guided behavior and its impact on food consumption. We identified 91 genes that were differentially expressed among lines, many of which were associated with metabolic processes. RNAi-mediated knockdown of select candidate genes further supports their role in odor-guided behavior and/or food consumption. Conclusions: This study identifies novel genes underlying variation in odor-guided behavior and further elucidates the genetic mechanisms underlying the interrelationship between olfaction and feeding. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
20. A subset of sweet-sensing neurons identified by IR56d are necessary and sufficient for fatty acid taste.
- Author
-
Tauber, John M., Brown, Elizabeth B., Li, Yuanyuan, Yurgel, Maria E., Masek, Pavel, and Keene, Alex C.
- Subjects
- *
NEURONS , *FATTY acids , *GENE silencing , *TASTE perception , *GENE expression - Abstract
Fat represents a calorically potent food source that yields approximately twice the amount of energy as carbohydrates or proteins per unit of mass. The highly palatable taste of free fatty acids (FAs), one of the building blocks of fat, promotes food consumption, activates reward circuitry, and is thought to contribute to hedonic feeding underlying many metabolism-related disorders. Despite a role in the etiology of metabolic diseases, little is known about how dietary fats are detected by the gustatory system to promote feeding. Previously, we showed that a broad population of sugar-sensing taste neurons expressing Gustatory Receptor 64f (Gr64f) is required for reflexive feeding responses to both FAs and sugars. Here, we report a genetic silencing screen to identify specific populations of taste neurons that mediate fatty acid (FA) taste. We find neurons identified by expression of Ionotropic Receptor 56d (IR56d) are necessary and sufficient for reflexive feeding response to FAs. Functional imaging reveals that IR56d-expressing neurons are responsive to short- and medium-chain FAs. Silencing IR56d neurons selectively abolishes FA taste, and their activation is sufficient to drive feeding responses. Analysis of co-expression with Gr64f identifies two subpopulations of IR56d-expressing neurons. While physiological imaging reveals that both populations are responsive to FAs, IR56d/Gr64f neurons are activated by medium-chain FAs and are sufficient for reflexive feeding response to FAs. Moreover, flies can discriminate between sugar and FAs in an aversive taste memory assay, indicating that FA taste is a unique modality in Drosophila. Taken together, these findings localize FA taste within the Drosophila gustatory center and provide an opportunity to investigate discrimination between different categories of appetitive tastants. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
21. Use of multivariate analysis for synchrotron micro-XANES analysis of iron valence state in amphiboles.
- Author
-
DYAR, M. DARBY, BREVES, ELLY A., GUNTER, MICKEY E., LANZIROTTI, ANTONIO, TUCKER, JONATHAN M., CAREY, C. J., PEEL, SAMANTHA E., BROWN, ELIZABETH B., OBERTI, ROBERTA, LEROTIC, MIRNA, and DELANEY, JEREMY S.
- Subjects
AMPHIBOLES ,MULTIVARIATE analysis ,VALENCE (Chemistry) ,IRON analysis ,SPECTRUM analysis - Abstract
Microanalysis of Fe
3+ /ΣFe in geological samples using synchrotron-based X-ray absorption spectroscopy has become routine since the introduction of standards and model compounds. Existing calibrations commonly use least-squares linear combinations of pre-edge data from standard reference spectra with known coordination number and valence state acquired on powdered samples to avoid preferred orientation. However, application of these methods to single mineral grains is appropriate only for isometric minerals and limits their application to analysis of in situ grains in thin sections. In this work, a calibration suite developed by acquiring X-ray absorption near-edge spectroscopy (XANES) data from amphibole single crystals with the beam polarized along the major optical directions (X, Y, and Z) is employed. Seven different methods for predicting %Fe3+ were employed based on (1) areanormalized pre-edge peak centroid, (2) the energy of the main absorption edge at the location where the normalized edge intensity has the highest R2 correlation with Fe3+ /ΣFe, (3) the ratio of spectral intensities at two energies determined by highest R2 correlation with Fe3+ /ΣFe, (4) use of the slope (first derivative) at every channel to select the best predictor channel, (5 and 6) partial least-squares models with variable and constant numbers of components, and (7) least absolute shrinkage and selection operator models. The latter three sophisticated multivariate analysis techniques for predicting Fe3+ /ΣFe show significant improvements in accuracy over the former four types of univariate models. Fe3+ /ΣFe can be measured in randomly oriented amphibole single crystals with an accuracy of ±5.5-6.2% absolute. Multivariate approaches demonstrate that for amphiboles main edge and EXAFS regions contain important features for predicting valence state. This suggests that in this mineral group, local structural changes accommodating site occupancy by Fe3+ vs. Fe2+ have a pronounced (and diagnostic) effect on the XAS spectra that can be reliably used to precisely constrain Fe3+ /ΣFe. [ABSTRACT FROM AUTHOR]- Published
- 2016
- Full Text
- View/download PDF
22. Glycoprotein IIb-IIIa-liposomes bind fibrinogen but do not undergo fibrinogen-mediated aggregation.
- Author
-
Sloan, Stephen M., Brown, Elizabeth B., Qingde Liu, and Forjmovic, Mony M.
- Subjects
- *
GLYCOPROTEINS , *BINDING sites , *FIBRINOGEN , *BLOOD platelet aggregation - Abstract
Investigates the binding effect of glycoprotein IIb-IIIa-liposomes to fibrinogen in platelet aggregation. Mechanism of the platelet cross-binding; Technique used in evaluating the characteristic of fibrinogen binding; Accessibility of Fg υ terminus for particle cross-bridging.
- Published
- 2000
- Full Text
- View/download PDF
23. Neurological, neuropsychological, and behavioral correlates of Klinefelter's syndrome.
- Author
-
HARKULICH, JOHN F., MARCHNER, THOMAS J., BROWN, ELIZABETH B., Harkulich, J F, Marchner, T J, and Brown, E B
- Published
- 1979
24. Targeted single cell expression profiling identifies integrators of sleep and metabolic state.
- Author
-
Shih MM, Zhang J, Brown EB, Dubnau J, and Keene AC
- Abstract
Animals modulate sleep in accordance with their internal and external environments. Metabolic cues are particularly potent regulators of sleep, allowing animals to alter their sleep timing and amount depending on food availability and foraging duration. The fruit fly, Drosophila melanogaster , suppresses sleep in response to acute food deprivation, presumably to forage for food. This process is dependent on a single pair of Lateral Horn Leucokinin (LHLK) neurons, that secrete the neuropeptide Leucokinin. These neurons signal to insulin producing cells and suppress sleep under periods of starvation. The identification of individual neurons that modulate sleep-metabolism interactions provides the opportunity to examine the cellular changes associated with sleep modulation. Here, we use single-cell sequencing of LHLK neurons to examine the transcriptional responses to starvation. We validate that a Patch-seq approach selectively isolates RNA from individual LHLK neurons. Single-cell CEL-Seq comparisons of LHLK neurons between fed and 24-hr starved flies identified 24 genes that are differentially expressed in accordance with starvation state. In total, 12 upregulated genes and 12 downregulated genes were identified. Gene-ontology analysis showed an enrichment for Attacins , a family of anti-microbial peptides, along with several transcripts with diverse roles in regulating cellular function. Targeted knockdown of differentially expressed genes identified multiple genes that function within LHLK neurons to regulate sleep-metabolism interactions. Functionally validated genes include an essential role for the E3 ubiquitin Ligase insomniac , the sorbitol dehydrogenase Sodh1 , as well as AttacinC and AttacinB in starvation-induced sleep suppression. Taken together, these findings provide a pipeline for identifying novel regulators of sleep-metabolism interactions within individual neurons.
- Published
- 2024
- Full Text
- View/download PDF
25. Aging is associated with a modality-specific decline in taste.
- Author
-
Brown EB, Lloyd E, Martin-Peña A, McFarlane S, Dahanukar A, and Keene AC
- Abstract
Deficits in chemosensory processing are associated with healthy aging, as well as numerous neurodegenerative disorders, including Alzheimer's Disease (AD). In many cases, chemosensory deficits are harbingers of neurodegenerative disease, and understanding the mechanistic basis for these changes may provide insight into the fundamental dysfunction associated with aging and neurodegeneration. The fruit fly, Drosophila melanogaster , is a powerful model for studying chemosensation, aging, and aging-related pathologies, yet the effects of aging and neurodegeneration on chemosensation remain largely unexplored in this model, particularly with respect to taste. To determine whether the effects of aging on taste are conserved in flies, we compared the response of flies to different appetitive tastants. Aging impaired response to sugars, but not medium-chain fatty acids that are sensed by a shared population of neurons, revealing modality-specific deficits in taste. Selective expression of the human amyloid beta (Aβ) 1-42 peptide bearing the Arctic mutation (E693E) associated with early onset AD in the neurons that sense sugars and fatty acids phenocopies the effects of aging, suggesting that the age-related decline in response is localized to gustatory neurons. Functional imaging of gustatory axon terminals revealed reduced response to sugar, but not fatty acids. Axonal innervation of the fly taste center was largely intact in aged flies, suggesting that reduced sucrose response does not derive from neurodegeneration. Conversely, expression of the amyloid peptide in sweet-sensing taste neurons resulted in reduced innervation of the primary fly taste center. A comparison of transcript expression within the sugar-sensing taste neurons revealed age-related changes in 66 genes, including a reduction in odorant-binding protein class genes that are also expressed in taste sensilla. Together, these findings suggest that deficits in taste detection may result from signaling pathway-specific changes, while different mechanisms underly taste deficits in aged and AD model flies. Overall, this work provides a model to examine cellular deficits in neural function associated with aging and AD.
- Published
- 2024
- Full Text
- View/download PDF
26. Perturbation of the insomnia WDR90 GWAS locus pinpoints rs3752495 as a causal variant influencing distal expression of neighboring gene, PIG-Q .
- Author
-
Sonti S, Littleton SH, Pahl MC, Zimmerman AJ, Chesi A, Palermo J, Lasconi C, Brown EB, Pippin JA, Wells AD, Doldur-Balli F, Pack AI, Gehrman PR, Keene AC, and Grant SFA
- Abstract
Although genome wide association studies (GWAS) have been crucial for the identification of loci associated with sleep traits and disorders, the method itself does not directly uncover the underlying causal variants and corresponding effector genes. The overwhelming majority of such variants reside in non-coding regions and are therefore presumed to impact the activity of cis -regulatory elements, such as enhancers. Our previously reported 'variant-to-gene mapping' effort in human induced pluripotent stem cell (iPSC)-derived neural progenitor cells (NPCs), combined with validation in both Drosophila and zebrafish, implicated PIG-Q as a functionally relevant gene at the insomnia ' WDR90 ' locus. However, importantly that effort did not characterize the corresponding underlying causal variant at this GWAS signal. Specifically, our genome-wide ATAC-seq and high-resolution promoter-focused Capture C datasets generated in this cell setting brought our attention to a shortlist of three tightly neighboring single nucleotide polymorphisms (SNPs) in strong linkage disequilibrium in a candidate intronic enhancer region of WDR90 that contacted the open PIG-Q promoter. The objective of this study was to investigate the influence of the proxy SNPs collectively and then individually on PIG-Q modulation and to pinpoint the causal "regulatory" variant among the three SNPs. Starting at a gross level perturbation, deletion of the entire region harboring all three SNPs in human iPSC-derived neural progenitor cells via CRISPR-Cas9 editing and subsequent RNA sequencing revealed expression changes in specific PIG-Q transcripts. Results from more refined individual luciferase reporter assays for each of the three SNPs in iPSCs revealed that the intronic region with the rs3752495 risk allele induced a ~2.5-fold increase in luciferase expression ( n =10). Importantly, rs3752495 also exhibited an allele specific effect, with the risk allele increasing the luciferase expression by ~2-fold compared to the non-risk allele. In conclusion, our variant-to-function approach and subsequent in vitro validation implicates rs3752495 as a causal insomnia risk variant embedded at the WDR90-PIG-Q locus., Competing Interests: DISCLOSURE STATEMENT Financial Disclosure: The authors have no financial disclosures Nonfinancial Disclosure: The authors have no conflicts of interest to declare
- Published
- 2023
- Full Text
- View/download PDF
27. Variant-to-gene mapping followed by cross-species genetic screening identifies GPI-anchor biosynthesis as a regulator of sleep.
- Author
-
Palermo J, Chesi A, Zimmerman A, Sonti S, Pahl MC, Lasconi C, Brown EB, Pippin JA, Wells AD, Doldur-Balli F, Mazzotti DR, Pack AI, Gehrman PR, Grant SFA, and Keene AC
- Subjects
- Animals, Humans, Genome-Wide Association Study methods, Zebrafish genetics, Chromosome Mapping, Genetic Testing, Sleep genetics, Glycosylphosphatidylinositols genetics, Drosophila melanogaster genetics
- Abstract
Genome-wide association studies (GWAS) in humans have identified loci robustly associated with several heritable diseases or traits, yet little is known about the functional roles of the underlying causal variants in regulating sleep duration or quality. We applied an ATAC-seq/promoter focused Capture C strategy in human iPSC-derived neural progenitors to carry out a "variant-to-gene" mapping campaign that identified 88 candidate sleep effector genes connected to relevant GWAS signals. To functionally validate the role of the implicated effector genes in sleep regulation, we performed a neuron-specific RNA interference screen in the fruit fly, Drosophila melanogaster , followed by validation in zebrafish. This approach identified a number of genes that regulate sleep including a critical role for glycosylphosphatidylinositol (GPI)-anchor biosynthesis. These results provide the first physical variant-to-gene mapping of human sleep genes followed by a model organism-based prioritization, revealing a conserved role for GPI-anchor biosynthesis in sleep regulation.
- Published
- 2023
- Full Text
- View/download PDF
28. Ir56d -dependent fatty acid responses in Drosophila uncover taste discrimination between different classes of fatty acids.
- Author
-
Brown EB, Shah KD, Palermo J, Dey M, Dahanukar A, and Keene AC
- Subjects
- Animals, CRISPR-Cas Systems, Drosophila genetics, Female, Gene Deletion, Odorants, Sensory Receptor Cells physiology, Drosophila physiology, Fatty Acids classification, Fatty Acids metabolism, Neurons physiology, Taste Perception physiology
- Abstract
Chemosensory systems are critical for evaluating the caloric value and potential toxicity of food. While animals can discriminate between thousands of odors, much less is known about the discriminative capabilities of taste systems. Fats and sugars represent calorically potent and attractive food sources that contribute to hedonic feeding. Despite the differences in nutritional value between fats and sugars, the ability of the taste system to discriminate between different rewarding tastants is thought to be limited. In Drosophila , taste neurons expressing the ionotropic receptor 56d ( IR56d ) are required for reflexive behavioral responses to the medium-chain fatty acid, hexanoic acid. Here, we tested whether flies can discriminate between different classes of fatty acids using an aversive memory assay. Our results indicate that flies are able to discriminate medium-chain fatty acids from both short- and long-chain fatty acids, but not from other medium-chain fatty acids. While IR56d neurons are broadly responsive to short-, medium-, and long-chain fatty acids, genetic deletion of IR56d selectively disrupts response to medium-chain fatty acids. Further, IR56d+ GR64f + neurons are necessary for proboscis extension response (PER) to medium-chain fatty acids, but both IR56d and GR64f neurons are dispensable for PER to short- and long-chain fatty acids, indicating the involvement of one or more other classes of neurons. Together, these findings reveal that IR56d is selectively required for medium-chain fatty acid taste, and discrimination of fatty acids occurs through differential receptor activation in shared populations of neurons. Our study uncovers a capacity for the taste system to encode tastant identity within a taste category., Competing Interests: EB, KS, JP, MD, AD, AK No competing interests declared, (© 2021, Brown et al.)
- Published
- 2021
- Full Text
- View/download PDF
29. Ade2 Functions in the Drosophila Fat Body To Promote Sleep.
- Author
-
Yurgel ME, Shah KD, Brown EB, Burns C, Bennick RA, DiAngelo JR, and Keene AC
- Subjects
- Animals, Female, Glucose metabolism, Triglycerides metabolism, Carbon-Nitrogen Ligases physiology, Drosophila physiology, Fat Body physiology, Sleep physiology
- Abstract
Metabolic state is a potent modulator of sleep and circadian behavior, and animals acutely modulate their sleep in accordance with internal energy stores and food availability. Across phyla, hormones secreted from adipose tissue act in the brain to control neural physiology and behavior to modulate sleep and metabolic state. Growing evidence suggests the fat body is a critical regulator of complex behaviors, but little is known about the genes that function within the fat body to regulate sleep. To identify molecular factors functioning in non-neuronal tissues to regulate sleep, we performed an RNAi screen selectively knocking down genes in the fat body. We found that knockdown of Phosphoribosylformylglycinamidine synthase / Pfas (Ade2 ), a highly conserved gene involved the biosynthesis of purines, sleep regulation and energy stores. Flies heterozygous for multiple Ade2 mutations are also short sleepers and this effect is partially rescued by restoring Ade2 to the Drosophila fat body. Targeted knockdown of Ade2 in the fat body does not alter arousal threshold or the homeostatic response to sleep deprivation, suggesting a specific role in modulating baseline sleep duration. Together, these findings suggest Ade2 functions within the fat body to promote both sleep and energy storage, providing a functional link between these processes., (Copyright © 2018 Yurgel et al.)
- Published
- 2018
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.