82 results on '"Gu, Yixin"'
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2. Speaking with the Learning of Odes: Cao Zhi's Representation of the Shijing and Its Hermeneutic Traditions in the Contexts of Han-Wei China
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Gu, Yixin
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- 2021
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3. Optimal Selection and Principles of Production Tubing in Deep-Water Gas Fields
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Duan, Dexiang, Li, Wanjun, Long, Yang, Qian, Feng, Wang, Gang, Zhou, Chuan, Feng, Jian, Gu, Yixin, Xiao, Yue, Zhou, Haiqiu, Ba, He, and Li, Ganlu
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- 2022
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4. Bicarbonate-enhanced iron-based Prussian blue analogs catalyze the Fenton-like degradation of p-nitrophenol
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Yang, Yiqiong, Gu, Yixin, Lin, Huidong, Jie, Borui, Zheng, Zenghui, and Zhang, Xiaodong
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- 2022
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5. Adsorption property of fluoride in water by metal organic framework: Optimization of the process by response surface methodology technique
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Yang, Yiqiong, Li, Xingyu, Gu, Yixin, Lin, Huidong, Jie, Borui, Zhang, Qianwen, and Zhang, Xiaodong
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- 2022
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6. Pneumatically Actuated Soft Robotic Hand and Wrist Exoskeleton for Motion Assistance in Rehabilitation.
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Ridremont, Tanguy, Singh, Inderjeet, Bruzek, Baptiste, Jamieson, Alexandra, Gu, Yixin, Merzouki, Rochdi, and Wijesundara, Muthu B. J.
- Abstract
Exoskeletons are being explored for assisting motion therapy for neurological impairment-related rehabilitation. Soft robotic exoskeletons are gaining more attention for upper-extremity applications due to their simplistic actuation mechanisms and compliant nature. To regain fine motor hand functions, it is desired to have both hand and wrist motions in a coordinated fashion, as most daily living tasks require a combination of both hand and wrist joint motions. However, a soft robotic exoskeleton with hand and wrist motion together is an underdeveloped area. This paper presents a pneumatically actuated soft robotic exoskeleton designed to provide coordinated assistive motion to the hand and wrist joints using PD-based feedback control. The results showed the potential of the exoskeleton to provide flexion/extension rehabilitation exercises and task-oriented rehabilitation practices. Additionally, the results have confirmed that the implemented PD control ensures that the exoskeleton reaches the targeted angular trajectories and velocities. Two modes, full and partial assistance, were successfully tested to verify the ability of the exoskeleton to accommodate varying levels of impairment. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Soft Robotic Bilateral Rehabilitation System for Hand and Wrist Joints.
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Ridremont, Tanguy, Singh, Inderjeet, Bruzek, Baptiste, Erel, Veysel, Jamieson, Alexandra, Gu, Yixin, Merzouki, Rochdi, and Wijesundara, Muthu B. J.
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WRIST joint ,JOINTS (Anatomy) ,SOFT robotics ,WRIST ,FINGER joint ,ROBOTIC exoskeletons - Abstract
Upper limb functionality is essential to perform activities of daily living. It is critical to investigate neurorehabilitation therapies in order to improve upper limb functionality in post-stroke patients. This paper presents a soft-robotic bilateral system to provide rehabilitation therapy for hand and wrist joints. A sensorized glove that tracks finger and wrist joint movements is worn on the healthy limb, which guides the movement of the paretic limb. The input of sensors from the healthy limb is provided to the soft robotic exoskeleton attached to the paretic limb to mimic the motion. A proportional derivative flow-based control algorithm is used to perform bilateral therapy. To test the feasibility of the developed system, two different applications are performed experimentally: (1) Wrist exercise with a dumbbell, and (2) Object pick-and-place task. The initial tests of the developed system verified its capability to perform bilateral therapy. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Potential Targets and Signaling Mechanisms of Cinnamaldehyde Enhancing Intestinal Function and Nutritional Regulation in Fat Greenling (Hexagrammos otakii).
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Gu, Yixin, Zhan, Yu, Guo, Yafeng, Hua, Wenyuan, Qi, Xin, Gu, Zhizhi, Cao, Shengnan, Chen, Yan, Xue, Zhuang, and Wang, Wei
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HEREDITY , *PROSTAGLANDIN receptors , *TRANSCRIPTION factors , *CHINESE medicine , *FAT , *MOLECULAR docking - Abstract
Cinnamaldehyde is an ideal feed additive with good immune enhancement and anti-inflammatory regulation effects. However, the anti-inflammatory regulation mechanism in fat greenling (Hexagrammos otakii, H. otakii) remains unclear. The nine targets of cinnamaldehyde were gathered in identified by the Traditional Chinese Medicine Systems Pharmacology database and Uniprot database, and 1,320 intestinal inflammation disease (IIF)-related proteins were screened from DrugBank, Online Mendelian Inheritance in Man (OMIM), Genecards, and Pharmacogenetics and Pharmacogenomics Knowledge Base (PHARMGKB) Databases. According to the Gene Ontology enrichment results and Kyoto Encyclopedia of Genes and Genomes pathway results, cinnamaldehyde may regulated the responses to bacteria, lipopolysaccharide, an inflammatory cytokine, and external stimuli via the nuclear factor kappa-B (NFκB) signaling pathway within on inflammatory network. In addition, the protein–protein interaction analysis assisted in obtaining the closely related inflammatory regulatory proteins, including the C5a anaphylatoxin chemotactic receptor 1 (C5aR1), transcription factor p65 (RELA), prostaglandin G/H synthase 2 (PTGS2), and toll-like receptor 4 (TLR4), which were confirmed as the bottleneck nodes of the network to be more deeply verified via the molecular docking. Moreover, a cinnamaldehyde feeding model was established for evaluating the anti-inflammatory effect of cinnamaldehyde in vivo. According to the current findings implied that cinnamaldehyde may play a protective role against IIF H. otakii by reducing inflammation through the C5 complement (C5)/C5aR1/interleukin-6 (IL-6) and TLR4/NFκB/PTGS2 pathway. The study focused on investigating the action mechanism of cinnamaldehyde on IIF through combining pharmacology and experimental verification in vivo, which provided a fresh perspective on the promoting effect of cinnamaldehyde on IIF in fish. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Comparative genomics of Helicobacter pullorum from different countries
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Zhou, Guilan, Liang, Hao, Gu, Yixin, Ju, Changyan, He, Lihua, Guo, Pengbo, Shao, Zhujun, Zhang, Jianzhong, and Zhang, Maojun
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- 2020
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10. Feasibility study on short radius sidetracking technology of old well in Hoja Gulluk Gas Field - A case study of H-1 well.
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Li, Hangyuan, Zhou, Tuo, Jin, Yulai, Zhou, Haiqiu, Xiao, Yue, Gu, Yixin, and Baletabieke, Bahedaer
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- 2023
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11. Analysis and countermeasures of drilling challenges in complex ultra-deep exploration wells in thrust structural belt with multiple salt layers.
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Zhang, Wei, Zhou, Tuo, Jin, Yulai, Xiao, Yue, Li, Hangyuan, Baletabieke, Bahedaer, and Gu, Yixin
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- 2023
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12. Effect of replacing fish meal with chicken gut meal on growth, immune parameters, and metabolism of juvenile Fat Greenling Hexagrammos otakii.
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Gu, Yixin, Peng, Tingting, Sun, Qian, Dai, Qianliang, Wei, Yanchao, Hua, Wenyuan, Wang, Yue, Chen, Bojin, Xue, Zhuang, and Wang, Wei
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FISH meal ,ACETYLCOENZYME A ,CHICKENS ,FATTY acid synthases ,ASPARTATE aminotransferase ,PEROXISOME proliferator-activated receptors ,ACID phosphatase ,LIPASES - Abstract
Objective: Chicken gut meal (CGM) is reasonably priced and rich in nutrients and can become a new source of protein in the diets of major aquatic products, such as fish and shrimp. Methods: An 8‐week feeding trial was conducted to comprehensively investigate the beneficial effects of CGM on juvenile Fat Greenling Hexagrammos otakii. Juveniles (1.58 ± 0.06 g [mean ± SE]) were fed with different levels of CGM in replacement of fish meal (FM) in the basal diet: 0% (CGM0), 25% (CGM25), 50% (CGM50), 75% (CGM75), and 100% (CGM100) replacement, representing a dietary CGM level of up to 40 g/kg. Result: The results showed that the percent weight gain; specific growth rate; feeding rate; feed conversion ratio; hepatosomatic index; and apparent digestibility coefficients of dry matter, protein, and lipid were significantly improved among the experimental groups. Moreover, the activities of superoxide dismutase and catalase were significantly increased in the CGM25 and CGM50 groups, respectively. The activities of acid phosphatase and alkaline phosphatase were significantly decreased in the CGM75 and CGM100 groups. Triglycerides and total cholesterol were significantly increased in the CGM50 and CGM75 groups, respectively. Fish in the CGM100 and CGM75 groups had significantly higher activities of aspartate aminotransferase and alanine aminotransferase than the control. Moreover, the relative expression levels of the fatty acid synthase and acetyl‐coenzyme A carboxylase alpha genes were significantly increased in the CGM75 and CGM100 groups, while the gene expression levels of hormone‐sensitive lipase and peroxisome proliferator‐activated receptor alpha were significantly decreased. Conclusion: In summary, the optimal replacement level of FM with CGM was shown by curve equation analysis to be 61.30%, and their dosages were 24.52 and 15.48 g/kg, respectively. Impact statementChicken gut meal, a major terrestrial animal protein source that is rich in high levels of proteins and lipids, can be used as a good substitute for fish meal in fish diets. The price of chicken gut meal is much lower than fish meal, reducing costs. Also, the reduction of fish meal use can restore the diversity and stability of marine fish stocks. Therefore, the use of chicken meal is important for people's health and well‐being as well as the sustainable development of marine fisheries. [ABSTRACT FROM AUTHOR]
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- 2023
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13. Phenotypic and Genomic Characteristics of Campylobacter gastrosuis sp. nov. Isolated from the Stomachs of Pigs in Beijing.
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Wang, Hairui, Gu, Yixin, He, Lihua, Sun, Lu, Zhou, Guilan, Chen, Xiaoli, Zhang, Xin, Shao, Zhujun, Zhang, Jianzhong, and Zhang, Maojun
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MOUNTAIN soils ,CAMPYLOBACTER ,CAMPYLOBACTER infections ,PHENOTYPES ,STOMACH ,GENOME size - Abstract
Campylobacter is among the four main causes of gastroenteritis worldwide. Most reported Campylobacter infections are caused by C. jejuni and C. coli. However, other emerging Campylobacter pathogens have been recognized as important pathogens in humans and animals. A novel bacterial strain, PS10
T , was isolated from the gastric mucous of pigs in 2022 in Beijing, China. The cell was Gram-negative, microaerobic, motile, and negative for catalase, oxidase, and urease. Phylogenetic and phylogenomic analyses based on the 16S rRNA gene and core genome indicated that this isolate belongs to the genus Campylobacter. There were low dDDH relatedness and ANI values shared within this strain and its closest species C. mucosalis below the cut-off values generally recognized for isolates of the same species. The draft genome size of PS10T is 2,240,910 bp in length with a percentage of DNA G+C contents of 37.72%. Comparing the phenotypic and phylogenetic features among this isolate and its related organisms, strain PS10T represents a novel species within the genus Campylobacter, for which the name Campylobacter gastrosuis sp. nov. (Type strain PS10T = GDMCC 1.3686T = JCM 35849T ) is proposed. [ABSTRACT FROM AUTHOR]- Published
- 2023
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14. Transmitted Sayings and Their Transmissibility: Patterns and Meanings of Zhuan yue 傳曰 Quotations in Early Chinese Texts.
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Gu, Yixin
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QUOTATIONS , *CANON (Literature) , *LITERARY criticism , *PATTERNMAKING , *LIBRARY storage centers - Abstract
This article investigates the introductory formula zhuan yue 傳曰 ("a transmitted source says") in early China, together with its "quotations" and their parallel texts. Rarely found in pre-imperial texts, the zhuan yue formula gained prominence especially from the mid-Western Han onward. As a vague, unspecific gesture of reference, the formula was flexibly applied to varying functions but also used with limited patterns and regularity. Both the formula and the quoted material are almost never found in the core texts of the "Five Classics" (wujing 五經); instead, zhuan yue appears to indicate sources that existed as an open repository outside of the emerging canon. Thus, in marking the non-canonical body, zhuan yue also helped define the canonical one. Finally, another usage of zhuan yue —which emerged in early Han times if not earlier—as an introduction to specific zhuan -commentaries of the classics is clearly a separate function altogether. [ABSTRACT FROM AUTHOR]
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- 2023
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15. Isolation and Genomic Characteristics of Cat-Borne Campylobacter felis sp. nov. and Sheep-Borne Campylobacter ovis sp. nov.
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Wang, Hairui, Li, Ying, Gu, Yixin, Zhou, Guilan, Chen, Xiaoli, Zhang, Xin, Shao, Zhujun, Zhang, Jianzhong, and Zhang, Maojun
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CAMPYLOBACTER ,FELIS ,ELECTRON microscopy ,GENOTYPES ,UREASE - Abstract
Nine novel bacterial strains were isolated from the feces of cats and sheep in 2019 and 2020 in Beijing, China. Cells were 1–3 μm long and ≤0.5 μm wide, Gram-stain negative, microaerobic, motile, oxidase positive, and urease negative. Phylogenetic analyses based on 16S rRNA gene sequences indicated that these nine isolates belong to the genus Campylobacter but formed two robust clades that were clearly separate from the currently recognized species and, respectively, isolated from the cat and sheep. Both these strains shared low 16S rRNA gene sequence similarity, dDDH relatedness, and ANI values with their closest species C. upsaliensis CCUG 14913
T and C. lanienae NCTC 13004T , and against each other, which are below the cut-off values generally recognized for isolates of the same species. The genomic DNA G + C contents of type strains XJK22-1T and SYS25-1T were 34.99 mol% and 32.43 mol%, respectively. Electron microscopy showed that these cells were spiral shaped, with bipolar single flagella. Based on results from genotypic, phenotypic, phylogenetic, and phylogenomic analyses, these nine strains represent two novel species within the genus Campylobacter, for which the names Campylobacter felis sp. nov. (Type strain XJK22-1T = GDMCC 1.3684T = JCM 35847T ) and Campylobacter ovis sp. nov. (Type strain SYS25-1T = GDMCC 1.3685T ) are proposed. [ABSTRACT FROM AUTHOR]- Published
- 2023
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16. Dietary Cinnamaldehyde Enhances Growth Performance, Digestion, Immunity, and Lipid Metabolism in Juvenile Fat Greenling (Hexagrammos otakii).
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Gu, Yixin, Han, Jian, Wang, Wenjie, Zhan, Yu, Wang, Huijie, Hua, Wenyuan, Liu, Yue, Guo, Yafeng, Xue, Zhuang, and Wang, Wei
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LIPID metabolism , *FATTY acid synthases , *PEROXISOME proliferator-activated receptors , *MUSCLE proteins , *ACID phosphatase , *ACETYL-CoA carboxylase , *ALBUMINS , *DIGESTIVE enzymes - Abstract
Fat greenling (Hexagrammos otakii) is a kind of economic fish that is widely consumed by human, and its intensive farming technology is making important progress. However, high-density farming may cause the occurrence of diseases in H. otakii. Cinnamaldehyde (CNE) is a new feed additive for aquatic animals and has a positive effect on disease resistance. In the study, dietary CNE was evaluated on the growth performance, digestion, immune response, and lipid metabolism of juvenile H. otakii (6.21 ± 0.19 g). Six experimental diets were formulated containing CNE at levels of 0, 200, 400, 600, 800, and 1000 mg/kg for 8 weeks. The percent weight gain (PWG), specific growth rate (SGR), survival (SR), and feeding rate (FR) were significantly increased by including CNE in fish diets regardless of the inclusion level (P < 0.05). The feed conversion ratio (FCR) was significantly decreased among the groups fed CNE supplemented diets (P < 0.05). A significant decrease in hepatosomatic index (HSI) was observed in fish fed 400 mg/kg-1000 mg/kg CNE compared to the control diet (P < 0.05). Fish-fed diets containing 400 mg/kg and 600 mg/kg CNE had a higher level of crude protein in muscles than the control diet (P < 0.05). Moreover, the activities of lipase (LPS) and pepsin (PEP) in the intestinal were markedly increased in juvenile H. otakii-fed dietary CNE (P < 0.05). Apparent digestibility coefficient (ADC) of dry matter, protein, and lipid was significantly increased with CNE supplement (P < 0.05). The activities of catalase (CAT) and acid phosphatase (ACP) in the liver were markedly enhanced by including CNE in juvenile H. otakii diets compared with the control (P < 0.05). The activities of superoxide dismutase (SOD) and alkaline phosphatase (AKP) in the liver were markedly enhanced in juvenile H. otakii treated with CNE supplements 400 mg/kg-1000 mg/kg (P < 0.05). Additionally, the levels of total protein (TP) in the serum were markedly increased by including CNE in juvenile H. otakii diets compared with the control (P < 0.05). In the CNE200, CNE400, and CNE600 groups, albumin (ALB) levels in the serum were markedly higher compared with that in the control (P < 0.05). In the CNE200 and CNE400 groups, the levels of immunoglobulin G (IgG) in the serum were significantly increased compared with that the control group (P < 0.05). The juvenile H. otakii-fed dietary CNE had lower triglycerides (TG) and total cholesterol (TCHO) levels in the serum than fish-fed CNE-free diets (P < 0.05). The gene expression of peroxisome proliferator-activated receptor alpha (PPAR-α), hormone-sensitive lipase (HSL), and carnitine O-palmitoyltransferase 1 (CPT1) in the liver was significantly increased by including CNE in fish diets regardless of the inclusion level (P < 0.05). However, fatty acid synthase (FAS), peroxisome proliferator-activated receptor gamma (PPAR-γ), and acetyl-CoA carboxylase alpha (ACCα) in the liver were markedly decreased with CNE supplements 400 mg/kg-1000 mg/kg (P < 0.05). The glucose-6-phosphate1-dehydrogenase (G6PD) gene expression levels in the liver were markedly decreased compared with the control (P < 0.05). The optimal supplementation level of CNE was shown by curve equation analysis to be 590.90 mg/kg. [ABSTRACT FROM AUTHOR]
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- 2022
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17. Primary Antibiotic Resistance of Helicobacter pylori Isolated from Beijing Children
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Liu, Guodong, Xu, Xiwei, He, Lihua, Ding, Zhaolu, Gu, Yixin, Zhang, Jianzhong, and Zhou, Liya
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- 2011
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18. Molecular typing and antimicrobial susceptibility profiles of Campylobacter jejuni isolates from north China
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Zhang, Maojun, Gu, Yixin, He, Lihua, Ran, Lu, Xia, Shengli, Han, Xiaosheng, Li, Hongxing, Zhou, Haijian, Cui, Zhigang, and Zhang, Jianzhong
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- 2010
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19. Integral reinforcement learning‐based approximate minimum time‐energy path planning in an unknown environment.
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He, Chenyuan, Wan, Yan, Gu, Yixin, and Lewis, Frank L.
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REINFORCEMENT learning ,PONTRYAGIN'S minimum principle ,INTEGRALS - Abstract
Summary: Path planning is a fundamental and critical task in many robotic applications. For energy‐constrained robot platforms, path planning solutions are desired with minimum time arrivals and minimal energy consumption. Uncertain environments, such as wind conditions, pose challenges to the design of effective minimum time‐energy path planning solutions. In this article, we develop a minimum time‐energy path planning solution in continuous state and control input spaces using integral reinforcement learning (IRL). To provide a baseline solution for the performance evaluation of the proposed solution, we first develop a theoretical analysis for the minimum time‐energy path planning problem in a known environment using the Pontryagin's minimum principle. We then provide an online adaptive solution in an unknown environment using IRL. This is done through transforming the minimum time‐energy problem to an approximate minimum time‐energy problem and then developing an IRL‐based optimal control strategy. Convergence of the IRL‐based optimal control strategy is proven. Simulation studies are developed to compare the theoretical analysis and the proposed IRL‐based algorithm. [ABSTRACT FROM AUTHOR]
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- 2021
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20. A Tunable Transmission Line With Controllable Phase Shifting and Characteristic Impedance.
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Ren, Han, Zhou, Mi, Gu, Yixin, and Arigong, Bayaner
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Tunable transmission lines have a high demand in the 5G wireless communication applications. In this brief, a novel transmission line is presented to control both electrical length and characteristic impedance individually, creating flexible functions. For the first function, the proposed transmission line can perform as a tunable phase shifter with 90° phase tuning range and a low insertion loss variation. For the second function, the proposed transmission line can tune the characteristic impedance from 23 Ω to 145 Ω with a fixed phase delay. The ABCD-matrix method is applied to derive the design equations. For the practical implementation, the varactor equivalent parasitic resistances are considered, and the even-odd mode is applied to re-optimize the proposed two tuning functions. To verify the design theory, an experimental prototype is simulated, fabricated, and measured. Both simulation and measurement results match well with the design theory. [ABSTRACT FROM AUTHOR]
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- 2020
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21. Laboratory Study on the Gastroenteritis Outbreak Caused by a Multidrug-Resistant Campylobacter coli in China.
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Li, Ying, Gu, Yixin, Lv, Jinchang, Liang, Hao, Zhang, Ji, Zhang, Shuang, He, Mu, Wang, Yuanyuan, Ma, Hongmei, French, Nigel, Zhang, Jianzhong, and Zhang, Maojun
- Published
- 2020
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22. Design and implementation of aerial communication using directional antennas: learning control in unknown communication environments.
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Li, Songwei, He, Chenyuan, Liu, Mushuang, Wan, Yan, Gu, Yixin, Xie, Junfei, Fu, Shengli, and Lu, Kejie
- Abstract
To support an increasing number of commercial multi‐unmanned aerial vehicle (UAV) applications, robust UAV‐to‐UAV communication is critical. A promising solution is aerial communication using directional antennas (ACDA), with features like long communication distance, low power consumption, broad bandwidth, and interference rejection. Nevertheless, ACDA requires the automatic alignment of directional antennas, which is not easy to achieve considering the imperfect communication environment unknown in advance and the limited sensing devices onboard due to the constrained payloads and power sources. In this study, the authors design and implement a new ACDA system, including the platform, communication, computing, control, middleware, and interface components. Practical implementation issues for the emergency response application are also considered. The ACDA system features a communication and control co‐design, where the communication quality indicator, received signal strength indicator, serves as the goal function for antenna alignment. The solution also features a reinforcement learning‐based directional antenna control algorithm that learns the unknown communication environment models. The performance of the ACDA system is verified using simulation studies, field tests, and disaster drills. [ABSTRACT FROM AUTHOR]
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- 2019
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23. A Novel 2-D $3\times3$ Nolen Matrix for 2-D Beamforming Applications.
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Ren, Han, Zhang, Hanxiang, Jin, Yuqi, Gu, Yixin, and Arigong, Bayaner
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DIRECTIONAL couplers ,PHASED array antennas ,BEAMFORMING ,TRANSMISSION line matrix methods ,PHASE shifters ,ANTENNA feeds ,ANTENNA arrays - Abstract
In this paper, a 2-D beamforming phased array using a novel 2-D Nolen matrix network is presented. The Nolen matrix is a novel antenna feeding network composed of only couplers with dedicated coupling ratios and phase shifters. It does not require crossover and load termination compared to other networks based on Butler and Blass matrix. To be specific, the closed-form equations are derived first for uniplanar single $3 \times 3$ Nolen matrix, which is composed of three couplers and three phase delay lines. Most importantly, it is found that the proposed Nolen matrix can employ couplers with arbitrary phase differences to achieve relatively flexible progressive phase delays across the radiating elements, presenting a high degree of freedom on circuit topology and beamforming performance. Then, a 2-D antenna feeding network is designed by stacking and cascading six $3 \times 3$ Nolen matrices, and a 2-D patch antenna array is integrated with the proposed feeding network to generate nine radiation beams with unique directions on azimuth and elevation planes, realizing the 2-D beamforming function. To verify the proposed design concept, a prototype of 2-D beamforming phased array operating at 5.8 GHz is designed, fabricated, and measured, and the experimental results agree well with simulation and theoretical analysis. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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24. A prospective study on peptide mapping of human fatigue saliva markers based on magnetic beads.
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Xu, Yanli, Xiao, Di, Zhang, Huifang, He, Lihua, Gu, Yixin, Peng, Xianhui, Gao, Xiaohuan, Liu, Zhijun, and Zhang, Jianzhong
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TIME-of-flight mass spectrometry ,LONGITUDINAL method ,FATIGUE (Physiology) ,MASS spectrometry ,SALIVA - Abstract
In order to explore convenient and stable fatigue markers, we studied various high-molecular-weight peptide fragments under fatigue state and non-fatigue state in the saliva using time of flight mass spectrometry. The saliva samples were collected from 10 healthy volunteers that were in the condition of fatigue and non-fatigue, respectively. Moreover, the time of flight mass spectrometry was conducted using two kinds of sample treatment methods, the magnetic beads enrichment (MB) and direct detection of stock solution. This was followed by modeling via the mass spectra of MB and supernatant (stock solution) directly collected after centrifugation. Both MB and direct sampling produced good spectrograms between 1,000 and 15,000 Da, while some peaks were lost in the enrichment. The spectrograms in the early and late period were different in each individual. Due to the limited sample size, 20 early and 20 late spectrograms were used for modeling analysis. Three different peptides were identified in the stock solution samples that can be detected in both fatigue and non-fatigue groups. The cross validity of MB model was 92.06%, while that of the stock solution model was 95.49%. The results showed that there were different peaks within the molecular weight of 2,000-15,000 Da, which provided a scientific basis for further realization of the convenient fatigue detection method based on the biosensor technique, with important theoretical and practical significance. [ABSTRACT FROM AUTHOR]
- Published
- 2019
25. A Novel Uniplanar Balun With Transparent Termination Impedance.
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Zhou, Mi, Ren, Han, Gu, Yixin, Jin, Yuqi, and Arigong, Bayaner
- Abstract
In this letter, a novel planar branch line balun with transparent port impedance is presented. The balun is designed based on a symmetric four-port network with an open-ended transmission line stub in the middle of the branch at its unbalanced port side. From the even-odd mode analysis, the equivalent network is derived to be a short circuit under even-mode excitation, and the input impedance looking into the unbalanced port satisfies impedance matching under odd-mode excitation. Unlike previous designs, the equivalent cascaded impedance transformer in the proposed structure is independent to the system reference impedance in odd-mode excitation so that the termination at the unbalanced port is transparent to balanced ports. To prove the design concept, the closed-form equations are derived, and multiple prototypes with termination impedances 35, 50, and $75 ~\Omega $ are simulated, fabricated, and characterized. [ABSTRACT FROM AUTHOR]
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- 2019
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26. Long-Range and Broadband Aerial Communication Using Directional Antennas (ACDA): Design and Implementation.
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Chen, Jienan, Xie, Junfei, Gu, Yixin, Li, Songwei, Fu, Shengli, Wan, Yan, and Lu, Kejie
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WIRELESS communications ,VIRTUAL offices ,DRONE aircraft ,ANTENNA design ,GLOBAL Positioning System - Abstract
In this paper, we design and implement a long-range and broadband aerial communication system using directional antennas (ACDA). The system integrates Wi-Fi devices with aerial networks to quickly establish a Wi-Fi infrastructure in the air, which provides real-time communication capability for disasters where a fixed communication infrastructure does not exist. ACDA utilizes unmanned aerial vehicle (UAV)-carried directional antennas to extend communication range, increase throughput, and reduce interference. A GPS-based control algorithm is designed and implemented to automatically reject wind disturbance and align the directions of antennas in accordance with UAV movement. A received signal strength indicator-based decentralized initial scan algorithm is also designed and implemented to quickly establish initial connection between the UAVs. Simulation studies verify the effectiveness of the heading control and initial scan algorithm. Field tests are also conducted to evaluate the performance of overall system in terms of throughput and delay with respect to the increase of communication range. The ACDA prototype system achieves 48 Mb/s throughput at a distance of 300 m and 2 Mb/s at 5000 m, and proves the promising usage of directional antennas for long-distance Wi-Fi aerial communication. Practical use of this on-demand communication system to aid emergency response is also demonstrated through a case study in a real disaster drill. [ABSTRACT FROM AUTHOR]
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- 2017
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27. Genetic Characteristics and Multiple-PCR Development for Capsular Identification of Specific Serotypes of Campylobacter jejuni.
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Liang, Hao, Zhang, Aiyu, Gu, Yixin, You, Yuanhai, Zhang, Jianzhong, and Zhang, Maojun
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CAMPYLOBACTER jejuni ,POLYSACCHARIDES ,SEROTYPES ,MICROBIAL virulence ,CELL membranes ,POLYMERASE chain reaction - Abstract
The polysaccharide capsule (CPS) of Campylobacter jejuni is a virulence factor linked to cell surface carbohydrate diversity which mainly determines the serotypes. Thirty-four CPS gene cluster structures have been published and some of them can be distinguished by multiple-PCR. Penner serotypes HS1/44c, HS2, HS4c, HS19, HS23/36c and HS41 are markers for Guillain—Barré syndrome (GBS). The capsules may contribute to GBS susceptibility. Analysis of 18 CPS loci revealed high gene content diversity and a mosaic nature of the capsule loci, which are possibly due to gene gain/loss events, and demonstrated a high degree of conservation of genes within serotypes/serotype complexes. A method of multiple-PCR was developed to distinguish five specific serotypes and three GBS-related serotypes. Primers specific for each capsule type were designed on the basis of paralogs or a unique DNA region of the CPS locus. The multiple-PCR can distinguish the eight serotypes in two PCRs with sensitivity and specificity of 100% using 227 strains of known Penner type. The multiple-PCR method will help to distinguish serotypes simply and rapidly. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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28. A Zero Phase Delay Power Divider Using Zero Phase Impedance Transformer.
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Zhou, Mi, Gu, Yixin, and Arigong, Bayaner
- Abstract
The 3-dB power divider is one of the most common three-port device in microwave systems, which equally splits the signal at its two output ports. In previous Wilkinson power divider design, the phase delay between the input and output ports is not considered into the design requirements. However, the zero-phase shifting power divider attracts great interest in modern microwave systems. In this letter, a 3-dB power divider with zero-phase delay is designed based on a zero-phase impedance transformer. Instead of metamaterial transmission line, a transmission line stub is added to connect the isolation resistor, and a capacitor is insert between the output ports and the end of main branch to cancel out the imaginary part of even–odd mode impedances. With this new design, it releases the layout restriction that the two branches route around to connect to lumped element resistor. Closed-form design equations are derived and a prototype device is then simulated and measured. The measurement results agree well with the simulation results. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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29. 1001 Questions & Answers
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Gu, Yixin
- Subjects
Questions and answers ,Science and technology - Abstract
1001 Questions & Answers. Helena Spiteri and David Pickering. Dorling Kindersley, 1995. $16.95. (12-18) Basically this is a perfect book for kids at different levels. Although using the simplest way--question [...]
- Published
- 1996
30. The Visual Dictionary of Physics
- Author
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Gu, Yixin
- Subjects
Science and technology - Abstract
The Visual Dictionary of Physics. Jack Challoner. Dorling Kindersley, 1995. $16.95. (14-18) I can't believe this! A colorful photograph book is actually a dictionary with thousands of physics terms. As [...]
- Published
- 1996
31. Prehistoric Journey
- Author
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Gu, Yixin
- Subjects
Prehistoric Journey: A History of Life on Earth (Nonfiction work) -- Michaels, Greg -- Wicker, Rich -- Johnson, Kirk R. -- Stucky, Richard K. ,Books -- Book reviews ,Science and technology - Abstract
Prehistoric Journey. Kirk R. Johnson and Richard K. Stucky. Greg Michaels, illus., Rich Wicker, photography. Roberts Rinehart, 1995. paper $19.95 (12-18) This is a terrific book on the prehistory of [...]
- Published
- 1996
32. Development and Characterization of the Edible Packaging Films Incorporated with Blueberry Pomace.
- Author
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Singh, Anika, Gu, Yixin, Castellarin, Simone D., Kitts, David D., and Pratap-Singh, Anubhav
- Subjects
PACKAGING film ,EDIBLE coatings ,STARCH ,CORNSTARCH ,GREEN bean ,BLUEBERRIES ,POLYETHYLENE films - Abstract
This work focused on the development of starch-based (potato, corn, sweet potato, green bean and tapioca) edible packaging film incorporated with blueberry pomace powder (BPP). The optical, mechanical, thermal, and physicochemical properties were subsequently tested. The film color was not affected by the addition of BPP. BPP incorporated into corn and green bean starch films showed increased light barrier properties, indicating a beneficial effect to prevent UV radiation-induced food deterioration. Film thickness and transparency were not primarily affected by changing the starch type or the BPP concentration, although the corn starch films were the most transparent. Furthermore, all films maintained structural integrity and had a high tensile strength. The water vapor transmission rate of all the films was found to be greater than conventional polyethylene films. The average solubility of all the films made from different starch types was between 24 and 37%, which indicates the usability of these films for packaging, specifically for low to intermediate moisture foods. There were no statistical differences in Differential Scanning Calorimetry parameters with changes in the starch type and pomace levels. Migration assays showed a greater release of the active compounds from BPP into acetic acid medium (aqueous food simulant) than ethanol medium (fatty food simulant). The incorporation of BPP into starch-chitosan films resulted in the improvement of film performance, thereby suggesting the potential for applying BPP into starch-based films for active packaging. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
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33. Smart seat cushion feasibility pilot study: automated interface pressure modulation of individuals with spinal cord Injury.
- Author
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Nasirian, Aida, Erel, Veysel, Nuthi, Pavan, Gu, Yixin, Allman, Melissa, Meza, Faith, Sikka, Seema, and Wijesundara, Muthu B. J.
- Abstract
Abstract\nIMPLICATIONS FOR REHABILITATIONThis study investigates the functionality and feasibility of a novel smart seat cushion system designed for wheelchair users with spinal cord injuries. The cushion, equipped with air cells that serve as both sensors and actuators, was tested on 24 participants for its real-time pressure mapping, automated pressure redistribution, and pressure offloading functions. A commercial pressure mat was concurrently used to validate the cushion’s pressure modulation functions. Additionally, the perceived comfort of the cushion was evaluated using General Discomfort Assessment (GDA) and Discomfort Intensity (DIS) scores, which provided insights into participants’ overall comfort and discomfort levels. Real-time pressure profiles generated by the cushion resembled commercial pressure mat readings. During tests with individuals with spinal cord injury, the cushion was able to dynamically generate and display the real-time pressure profile of a seated individual with strong precision (correlation to commercial pressure mat:
r ranging from 0.76 to 0.88), providing effective input into pressure modulation functions. Pressure redistribution algorithms eliminated peak pressure and reduced the overall pressure at the interface. Pressure offloading algorithms automatically identified the regions with the highest interface pressure and subsequently relieved the pressure from those areas. User feedback showed that the cushion was comfortable after redistribution and offloading. This work demonstrated the feasibility of an advanced smart seat cushion system for wheelchair users with spinal cord injuries. The cushion was capable of redistributing pressure evenly across the seating surface, ensuring user’s comfort. Additionally, it identifies and eliminates high-pressure points, further improving comfort and reducing the risk of pressure injuries.Majority of wheelchair users acquire pressure injuries in their lifetime, where the magnitude and duration of sitting interface pressure are major contributing factors to develop pressure injuries.Compliant cushions and frequent weight shifting can reduce the magnitude and duration of sitting interface pressure; however, the long-term effectiveness of these cushions and the user’s lack of compliance to the weight shifting protocols impact their efficacy drastically.An automated cushion system that can reduce the magnitude of the pressure based on the user’s current pressure profile and offload pressure from vulnerable areas would improve the effectiveness of the cushion and compensate for poor adherence to weight shifting protocols.Automated solutions will significantly improve the quality of care provided to wheelchair users and reduce the risk of developing pressure injuries.Majority of wheelchair users acquire pressure injuries in their lifetime, where the magnitude and duration of sitting interface pressure are major contributing factors to develop pressure injuries.Compliant cushions and frequent weight shifting can reduce the magnitude and duration of sitting interface pressure; however, the long-term effectiveness of these cushions and the user’s lack of compliance to the weight shifting protocols impact their efficacy drastically.An automated cushion system that can reduce the magnitude of the pressure based on the user’s current pressure profile and offload pressure from vulnerable areas would improve the effectiveness of the cushion and compensate for poor adherence to weight shifting protocols.Automated solutions will significantly improve the quality of care provided to wheelchair users and reduce the risk of developing pressure injuries. [ABSTRACT FROM AUTHOR]- Published
- 2024
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34. Cloning, tissue distribution of desert hedgehog (dhh) gene and expression profiling during different developmental stages of Pseudopleuronectes yokohamae.
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Zhang, Zheng, Wang, Wenjie, Wei, Yanchao, Gu, Yixin, Wang, Yue, Li, Xuejie, and Wang, Wei
- Subjects
- *
GENE expression profiling , *MOLECULAR cloning , *IN situ hybridization , *EMBRYOLOGY , *HEDGEHOGS , *SEQUENCE alignment - Abstract
As a crucial member of the Hedgehog (Hh) protein family, desert hedgehog (dhh) plays a vital role in multiple developmental processes, cell differentiation and tissue homeostasis. However, it is unclear how it regulates development in fish. In this study, we cloned and characterized the dhh gene from Pseudopleuronectes yokohamae. The full-length cDNA of Pydhh comprises 3194 bp, with a 1386 bp open reading frame (ORF) that encodes a polypeptide of 461 amino acids with a typical HH-signal domain, Hint-N and Hint-C domains. Multiple sequence alignment revealed that the putative Py DHH protein sequence was highly conserved across species, especially in the typical domains. Phylogenetic analysis showed that the Py DHH clustered within the Pleuronectiformes. Real-time quantitative PCR showed that Pydhh was detected in fourteen different tissues in adult-female and adult-male marbled flounder, and nine different tissues in juvenile fish. During early embryonic development stages, the expression of Pydhh was revealed high levels at hatching stage of embryo development. Moreover, the relative expression of Pydhh was significantly higher in the juvenile liver than adults', and higher in the female skin than the male skin. To further investigate its location, the in situ hybridization (ISH) assay was performed, the results showed that the hybridization signal was obviously expressed in the immune organs of Pseudopleuronectes yokohamae , with weak signal expression in the other tissues. Our results suggested that Pydhh is highly conserved among species and plays a vital role in embryonic development and formation of immune related organs. • The full-length dhh gene (Pydhh) was cloned from Pseudopleuronectes yokohamae. • Pydhh gene exhibited various distributions among tissues. • Pydhh gene exhibited gender differential expression. • The Py DHH protein was detected under different developmental stages. • The Pydhh gene was mainly located in the immune organs of Pseudopleuronectes yokohamae. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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35. Development of Cyclic Pressure Offloading Insole for Diabetic Foot Ulcer Prevention.
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Erel V, Nasirian A, Gu Y, Lavery L, and Wijesundara MBJ
- Abstract
Introduction. The likelihood of developing a diabetic foot ulcer (DFU) during one's lifetime for individuals with diabetes mellitus is around 19% to 34%. Continuous and repetitive loading on soft tissues are the major causative factors for DFU. This paper introduces an air cell array insole designed for cyclically offloading pressure from plantar regions to reduce repetitive stress and loading on foot. Materials and Methods. The insole comprises an air cell array insole and a pneumatic control unit. The interface pressure was evaluated in static and dynamic conditions at 3 different air cell internal pressures (6.9, 10.3, and 13.8 kPa). Plantar interface pressure was measured using a commercial pressure system, and data were analyzed using paired t test. Average interface pressure and peak pressure (PP) were studied to evaluate the functionality and effectiveness of the insole. Results. The analysis of static pressure data revealed that cyclic offloading significantly ( p < .05) reduced PP in 4 tested cells corresponding to big toe, metatarsal heads, and heel areas with the maximum mean difference of 12.9 kPa observed in big toe region. Similarly, dynamic pressure data analysis showed that cyclic offloading significantly ( p < .05) reduced PP in these areas, with the highest mean PP reduction of 36.98 kPa in the big toe region. Discussion. Results show the insole's capability to reduce plantar pressure through cyclic offloading. Internal pressure of air cells significantly affects the overall pressure reduction and must be chosen based on the user's weight. Conclusion. Results confirm that the insole with offloading capabilities has the potential to reduce the risk of developing DFUs by alleviating the plantar stress during both static and dynamic conditions., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
- Published
- 2024
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36. Genomic diversity and taxonomic marker for Arcobacter species.
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Zhou G, Gu Y, Wang H, Chen X, Zhang X, Shao Z, Yan X, Zhang J, and Zhang M
- Abstract
Arcobacter was recognized as an emerging enteropathogen and controversies regarding its classification persisted. This study aimed to reevaluate the taxonomy of Arcobacter utilizing the 16S rRNA gene, 23S rRNA gene, single-copy orthologous genes, as well as genomic indices such as Average Nucleotide Identity (ANI) and in silico DNA-DNA hybridization ( isDDH ). The taxonomy of this genus was reevaluated in this study using multiple indices with a dataset of 371 genomes comprising 34 known species and 14 potentially new species. Good discrimination could be achieved only in some species but not for the species with higher sequence similarity using the comparisons of the 16S rRNA gene and 23S rRNA gene sequences. A high-accuracy phylogenomic approach for Arcobacter was established using 84 single-copy orthologous genes obtained through various bioinformatics methods. One marker gene (gene711), which was found to possess the same distinguishing ability as ANI, isDDH, and single-copy orthologous methods, was identified as a reliable locus for inferring the phylogeny of the genus. The effective species classification was achieved by employing gene711 with a sequence similarity exceeding 96%, even for species like A. cloacae , A. lanthieri , and A. skirrowii , which exhibited ambiguous classification using ANI and isDDH . Additionally, excellent subspecies categorizing among A. cryaerophilus could be distinguished using gene711. In conclusion, this framework strategy had the potential advantage of developing rapid species identification, particularly for highly variable species, providing a novel insight into the behavior and characteristics of Arcobacter ., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Zhou, Gu, Wang, Chen, Zhang, Shao, Yan, Zhang and Zhang.)
- Published
- 2023
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37. Helicobacter zhangjianzhongii sp. nov., isolated from dog feces.
- Author
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Wang H, Gu Y, Zhou G, Chen X, Zhang X, Shao Z, and Zhang M
- Abstract
In 2019, two distinct bacterial isolates were independently isolated from the fecal samples of separate dogs in Beijing, China. These cells exhibit microaerobic, are Gram-negative, motile, and possess a characteristic spiral shape with bipolar single flagellum. They display positive results for the oxidase test while being negative for both catalase and urease. These organisms measure approximately 0.2-0.3 μm in width and 4.5-6 μm in length. The colonies are wet, flat, grey, circular, and smooth with sizes ranging from 1 to 2 mm in diameter after 2 days of growth. However, strains may exhibit variations in size and morphology following extended incubation. Phylogenetic analyses based on the 16S rRNA gene and core genome indicated that these two isolates belong to the genus Helicobacter and formed a robust clade that was remains distinctly separate from currently recognized species. These two isolates shared low dDDH relatedness and ANI values with their closest species Helicobacter canis CCUG 32756
T , with these values falling below the commonly cutoff values for strains of the same species. The genomic DNA G + C contents of strain XJK30-2 were 44.93 mol%. Comparing the phenotypic and phylogenetic features between these two isolates and their closely related species, XJK30-2 represents a novel species within the genus Helicobacter , for which the name Helicobacter zhangjianzhongii sp. nov. (Type strain XJK30-2T = GDMCC 1.3695T ) is proposed., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Wang, Gu, Zhou, Chen, Zhang, Shao and Zhang.)- Published
- 2023
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38. Dietary artemisinin boosts intestinal immunity and healthy in fat greenling ( Hexagrammos otakii ).
- Author
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Gu Y, Wang W, Zhan Y, Wei X, Shi Y, Cui D, Peng T, Han J, Li X, Chen Y, Xue Z, and Wang W
- Subjects
- Animals, Vascular Endothelial Growth Factor A, Transcription Factor RelA, Molecular Docking Simulation, Dietary Supplements, Diet, Intestines, Perciformes, Artemisinins pharmacology
- Abstract
Introduction: Artemisinin (ART) is very common as a diet additive due to its immunoregulatory activities. Nonetheless, the immunoregulatory mechanism of ART in marine fish remains unknown. This study comprehensively examined the effects and explored the potential mechanism of ART ameliorating intestinal immune disease (IID) in fat greenlings (Hexagrammos otakii) ., Methods and Results: The targets of ART were screened using the Traditional Chinese Medicine Systems Pharmacology (TCMSP) database. Here, eight putative targets of ART were collected and identified with the Uniprot database, and 1419 IID-associated target proteins were filtered through the Drugbank, Genecards, OMIM, and PHARMGKB Databases. The results of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways point out that ART may have immunoprotective effects by regulating cellular responses to stress, hypoxia, inflammation, and vascular endothelial growth factor stimulus through the hypoxia-inducible factor 1 (HIF-1) signaling pathway. The findings of molecular docking indicated that ART contains one active ingredient and three cross-targets, which showed a kind combination with hypoxia-inducible factor 1-alpha (HIF1-a), transcription factor p65 (RELA), and vascular endothelial growth factor A (VEGF-A), respectively. Furthermore, an ART feeding model was established to assess the ART's immunoprotect effect on the intestine of H.otakii in vivo . The D48 group showed smaller intestinal structural changes after being challenged by Edwardsiella tarda . The supplementation of ART to the diet improved total superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidase (GSH-Px) and reduced the malondialdehyde (MDA) in intestine of H. otakii . The expression of transcription factor p65, HIF1-α, VEGF-A, cyclin D1, matrix metalloprotease 9 (MMP9), monocyte chemoattractant protein-1 (MCP-1), tumor necrosis factor-alpha (TNF-α), and interleukin-6 (IL-6) was decreased after dietary ART in the intestinal of H. otakii ., Discussion: The present results demonstrated that dietary ART improved antioxidants and immunity, optimized the intestinal structure, and increased resistance to E. tarda through the SOD2/nuclear-factor-kappa- B (NFkB)/HIF1-a/VEGF-A pathway in the intestinal tract of H.otakii . This study integrated pharmacological analysis and experimental validation and revealed the mechanism of ART on IID, which provides insight into the improvement of IID in H. otakii ., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Gu, Wang, Zhan, Wei, Shi, Cui, Peng, Han, Li, Chen, Xue and Wang.)
- Published
- 2023
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- View/download PDF
39. Genetic characteristics and potential pathogenic agents in Campylobacter upsaliensis based on genomic analysis.
- Author
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Wang H, Gu Y, Ju C, Li Y, Chen X, Zhou G, Zhang X, Liu C, Chen J, Han Y, Zhang J, Shao Z, and Zhang M
- Subjects
- Humans, Genomics, China, Campylobacter upsaliensis genetics, Campylobacter Infections veterinary, Campylobacter
- Abstract
Campylobacter upsaliensis was the most common Campylobacter species in pets' gastrointestinal tracts and has been isolated from patients with bacteremia, hemolytic-uremic syndrome, spontaneous abortion, and Guillain-Barré syndrome. However, the genetic characteristics and the full extent of its significance as a human pathogen remain to be fully understood. This study involved an investigation for genomic analysis of 154 strains from different sources and additional antimicrobial resistance profiles of 26 strains for this species. The genomes contained 1,558-1,971 CDS and the genome sizes were estimated to vary from 1.53 Mb to 1.86 Mb, with an average GC content of 34.71%. The entire analyzed genomes could be divided into three clades (A, B, and C) based on ANI and phylogenomic analysis. Significantly, nearly all strains in Clade B were isolated from patient samples, and the virulence-related sequences FlgD, GmhA, and CdtC might serve as determining factors for the classification of Clade B. Half of the tested isolates had MIC values over 64 μg mL
-1 for nalidixic acid, gentamicin, and streptomycin. Isolates from pets in China carried more resistant elements in the genomes. This study both provided a comprehensive profile of C. upsaliensis for its genomic features and suggested some pathogenic agents for human infection with this species.- Published
- 2024
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40. Species classification and novel plasmid identifications in Arcobacter cryaerophilus and Arcobacter cryaerophilus-like organisms.
- Author
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Zhou G, Wang M, Wang H, Chen X, Gu Y, Shao Z, Zhang J, and Zhang M
- Abstract
The Arcobacter is a globally emerging foodborne and zoonotic pathogen that can cause diarrhea in humans. It is relatively homogenous and clearly distinguishes the group from other Epsilonproteobacteria . Arcobacter cryaerophilus ( A. cryaerophilus ) is a heterogeneous species and little is known about its genomic characterization in China. This study aims to determine the genetic and plasmid features of A. cryaerophilus based on whole-genome sequence (WGS). Average Nucleotide Identity (ANI) and in silico DNA-DNA hybridization ( is DDH) were used for the species classification for 90 initially identified A. cryaerophilus strains. One complete genome and 42 draft genomes were obtained by whole genome sequencing. The genomic characteristics were determined using various bioinformatics software. The genomes of the strains examined were estimated to vary from 1.81 to 2.28 Mb in length, with a G + C content of around 27%. ANI and is DDH results indicated that 90 initially identified A. cryaerophilus strains should be reclassified into four new species (ANI > 96% or is DDH > 70%). Two clades (four subclades) were identified among 90 genomes with the phylogenetic analysis. The phylogenetic tree indicated these 90 genomes exhibited a high intra-species genomic diversity. No clustering was assorted with the host or geographic location among these genomes. Aminoglycoside resistance genes, such as aph(2'')-Ih , AAC(6')-Ie-APH(2'')-Ia , aac(6')-IIa , ant(6) , and streptothricin resistance gene SAT-4 were detected in the chromosomes from a third of the Chinese strains. Virulence-related genes were identified in all the sequenced strains. A novel large multiple drug-resistant plasmid (named pCNAC48 with 161,992 bp in length) was identified in strain ICDCAC48. Two antibiotic-resistance islands were found in the plasmid with lengths of 7,950 and 25,137 bp and G + C content of 38.23 and 32.39%, respectively. The drug resistance genes and some transposable elements were cross-distributed among the islands in the plasmid. Antimicrobial susceptibility tests indicated these resistance genes in the plasmid were functional. Plasmid conjugation and curing experiments proved pCNAC48 was stable in strain ICDCAC48. It was the first identified multiple drug resistance plasmid in A. cryaerophilus-like ., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Zhou, Wang, Wang, Chen, Gu, Shao, Zhang and Zhang.)
- Published
- 2022
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41. Gastroenteritis Outbreak Caused by Campylobacter jejuni - Beijing, China, August, 2019.
- Author
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Li Y, Zhou G, Gao P, Gu Y, Wang H, Zhang S, Zhang Y, Wang Y, Jing H, He C, Zhen G, Ma H, Li Y, Zhang J, and Zhang M
- Abstract
What is already known about this topic?, Campylobacter genus bacteria are recognized as some of the leading causes of the bacterial diarrheal illness in both developing and developed countries. Recent pilot surveillance study revealed Campylobacter is the most common pathogen in the diarrheal cases using the enhanced filtration methods in Beijing. One outbreak caused by multi-drug resistant Campylobacter coli ( C. coli ) was identified in 2018., What is added by this report?, This is the first identified gastroenteritis outbreak caused by local Campylobacter jejuni ( C . jejuni ) infection in Beijing. A total of 14 patients were identified from August 23 to 26, 2019. The epidemiological investigation indicated that all of the patients worked at the same factory and the diarrhea happened after the same meal supplied from one company which service the meal delivery. Fourteen C. jejuni isolates were obtained from 12 patients and 2 food workers. Whole Genome Sequencing (WGS) analysis indicated this outbreak was caused by one highly clonal C. jejuni ., What are the implications for public health practice?, Campylobacter is the major foodborne pathogen in the world. Surveillance and risk assessment for Campylobacter infection particularly for Guillain-Barré Syndrome (GBS) associated C. jejuni infection in China should closely monitored., (Copyright and License information: Editorial Office of CCDCW, Chinese Center for Disease Control and Prevention 2020.)
- Published
- 2020
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42. Comparison of the Filtration Culture and Multiple Real-Time PCR Examination for Campylobacter spp. From Stool Specimens in Diarrheal Patients.
- Author
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Liang H, Wen Z, Li Y, Duan Y, Gu Y, and Zhang M
- Abstract
Campylobacter is one of the most common pathogens leading to the bacterial diarrheal illness. In order to set up one effective culture independent assay for the screen of the Campylobacter infection in the diarrheal patients, the quadruple real-time PCR method comparing to the culture based on the enriched filtration method which was recognized as the most effective isolation method was assessed for 190 stool samples from the diarrheal patients collected during the Foodborne Diseases Active Surveillance Network in Beijing. This multiple real-time PCR was designed to identify the Campylobacter genus, C. jejuni, C. coli , and C. lari simultaneously. With the enrichment culture method, 23 (12.1%, 23/190) Campylobacter isolates were obtained (20 C. jejuni and 3 C. coli ), however, 31 samples (16.3%, 31/190) were detected positively with the real-time PCR (21 C. jejuni , 8 C. coli , and 2 Campylobacter genus only). With the comparison, the real-time-PCR method is more sensitive than the enrichment filtration method (16.3 vs. 12.1%, p = 0.021). Among the culture-positive samples, 95.7% (22/23) were detected positively by PCR which indicate the specificity of this method was higher. These two methods were consistent well (Kappa = 0.785, p < 0.05). Comparing to the culture methods, the result of the multiple real-time PCR method is sensitive, reliable and rapid. The present study indicated this multiple real-time PCR can be used both for the surveillance network and the preceding screen for bacteria isolation. This is first comparative study between the culture and multiple real-time PCR method for Campylobacter identification in stool specimens from the diarrheal patients.
- Published
- 2018
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43. Gastric Juice-Based Real-Time PCR for Tailored Helicobacter Pylori Treatment: A Practical Approach.
- Author
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Peng X, Song Z, He L, Lin S, Gong Y, Sun L, Zhao F, Gu Y, You Y, Zhou L, and Zhang J
- Subjects
- Adult, Aged, Amoxicillin therapeutic use, Clarithromycin therapeutic use, Drug Resistance, Bacterial genetics, Female, Genotype, Helicobacter Infections diagnosis, Helicobacter Infections microbiology, Helicobacter pylori genetics, Helicobacter pylori pathogenicity, Humans, Male, Middle Aged, Proton Pump Inhibitors therapeutic use, Real-Time Polymerase Chain Reaction, Cytochrome P-450 CYP2C19 genetics, Gastric Juice, Helicobacter Infections drug therapy, Helicobacter pylori drug effects
- Abstract
A gastric juice-based real-time polymerase chain reaction (PCR) assay was established to identify Helicobacter pylori infection, clarithromycin susceptibility and human CYP2C19 genotypes and to guide the choice of proton pump inhibitor (PPI), clarithromycin and amoxicillin treatment for tailored H. pylori eradication therapy. From January 2013 to November 2014, 178 consecutive dyspeptic patients were enrolled for collection of gastric biopsy samples and gastric juice by endoscopy at the Peking University Third Hospital; 105 and 73 H. pylori -positive and -negative patients, respectively, were included in this study. H. pylori infection was defined as samples with both a strongly positive rapid urease test (RUT) and positive H. pylori histology. A series of primers and probes were distributed into four reactions for identifying the H. pylori cagH gene coupled with an internal control ( Rnase P gene), A2142G and A2143G mutants of the H. pylori 23S rRNA gene, and single-nucleotide polymorphisms (SNPs) G681A of CYP2C19*2 and G636A of CYP2C19*3 . The E-test and DNA sequencing were used to evaluate the H. pylori clarithromycin susceptibility phenotype and genotype. The SNPs CYP2C19*2 and CYP2C19*3 were also evaluated by nucleotide sequencing. The sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of this gastric juice-based real-time PCR assay were evaluated by comparing with the same measures obtained through gastric biopsy-based PCR and culture. The H. pylori diagnostic sensitivities of the culture, PCR, and gastric biopsy- and gastric juice-based real-time PCR assays were 90.48% (95/105), 92.38% (97/105), 97.14% (102/105) and 100% (105/105), respectively; the specificities of the above methods were all 100%. Higher false-negative rates were found among the gastric biopsy samples assessed by culture (10.48%, 11/105), PCR (7.62%, 8/105) and real-time PCR (2.86%, 3/105) than in gastric juice by real-time PCR. Regarding clarithromycin susceptibility, a concordance of 82.98% (78/94) and discordance of 17.02% (16/94) were observed among the different methods, discrepancies that mainly represent differences between the H. pylori clarithromycin susceptibility phenotype and genotype. Three coinfections of susceptible and resistant strains were detected, with resistant-to-susceptible ratios of 1.16, 3.44, and 8.26. The CYP2C19 genotyping results from gastric juice by real-time PCR were completely in accordance with those obtained from biopsy samples by conventional PCR. This gastric juice-based real-time PCR assay is a more accurate method for detecting H. pylori infection, clarithromycin susceptibility and CYP2C19 polymorphisms. The method may be employed to inform the choice of proton pump inhibitor (PPI), clarithromycin and amoxicillin treatment for tailored H. pylori eradication therapy., Competing Interests: Competing Interests: The authors have declared that no competing interest exists.
- Published
- 2017
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44. Molecular subtyping and antimicrobial susceptibilities of Campylobacter coli isolates from diarrheal patients and food-producing animals in China.
- Author
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Zhang M, Liu X, Xu X, Gu Y, Tao X, Yang X, Yan G, and Zhang J
- Subjects
- Alleles, Animals, Anti-Bacterial Agents pharmacology, Bacterial Proteins genetics, Bacterial Proteins metabolism, Bacterial Typing Techniques, Campylobacter coli classification, Campylobacter coli drug effects, Chickens microbiology, China, Cloning, Molecular, Cluster Analysis, Diarrhea microbiology, Electrophoresis, Gel, Pulsed-Field, Flagellin genetics, Flagellin metabolism, Genetic Loci, Humans, Microbial Sensitivity Tests, Swine, Campylobacter coli isolation & purification, Drug Resistance, Multiple, Bacterial, Meat microbiology, Multilocus Sequence Typing methods
- Abstract
The aim of this study was to determine the molecular subtyping and antimicrobial susceptibility characteristics of Campylobacter coli isolates from different sources in China. One hundred thirteen C. coli isolates were subtyped by pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), and porA and flaA short variable region (SVR) nucleotide sequences. Cluster analysis was performed based on the PFGE and sequence types (ST). Eighty-four PFGE patterns (SmaI) were observed in 113 isolates. Fifty-four STs (28 novel) and three clonal complexes (CC), 86% of which were clustered to CC828, were observed, as well as 52 porA and 37 flaA-SVR sequence alleles. MLST, porA, and flaA-SVR analysis demonstrated that many isolates from diarrheal patients shared identical genotypes with chicken isolates. Minimum inhibitory concentration values of 10 antibiotics were analyzed for 109 isolates isolated in 2011 using the E-test method. The most frequently observed resistance agents were nalidixic acid (100%) and ciprofloxacin (100%), followed by levofloxacin (99%), tetracycline (94%), metronidazole (93%), erythromycin (61%), streptomycin (72%), gentamicin (59%), ampicillin (50%), and chloramphenicol (29%). Multidrug resistance was detected in 108 of 109 C. coli isolates (99%).
- Published
- 2014
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45. Genome Sequences of the Guillain-Barre Syndrome Outbreak-Associated Campylobacter jejuni Strains ICDCCJ07002 and ICDCCJ07004.
- Author
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Zhang M, Yang X, Liu H, Liu X, Huang Y, He L, Gu Y, and Zhang J
- Abstract
The first world-known and largest outbreak of 36 cases of Guillain-Barré syndrome caused by a preceding Campylobacter jejuni infection was reported previously in China. During the outbreak, Campylobacter jejuni strain ICDCCJ07002 was isolated from a patient with persistent diarrhea for 21 days, and C. jejuni strain ICDCCJ07004 was from a healthy carrier without any clinical symptoms at the same time. Here, we report the draft genome sequence of strain ICDCCJ07002 (1,698,407 bp, with a G+C content of 30.45%) and the genome resequencing result of strain ICDCCJ07004 (1,701,584 bp, with a G+C content of 30.51%), and we compared these with the completed genome of C. jejuni strain ICDCCJ07001.
- Published
- 2013
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46. Detection of Mycoplasma pneumoniae by colorimetric loop-mediated isothermal amplification.
- Author
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Zhao F, Liu Z, Gu Y, Yang Y, Xiao D, Tao X, Meng F, He L, and Zhang J
- Subjects
- Humans, Mycoplasma pneumoniae genetics, Sensitivity and Specificity, Colorimetry methods, Mycoplasma pneumoniae isolation & purification, Nucleic Acid Amplification Techniques methods
- Abstract
Mycoplasma pneumoniae (M. pneumoniae) is one of the most important pathogens that cause respiratory tract infection in children and adults. In this study, we describe a rapid and sensitive colorimetric loop mediated isothermal amplification (LAMP) method to detect M. pneumoniae. The specificity and sensitivity of this assay were detected with 21 common respiratory pathogens and 39 M. pneumoniae DNA. The sensitivity of LAMP was 100% among 39 M. pneumoniae isolates and the specificity was 100% among 9 members of other Mycoplasma and 12 common respiratory pathogens. The lowest detectable limit (LDL) of this assay was 102 copies, which detected by a series of standard M. pneumoniae DNA. To evaluate the clinical applicability of the LAMP assay, a total of 80 clinical samples were examined by conventional PCR, real-time PCR and the LAMP assays, respectively. The positive rates were 15.0%, 32.5% and 26.3%, respectively. This colorimetric LAMP assay demonstrated a high level of sensitivity comparable with that of conventional PCR for the detection of M. pneumoniae. It is a valuable method for simple, cost-effective and rapid detection of M. pneumoniae in the rural areas and basic clinical of China.
- Published
- 2013
- Full Text
- View/download PDF
47. Multiple-locus variable-number tandem-repeat analysis of 201 Mycoplasma pneumoniae isolates from Beijing, China, from 2008 to 2011.
- Author
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Zhao F, Liu G, Cao B, Wu J, Gu Y, He L, Meng F, Zhu L, Yin Y, Lv M, and Zhang J
- Subjects
- China, Cluster Analysis, Genes, Bacterial, Genotype, Humans, RNA, Ribosomal, 23S, Minisatellite Repeats genetics, Multilocus Sequence Typing, Mycoplasma pneumoniae classification, Mycoplasma pneumoniae genetics, Pneumonia, Mycoplasma microbiology
- Abstract
A total of 201 Mycoplasma pneumoniae clinical isolates from Beijing, China, isolated from 2008 to 2011, were clustered into 16 multiple-locus variable-number tandem-repeat analysis (MLVA) types, of which 6 new MLVA types have never been reported previously. Type 1 isolates based on p1 gene genotyping were mainly MLVA types E, J, P, U, and X. There was no correlation between macrolide-resistant Mycoplasma pneumoniae and their MLVA type.
- Published
- 2013
- Full Text
- View/download PDF
48. Cloning, expression, and antigenicity of 14 proteins from Campylobacter jejuni.
- Author
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Zhang M, Meng F, Cao F, Qiao B, Liu G, Liu H, Zhou Y, Dong H, Gu Y, Xiao D, Zhang Y, and Zhang J
- Subjects
- Amino Acid Sequence, Animals, Antigens, Bacterial genetics, Blotting, Western, Campylobacter Infections diagnosis, Campylobacter Infections genetics, Campylobacter Infections immunology, Campylobacter jejuni immunology, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Enzyme-Linked Immunosorbent Assay, Escherichia coli genetics, Gene Expression Regulation, Bacterial, Immune Sera immunology, Molecular Sequence Data, Rabbits, Recombinant Proteins genetics, Recombinant Proteins immunology, Sodium Dodecyl Sulfate metabolism, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Antigens, Bacterial immunology, Bacterial Proteins genetics, Bacterial Proteins immunology, Campylobacter jejuni genetics
- Abstract
Fourteen Campylobacter jejuni genes--porA, cadF, omp18, dnaK, flaC, peb1, peb2, peb3, peb4, ahpC, groEL, tuF, hipO, and Cj0069--were cloned and expressed in Escherichia coli BL21. The recombinant proteins were purified on histidine (His) and glutathione S-transferase (GST) trap columns using the ÄKTA Explorer 100 System. Recombinant proteins were visualized using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and identified using matrix-assisted laser desorption ionization time-of-flight mass spectrometry. The antigenicities of these recombinant proteins were assessed by Western blotting and enzyme-linked immunosorbent assays with anti-C. jejuni immune rabbit sera. Four recombinant proteins, including rGST-PorA, rHis-CadF, rGST-GroEL, and rGST-TuF, demonstrated reactions with both anti-serum and preimmune serum, while rHis-DnaK, rGST-FlaC, rGST-PEB2, rGST-PEB3, rGST-PEB4, and rGST-HipO showed variable antigenicity characteristics to the anti-sera derived from different C. jejuni strains. rHis-Omp18, rHis-PEB1, and rGST-AhpC demonstrated universal and specific antigenities with the entire anti-sera panel tested in this present study, while recombinant rGST-Cj0069 and rHis-DnaK did not react with any of the anti-C. jejuni sera tested. In conclusion, rGST-AhpC may be useful as a potential serodiagnostic antigen for C. jejuni infection.
- Published
- 2012
- Full Text
- View/download PDF
49. Comparative genomics of Helicobacter pylori strains of China associated with different clinical outcome.
- Author
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You Y, He L, Zhang M, Fu J, Gu Y, Zhang B, Tao X, and Zhang J
- Subjects
- China, Genomic Islands genetics, Humans, Oligonucleotide Array Sequence Analysis, Species Specificity, Genetic Variation, Genome, Bacterial genetics, Helicobacter Infections genetics, Helicobacter pylori genetics, Stomach Diseases microbiology
- Abstract
In this study, a whole-genome CombiMatrix Custom oligonucleotide tiling microarray with 90,000 probes covering six sequenced Helicobacter pylori (H. pylori) genomes was designed. This microarray was used to compare the genomic profiles of eight unsequenced strains isolated from patients with different gastroduodenal diseases in Heilongjiang province of China. Since significant genomic variation was found among these strains, an additional 76 H. pylori strains associated with different clinical outcomes were isolated from various provinces of China. These strains were tested by polymerase chain reaction to demonstrate this distinction. We identified several highly variable regions in strains associated with gastritis, gastric ulceration, and gastric cancer. These regions are associated with genes involved in the bacterial type I, type II, and type III R-M systems. They were also associated with the virB gene, which lies on the well-studied cag pathogenic island. While previous studies have reported on the diverse genetic characterization of this pathogenic island, in this study, we find that it is conserved in all strains tested by microarray. Moreover, a number of genes involved in the type IV secretion system, which is related to horizontal DNA transfer between H. pylori strains, were identified in the comparative analysis of the strain-specific genes. These findings may provide insight into new biomarkers for the prediction of gastric diseases.
- Published
- 2012
- Full Text
- View/download PDF
50. Genomic characterization of the Guillain-Barre syndrome-associated Campylobacter jejuni ICDCCJ07001 Isolate.
- Author
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Zhang M, He L, Li Q, Sun H, Gu Y, You Y, Meng F, and Zhang J
- Subjects
- Bacterial Proteins genetics, Campylobacter jejuni classification, Campylobacter jejuni isolation & purification, China epidemiology, DNA, Bacterial chemistry, DNA, Bacterial genetics, DNA, Circular chemistry, DNA, Circular genetics, Disease Outbreaks, Guillain-Barre Syndrome epidemiology, Molecular Sequence Data, Open Reading Frames genetics, Sequence Analysis, DNA, Species Specificity, Campylobacter jejuni genetics, Genome, Bacterial genetics, Genomics methods, Guillain-Barre Syndrome microbiology
- Abstract
Campylobacter jejuni ICDCCJ07001 (HS:41, ST2993) was isolated from a Guillain-Barré syndrome (GBS) patient during a 36-case GBS outbreak triggered by C. jejuni infections in north China in 2007. Sequence analysis revealed that the ICDCCJ07001 genome consisted of 1,664,840 base pairs (bp) and one tetracycline resistance plasmid of 44,084 bp. The GC content was 59.29% and 1,579 and 37 CDSs were identified on the chromosome and plasmid, respectively. The ICDCCJ07001 genome was compared to C. jejuni subsp. jejuni strains 81-176, 81116, NCTC11168, RM1221 and C. jejuni subsp. doylei 269.97. The length and organization of ICDCCJ07001 was similar to that of NCTC11168, 81-176 and 81-116 except that CMLP1 had a reverse orientation in strain ICDCCJ07001. Comparative genomic analyses were also carried out between GBS-associated C. jejuni strains. Thirteen common genes were present in four GBS-associated strains and 9 genes mapped to the LOS cluster and the ICDCCJ07001_pTet (44 kb) plasmid was mosaic in structure. Thirty-seven predicted CDS in ICDCCJ07001_pTet were homologous to genes present in three virulence-associated plasmids in Campylobacter: 81-176_pTet, pCC31 and 81-176_pVir. Comparative analysis of virulence loci and virulence-associated genes indicated that the LOS biosynthesis loci of ICDCCJ07001 belonged to type A, previously reported to be associated with cases of GBS. The polysaccharide capsular biosynthesis (CPS) loci and the flagella modification (FM) loci of ICDCCJ07001 were similar to corresponding sequences of strain 260.94 of similar serotype as strain ICDCCJ07001. Other virulence-associated genes including cadF, peb1, jlpA, cdt and ciaB were conserved between the C. jejuni strains examined.
- Published
- 2010
- Full Text
- View/download PDF
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