Search

The use of biomass as renewable feedstock for commodity chemicals may largely benefit from the successful development and application of heterogeneous catalysts for decomposition processes. The present investigation combines density functional theory and Christiansen-like microkinetic analysis to describe, at the atomistic level, the mechanisms related to the conversion of oxygenated biomass compounds to deoxygenated and semi-saturated hydrocarbons on a subnanometric Pt10 cluster. The DFT calculations and the kinetic analysis based on the evaluated free energy variations, associated with both elementary step barriers and rearrangement/desorption processes occurring on the cluster, suggest that benzene is the preferred product, together with a compound still bearing oxygen, cyclopentadienone, which would form as a minor product only at high temperature. Other than highlighting the role of the peculiar interaction between carbon and platinum, the reported investigation underlines the importance of cluster fluxionality and reorganization ability in promoting catalyzed reactions. [ABSTRACT FROM AUTHOR]

The reaction steps involved in the 5‐hydroxymethylfurfural to 2,5‐furandicarboxylic acid conversion by means of H2O2 were investigated employing a dedicated computational protocol based on density functional theory. The catalytic environment of choice was a molecular model representing a portion of the halloysite nanotube outer surface, functionalized by an organosilane, the 3‐aminopropyltriethoxysilane, whose amino group bonds one gold atom. At this stage of the investigation, the process was fully detailed in terms of the interactions between the reaction intermediates and the catalyst, and the reaction standard free energies. In addition, the energy barriers of the elementary steps involving the hydrogen migration from the adsorbed organic species to the gold atom were analyzed. On the basis of the interaction geometries, a certain distinction among the preferred reaction path can be inferred as a function of the net negative charge characterizing the catalyst outer surface. Since the inner surface of halloysite can represent the acid environment needed to obtain 5‐hydroxymethylfurfural through dehydration of fructose, the present study is framed in a wider research field where the possibility to consider functionalized halloysite as one‐pot reactor for the valorization of biomass is explored. [ABSTRACT FROM AUTHOR]

In a scenario of declining fossil resources and increasing demand for renewable and sustainable alternatives, biomass is the only source able to offer an easy and gradual transition in the use of current energy technologies based on the exploitation of carbon derivatives. Its conversion to liquid fuels has oriented our study towards the computational mechanistic analysis of the guaiacol catalytic hydrodeoxygenation, which is currently considered one of the most challenging routes for upgrading biomass-derived bio-oils. For this purpose, a subnanometric Pt10 platinum cluster was chosen as the catalyst model, with Pt as a computational reference element for catalytic hydrogenation, and guaiacol as a model compound of bio-oils. DFT calculations revealed that the energy barriers related to the cleavage of C(sp2)–O bonds in the direct deoxygenation mechanism are significantly lower (by an average of 60 kJ mol−1) than those in the deoxygenation-through-hydrogenation mechanism in which C(sp3)–O bond breaking from a saturated ring occurs. Even if the ring hydrogenation is easier in the oxygenated compound, the analysis reveals that the direct deoxygenation mechanism is favoured at all temperatures. Furthermore, the results obtained highlight that, from a thermodynamic perspective, the removal of oxygen groups preferentially occurs by the elimination of the –OCH3 fragment as methanol and then of the –OH fragment as a water molecule. [ABSTRACT FROM AUTHOR]

A periodic, self-consistent planewave DFT study was carried out to explore the potential use of Pd6 clusters supported on a boron nitride sheet as a catalyst for the selective decomposition of formic acid (HCOOH) to CO2 and H2. The competition between formate (HCOO) and carboxyl (COOH) paths on catalytic sites, with different proximities to the support, was studied. Based on energetics alone, the reaction may mainly follow the HCOO route. Slightly lower activation energies were found at the lateral sites of the cluster as compared to top face sites. This is particularly true for the bidentate to monodentate HCOO conversion. Through comparison of results with similar studies on HCOOH decomposition on extended Pd surfaces, it was demonstrated that the existence of undercoordinated sites in the sub-nanometer cluster could play a key role in preferentially stabilizing HCOO over COOH, which is a common CO precursor in this reaction. A hydrogen spillover mechanism was also investigated; migration toward the boron nitride support is not favorable, at least in the early stages of the reaction. However, hydrogen diffusion on the cluster has low barriers compared to those involved in formic acid decomposition. [ABSTRACT FROM AUTHOR]

The fragmentation of molecular hydrogen on N-doped carbon networks was investigated by using molecular (polyaromatic macrocycles) as well as truncated and periodic (carbon nanotubes) models. The computational study was focused on the ergonicity analysis of the reaction and on the properties of the transition states involved when constellations of three or four pyridinic nitrogen atom defects are present in the carbon network. Calculations show that whenever N-defects are embedded in species characterized by large conjugated π-systems, either in polyaromatic macrocycles or carbon nanotubes, the corresponding H2 bond cleavage is largely exergonic. The fragmentation Gibbs free energy is affected by the final arrangement of the hydrogen atoms on the defect and by the extension of the π-electron cloud, but it is not influenced by the curvature of the system. [ABSTRACT FROM AUTHOR]

Selective dehydrogenation of the biomass-derived lignan hydroxymatairesinol (HMR) to oxomatairesinol (oxoMAT) was studied over an Au/Al2O3 catalyst. The reaction was carried out in a semi-batch glass reactor at 343 K under two different gas atmospheres, namely produced through synthetic air or nitrogen. The studied reaction is, in fact, an example of secondary-alcohol oxidation over an Au catalyst. Thus, the investigated reaction mechanism of HMR oxidative dehydrogenation is useful for the fundamental understanding of other secondary-alcohol dehydrogenation over Au surfaces. To investigate the elementary catalytic steps ruling both oxygen-free- and oxygen-assisted dehydrogenation of HMR to oxoMAT, the reactions were mimicked in a vacuum over an Au28 cluster. Adsorption of the involved molecular species-O2, three different HMR diastereomers (namely, one SRR and two RRR forms), and the oxoMAT derivative-were also studied at the DFT level. In particular, the energetic and structural differences between SRR-HMR and RRR-HMR diastereomers on the Au28 cluster were analyzed, following different reaction pathways for the HMR dehydrogenation that occur in presence or absence of oxygen. The corresponding mechanisms explain the higher rates of the experimentally observed oxygen-assisted reaction, mostly depending on the involved HMR diastereomer surface conformations. The role of the support was also elucidated, considering a very simple Au28 charged model that explains the experimentally observed high reactivity of the Au/Al2O3 catalyst. [ABSTRACT FROM AUTHOR]

The proton dynamics in Y-doped BaZrO3 derivatives, in particular the different dopant environments within a Pm ${\bar 3}$ m cubic framework, were studied by using classical molecular dynamics (MD) calculations. Single- and double substitution of zirconium by yttrium atoms was considered. The presence of yttrium induced variations in the surrounding oxygen sites, according to their local geometrical arrangements. The differences among such distinct oxygen sites became evident when protons interacted with them and upon changes in the temperature. So, different proton transfer pathways, which had different energy barriers, characterized the topologically different oxygen sites. The experimental proton-hopping activation energy was only reproduced in those structures in which two yttrium atoms formed a Y-O-Y arrangement, which also acted as multilevel protonic traps. Protonic conduction in these materials could be improved by avoiding such yttrium clustering, hence preventing the formation of the protonic traps. [ABSTRACT FROM AUTHOR]

Y-doped BaZrO3 derivatives were studied by density functional theory (DFT) to investigate the local arrangements of the octahedral sites in Pm ${\bar 3}$ m cubic frameworks. Single- and double substitution of zirconium by yttrium were considered, including in the presence of a nearby oxygen vacancy. Although the structural symmetry of undoped barium zirconate was not modified after yttrium doping, the presence of yttrium induced several differences in the oxygen sites around it, according to the local geometrical arrangement of yttrium in the host matrix. As an example, the differences between such oxygen sites were shown in the presence of a proton. In this case, different stabilization energies characterized the protonated fragments. Only in those structures, in which two yttrium atoms were neighbors (i.e., formed Y-O-Y moieties), were the relative energy differences between the corresponding proton stable sites in agreement with the order of magnitude of the experimental proton-hopping activation energies. The distribution of such energy differences suggested a grouping of the oxygen atoms into three sets, which had peculiar structural features that weren′t easily deducible from their topologies. The existence of proton traps was also discussed on the basis of the energy-difference distributions. [ABSTRACT FROM AUTHOR]

It has been recently reported that IRMOF-3 [Gascon et al., J. Catal, 2009, 261, 75] may behave as a basic catalyst, active in the Knoevenagel condensation. In particular, it has been shown that the basicity of aniline-like amino moieties is enhanced, along with the catalytic activity, when incorporated into MOF structures. The computational study here was aimed at finding possible atomistic explanations of the increased basicity and catalytic activity of the IRMOF-3 embedded aniline groups, experimentally claimed. It was, moreover, aimed at guessing a reaction mechanism for the IRMOF-3 catalysed Knoevenagel condensation of benzaldehyde and ethyl-cyanoacetate. Within the DFT framework we have studied structure and basicity properties of IRMOF-3 and we have analysed the energetics of the catalytic cycle as well as of possible deactivation paths, including it. The increased basicity of IRMOF-3 over other amminic catalysts has been explained viathe formation of protonated conjugate derivatives, involving hydrogen-bonds and originating quasi-planar 6-term rings. Several plausibile reaction steps have been moreover taken into account and a mechanism for the Knoevenagel condensation, including catalyst deactivation, has been proposed for aniline molecules and embedded aniline moieties. This allowed us to suggest that the increased IRMOF-3 activity, as a basic catalyst, should be mostly related to its water adsorption ability, preserving the properties of the catalytically active amino moieties. [ABSTRACT FROM AUTHOR]

Chloro-bis(glycylglycinate)germanium(iv) chloride, [Cl(glygly)2Ge]Cl, was synthesized and characterized in the solid state by elemental analysis, thermogravimetry and infrared spectroscopy. Solution studies were also performed by 1H-NMR and 13C-NMR in dimethylsulfoxide (DMSO-d6) and by electric conductivity. The structural determination of the complex and the interpretation of the spectroscopic results were performed by employing an integrated computational approach, based on a systematic conformational search analysis on the [Cl(glygly)2Ge]+ion performed by the Systematic Conformational Search Algorithm (SCSA) code, working at the hybrid B3LYP/6-31G(d,p) level. The combination of experimental and computational findings allowed us to draw the structure of the complex both in solid and in solution, showing the usefulness of the conformational search as well as the need to also take into account relatively high energy structures and secondary minima to obtain a clear picture of the title compound. [ABSTRACT FROM AUTHOR]

Two reactive pathways are described for the dissociative adsorption of a hydrogen molecule on a Pd4 pyramidal cluster, by using DFT/B3LYP and CASSCF/CASPT2 computational methods. Because of the different spin multiplicities of the cluster in the initial and final states, the reaction proceeds through a spin multiplicity change, which occurs close to the transition states. The activation energy values are very similar when the DFT method is used, whereas the CASPT2 calculations predict that the concerted mechanism is disfavored. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010 [ABSTRACT FROM AUTHOR]

The processes involved in the butene hydro-isomerization, occurring on a small palladium cluster in the presence of dissociated hydrogen, have been investigated by means of DFT and DFT/MM approaches. This study has been performed both on an isolated (unsupported) Pd9cluster and on the same cluster when it is supported on a portion of a single-walled armchair(6,6) carbon nanotube. The study follows another investigation which has already been published concerning the adsorption, fragmentation and diffusion of hydrogen on the same metal cluster. The main aspects involved in the parallel reaction steps of the whole hydro-isomerization mechanisms are not strongly affected by the presence of the support, which does, however, modify the energetics involved, likely due to the presence of strong metal surface interaction (SMSI) effects. Noticeably, a common step corresponding to the diffusion of one hydrogen atom is present. This diffusion step creates a characteristic semihydrogenated surface species along the occurrence of all the reaction pathways. Hence, the semihydrogenated species is a kind of molecular node able to connect the transformation pathways of the different surface species involved in the hydro-isomerization processes. Considering the energetics involved in the processes of both supported and unsupported systems and being aware of the simplification introduced in studying the same systems, it is still possible (i) to emphasize the basis importance of taking account of the support in modeling catalytic properties and (ii) to state that the models proposed here are able to capture the main characteristics of the title reaction. [ABSTRACT FROM AUTHOR]

An extensive and systematic conformational search was performed on the two epimers of the natural lignan 7-hydroxymatairesinol (HMR), by means of a home-made Systematic Conformational Search Analysis (SCSA) code, designed to select more and more stable conformers through sequential geometry optimization of trial structures at increasing levels of calculation theory. In the present case, the starting molecular structures were selected by the semi-empirical AM1 method and filtered – i.e. decreased in number by choosing the more stable species – on the basis of their energy calculated by the HF method and the 6-31G(d) basis set. The geometries obtained were further refined by performing density functional theory (DFT) optimizations, using the B3LYP functional and the 6-31G(d,p) basis set, both in vacuo and in ethanol solution. This procedure allowed us to isolate, at a high level of theory, three groups of epimer conformers characterized by open, semi-folded, and folded conformations. Moreover, the SCSA allowed us to describe a conformational space made-up by about 20 species for each of the two epimers. The corresponding energy content of these species was within 27 kJ mol-1 from the absolute minimum found, both in vacuo and in ethanol solution. The conformational analysis, followed by the inspection of the stereochemistry of the two most stable conformers of both epimers, provides support in rationalizing the proposed reaction mechanism of the catalytic hydrogenolysis of the HMR to matairesinol (MAT). Copyright © 2009 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]