17 results on '"Fiege, J."'
Search Results
2. The James Clerk Maxwell Telescope Legacy Survey of Nearby Star‐forming Regions in the Gould Belt
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Ward‐Thompson, D., Di Francesco, J., Hatchell, J., Hogerheijde, M. R., Nutter, D., Bastien, P., Basu, S., Bonnell, I., Bowey, J., Brunt, C., Buckle, J., Butner, H., Cavanagh, B., Chrysostomou, A., Curtis, E., Davis, C. J., Dent, W. R. F., van Dishoeck, E., Edmunds, M. G., Fich, M., Fiege, J., Fissel, L., Friberg, P., Friesen, R., Frieswijk, W., Fuller, G. A., Gosling, A., Graves, S., Greaves, J. S., Helmich, F., Hills, R. E., Holland, W. S., Houde, M., Jayawardhana, R., Johnstone, D., Joncas, G., Kirk, H., Kirk, J. M., Knee, L. B. G., Matthews, B., Matthews, H., Matzner, C., Moriarty‐Schieven, G. H., Naylor, D., Padman, R., Plume, R., Rawlings, J. M. C., Redman, R. O., Reid, M., Richer, J. S., Shipman, R., Simpson, R. J., Spaans, M., Stamatellos, D., Tsamis, Y. G., Viti, S., Weferling, B., White, G. J., Whitworth, A. P., Wouterloot, J., Yates, J., and Zhu, M.
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- 2007
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3. SiO as a chemical signature of outflows from bright,compact sources in MSX IR-dark clouds
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Feldman, P A, Redman, R O, Avery, L W, Francesco, J Di, Fiege, J D, Carey, S J, and Wyrowski, F
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- 2004
4. An Exploration of Tensor Virial Equilibrium in Magnetized Molecular Cloud Cores.
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Franzmann, E. L. and Fiege, J. D.
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MONTE Carlo method , *MOLECULAR clouds , *CALCULUS of tensors , *EQUILIBRIUM , *INTEGRATED software , *SOFTWARE architecture - Abstract
PolCat is a software package designed to generate and constrain models of triaxial, magnetized molecular cloud cores using submillimeter polarization and continuum intensity data. Such models often compare well with observational data, but they are mathematically degenerate. As a result, many allowed models are either very elongated or flattened, and far from virial equilibrium. We present a tensor virial analysis of PolCat models with the aim of developing an optional new regularization constraint that can be used on the fly during the PolCat modeling process. This constraint is intended to guide PolCat toward models that are in or close to equilibrium on all three principal axes. While we have found the expected families of spheroidal solutions in tensor virial balance, we have also found a population of triaxial cores that are in three-axis tensor virial equilibrium. We find that models generated using the virial constraint have much more realistic shapes, with very elongated or flattened solutions now absent. Thus, these show that the tensor virial constraint may be useful for restricting PolCat's solution space to more realistic models, thereby also reducing the degeneracy inherent in our approach. We also perform a Monte Carlo analysis to predict the range of projected axis ratios present in the population of equilibrium solutions to suggest how these cores may appear when observed. [ABSTRACT FROM AUTHOR]
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- 2020
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5. ARFI-Elastographie der Leberbeteiligung bei Zystischer Fibrose.
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Fiege, J., Mainz, J., Tabori, H., Renz, D., Stenzel, M., and Mentzel, H.-J.
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Copyright of Monatsschrift Kinderheilkunde is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2017
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6. SiO as a chemical signature of outflows from bright, compact sources in MSX IR-dark clouds.
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Feldman, P. A., Redman, R. O., Avery, L. W., Di Francesco, J., Fiege, J. D., Carey, S. J., and Wyrowski, F.
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STAR formation ,STELLAR evolution ,BIPOLAR outflows (Astrophysics) ,ASTROPHYSICS ,PHYSICAL cosmology - Abstract
Copyright of Canadian Journal of Chemistry is the property of Canadian Science Publishing and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2004
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7. PARETO: A New Multiobjective IMRT Treatment Planning System
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Potrebko, P.S., Fiege, J., Champion, H., Cull, A., McCurdy, B., West, M., Lyn, E., Butler, J., and Fewer, D.
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- 2011
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8. 407 poster MULTI-OBJECTIVE SBRT TREATMENT PLANNING USING PARETO
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Potrebko, P., Fiege, J., McCurdy, B., Champion, H., and Cull, A.
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- 2011
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9. Optimization of Beam Orientations for SBRT Treatment Planning using PARETO
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Potrebko, P.S., Fiege, J., Cull, A., Champion, H., and McCurdy, B.
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- 2010
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10. Role of afferent and efferent renal nerves in the development of AngII-salt hypertension in rats.
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Foss JD, Fiege J, Shimizu Y, Collister JP, Mayerhofer T, Wood L, and Osborn JW
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- Afferent Pathways physiology, Angiotensin II toxicity, Animals, Efferent Pathways physiology, Hypertension etiology, Kidney physiology, Male, Rats, Rats, Sprague-Dawley, Sodium Chloride, Dietary toxicity, Hypertension physiopathology, Kidney innervation, Peripheral Nerves physiology, Salt Stress
- Abstract
Hypertension is the leading modifiable risk factor for death worldwide, yet the causes remain unclear and treatment remains suboptimal. Catheter-based renal denervation (RDNX) is a promising new treatment for resistant hypertension, but the mechanisms underlying its antihypertensive effect remain unclear. We recently found that RDNX attenuates deoxycorticosterone acetate-salt hypertension and that this is dependent on ablation of afferent renal nerves and is associated with decreased renal inflammation. To determine if this is common to other models of salt-sensitive hypertension, rats underwent complete RDNX (n = 8), selective ablation of afferent renal nerves (n = 8), or sham denervation (n = 8). Mean arterial pressure (MAP) and heart rate were measure by telemetry and rats were housed in metabolic cages for measurement of sodium and water balance. Rats were then subjected to angiotensin II (AngII)-salt hypertension (10 ng/kg/min, intravenous + 4% NaCl diet) for 2 weeks. At the end of the study, renal T-cell infiltration was quantified by flow cytometry. AngII resulted in an increase in MAP of ~50 mmHg in all three groups with no between group differences, and a transient bradycardia that was blunted by selective ablation of afferent renal nerves. Sodium and water balance were unaffected by AngII-salt treatment and similar between groups. Lastly, AngII infusion was not associated with T-cell infiltration into the kidneys, and T-cell counts were unaffected by the denervation procedures. These results suggest that AngII-salt hypertension in the rat is not associated with renal inflammation and that neither afferent nor efferent renal nerves contribute to this model., (© 2018 The Authors. Physiological Reports published by Wiley Periodicals, Inc. on behalf of The Physiological Society and the American Physiological Society.)
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- 2018
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11. Correction: A bioenergetic mechanism for amoeboid-like cell motility profiles tested in a microfluidic electrotaxis assay.
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Peretz-Soroka H, Tirosh R, Hipolito J, Huebner E, Alexander M, Fiege J, and Lin F
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Correction for 'A bioenergetic mechanism for amoeboid-like cell motility profiles tested in a microfluidic electrotaxis assay' by Hagit Peretz-Soroka et al., Integr. Biol., 2017, DOI: .
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- 2017
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12. A bioenergetic mechanism for amoeboid-like cell motility profiles tested in a microfluidic electrotaxis assay.
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Peretz-Soroka H, Tirosh R, Hipolito J, Huebner E, Alexander M, Fiege J, and Lin F
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- Actin Cytoskeleton metabolism, Actins metabolism, Adenosine Triphosphate analogs & derivatives, Adenosine Triphosphate metabolism, Cytoplasm metabolism, Cytoplasmic Streaming, Healthy Volunteers, Humans, Hydrolysis, Lab-On-A-Chip Devices, Microfluidics, Models, Biological, Muscle Contraction, Myosins metabolism, Neutrophils metabolism, Cell Movement, Electrophysiological Phenomena, Energy Metabolism
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The amoeboid-like cell motility is known to be driven by the acidic enzymatic hydrolysis of ATP in the actin-myosin system. However, the electro-mechano-chemical coupling, whereby the free energy of ATP hydrolysis is transformed into the power of electrically polarized cell movement, is poorly understood. Previous experimental studies showed that actin filaments motion, cytoplasmic streaming, and muscle contraction can be reconstituted under actin-activated ATP hydrolysis by soluble non-filamentous myosin fragments. Thus, biological motility was demonstrated in the absence of a continuous protein network. These results lead to an integrative conceptual model for cell motility, which advocates an active role played by intracellular proton currents and cytoplasmic streaming (iPC-CS). In this model, we propose that protons and fluid currents develop intracellular electric polarization and pressure gradients, which generate an electro-hydrodynamic mode of amoeboid motion. Such energetic proton currents and active streaming are considered to be mainly driven by stereospecific ATP hydrolysis through myosin heads along oriented actin filaments. Key predictions of this model are supported by microscopy visualization and in-depth sub-population analysis of purified human neutrophils using a microfluidic electrotaxis assay. Three distinct phases in cell motility profiles, morphology, and cytoplasmic streaming in response to physiological ranges of chemoattractant stimulation and electric field application are revealed. Our results support an intrinsic electric dipole formation linked to different patterns of cytoplasmic streaming, which can be explained by the iPC-CS model. Collectively, this alternative biophysical mechanism of cell motility provides new insights into bioenergetics with relevance to potential new biomedical applications.
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- 2017
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13. Investigating multi-objective fluence and beam orientation IMRT optimization.
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Potrebko PS, Fiege J, Biagioli M, and Poleszczuk J
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- Algorithms, Humans, Male, Organs at Risk radiation effects, Radiotherapy Dosage, Radiotherapy Planning, Computer-Assisted methods, Radiotherapy, Intensity-Modulated adverse effects
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Radiation Oncology treatment planning requires compromises to be made between clinical objectives that are invariably in conflict. It would be beneficial to have a 'bird's-eye-view' perspective of the full spectrum of treatment plans that represent the possible trade-offs between delivering the intended dose to the planning target volume (PTV) while optimally sparing the organs-at-risk (OARs). In this work, the authors demonstrate Pareto-aware radiotherapy evolutionary treatment optimization (PARETO), a multi-objective tool featuring such bird's-eye-view functionality, which optimizes fluence patterns and beam angles for intensity-modulated radiation therapy (IMRT) treatment planning. The problem of IMRT treatment plan optimization is managed as a combined monolithic problem, where all beam fluence and angle parameters are treated equally during the optimization. To achieve this, PARETO is built around a powerful multi-objective evolutionary algorithm, called Ferret, which simultaneously optimizes multiple fitness functions that encode the attributes of the desired dose distribution for the PTV and OARs. The graphical interfaces within PARETO provide useful information such as: the convergence behavior during optimization, trade-off plots between the competing objectives, and a graphical representation of the optimal solution database allowing for the rapid exploration of treatment plan quality through the evaluation of dose-volume histograms and isodose distributions. PARETO was evaluated for two relatively complex clinical cases, a paranasal sinus and a pancreas case. The end result of each PARETO run was a database of optimal (non-dominated) treatment plans that demonstrated trade-offs between the OAR and PTV fitness functions, which were all equally good in the Pareto-optimal sense (where no one objective can be improved without worsening at least one other). Ferret was able to produce high quality solutions even though a large number of parameters, such as beam fluence and beam angles, were included in the optimization.
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- 2017
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14. Sci-Thur AM: Planning - 04: Evaluation of the fluence complexity, solution quality, and run efficiency produced by five fluence parameterizations implemented in PARETO multiobjective radiotherapy treatment planning software.
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Champion H, Fiege J, McCurdy B, Potrebko P, and Cull A
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Purpose: PARETO (Pareto-Aware Radiotherapy Evolutionary Treatment Optimization) is a novel multiobjective treatment planning system that performs beam orientation and fluence optimization simultaneously using an advanced evolutionary algorithm. In order to reduce the number of parameters involved in this enormous search space, we present several methods for modeling the beam fluence. The parameterizations are compared using innovative tools that evaluate fluence complexity, solution quality, and run efficiency., Methods: A PARETO run is performed using the basic weight (BW), linear gradient (LG), cosine transform (CT), beam group (BG), and isodose-projection (IP) methods for applying fluence modulation over the projection of the Planning Target Volume in the beam's-eye-view plane. The solutions of each run are non-dominated with respect to other trial solutions encountered during the run. However, to compare the solution quality of independent runs, each run competes against every other run in a round robin fashion. Score is assigned based on the fraction of solutions that survive when a tournament selection operator is applied to the solutions of the two competitors. To compare fluence complexity, a modulation index, fractal dimension, and image gradient entropy are calculated for the fluence maps of each optimal plan., Results: We have found that the LG method results in superior solution quality for a spine phantom, lung patient, and cauda equina patient. The BG method produces solutions with the highest degree of fluence complexity. Most methods result in comparable run times., Conclusion: The LG method produces superior solution quality using a moderate degree of fluence modulation., (© 2012 American Association of Physicists in Medicine.)
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- 2012
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15. PARETO: A novel evolutionary optimization approach to multiobjective IMRT planning.
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Fiege J, McCurdy B, Potrebko P, Champion H, and Cull A
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- Algorithms, Phantoms, Imaging, Radiotherapy Planning, Computer-Assisted methods, Radiotherapy, Intensity-Modulated methods, Software
- Abstract
Purpose: In radiation therapy treatment planning, the clinical objectives of uniform high dose to the planning target volume (PTV) and low dose to the organs-at-risk (OARs) are invariably in conflict, often requiring compromises to be made between them when selecting the best treatment plan for a particular patient. In this work, the authors introduce Pareto-Aware Radiotherapy Evolutionary Treatment Optimization (pareto), a multiobjective optimization tool to solve for beam angles and fluence patterns in intensity-modulated radiation therapy (IMRT) treatment planning., Methods: pareto is built around a powerful multiobjective genetic algorithm (GA), which allows us to treat the problem of IMRT treatment plan optimization as a combined monolithic problem, where all beam fluence and angle parameters are treated equally during the optimization. We have employed a simple parameterized beam fluence representation with a realistic dose calculation approach, incorporating patient scatter effects, to demonstrate feasibility of the proposed approach on two phantoms. The first phantom is a simple cylindrical phantom containing a target surrounded by three OARs, while the second phantom is more complex and represents a paraspinal patient., Results: pareto results in a large database of Pareto nondominated solutions that represent the necessary trade-offs between objectives. The solution quality was examined for several PTV and OAR fitness functions. The combination of a conformity-based PTV fitness function and a dose-volume histogram (DVH) or equivalent uniform dose (EUD) -based fitness function for the OAR produced relatively uniform and conformal PTV doses, with well-spaced beams. A penalty function added to the fitness functions eliminates hotspots. Comparison of resulting DVHs to those from treatment plans developed with a single-objective fluence optimizer (from a commercial treatment planning system) showed good correlation. Results also indicated that pareto shows promise in optimizing the number of beams., Conclusions: This initial evaluation of the evolutionary optimization software tool pareto for IMRT treatment planning demonstrates feasibility and provides motivation for continued development. Advantages of this approach over current commercial methods for treatment planning are many, including: (1) fully automated optimization that avoids human controlled iterative optimization and potentially improves overall process efficiency, (2) formulation of the problem as a true multiobjective one, which provides an optimized set of Pareto nondominated solutions refined over hundreds of generations and compiled from thousands of parameter sets explored during the run, and (3) rapid exploration of the final nondominated set accomplished by a graphical interface used to select the best treatment option for the patient.
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- 2011
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16. Development and testing of an audio-visual aid for improving infant oral health through primary caregiver education.
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Alsada LH, Sigal MJ, Limeback H, Fiege J, and Kulkarni GV
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- Caregivers education, Child, Preschool, Dental Caries prevention & control, Humans, Infant, Oral Health, Parents education, Surveys and Questionnaires, Audiovisual Aids, Health Education, Dental methods, Infant Care
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Purpose: To create and test an audio-visual (AV) aid for providing anticipatory guidance on infant oral health to caregivers., Methods: A DVD-video containing evidence-based information about infant oral health care and prevention in accordance with the American Academy of Pediatric Dentistry guidelines has been developed (www.utoronto.ca/dentistry/newsresources/kids/). It contains comprehensive anticipatory guidance in the areas of pregnancy, oral development, teething, diet and nutrition, oral hygiene, fluoride use, acquisition of oral bacteria, feeding and oral habits, causes and sequelae of early childhood caries, trauma prevention, early dental visits and regular dental visits. A questionnaire was developed to test the knowledge of expectant and young mothers (n = 11) and early childhood educators (n = 16) before and after viewing the video., Results: A significant lack of knowledge about infant oral health was indicated by the proportion of "I don"t know" (22%) and incorrect (19%) responses to the questionnaire before the viewing. Significant improvement in knowledge (32%; range -3% to 57%; p < 0.001) was indicated by the proportion of correct responses (91%) following a single viewing of the AV aid., Conclusion: This AV aid promises to be an effective tool in providing anticipatory guidance regarding infant oral health in high-risk populations. Unlike existing educational materials, this aid provides a comprehensive, self-directed, evidence-based approach to the promotion of infant oral health. Widespread application of this prevention protocol has the potential to result in greater awareness, increased use of dental services and reduced incidence of preventable oral disease in the target populations.
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- 2005
17. Reference databases of cytokine structure and function.
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Casciari JJ, Sato H, Durum SK, Fiege J, and Weinstein JN
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- Growth Substances chemistry, Interferons chemistry, Interleukins chemistry, Structure-Activity Relationship, Tumor Necrosis Factor-alpha chemistry, Cytokines chemistry, Cytokines physiology, Databases, Factual, Terminology as Topic
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- 1996
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