24 results on '"Li, Qinrui"'
Search Results
2. Clinical phenotypes of developmental and epileptic encephalopathy-related recurrent KCNH5 missense variant p.R327H in Chinese children
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Huang, Sheng, Hu, Chunhui, Zhong, Min, Li, Qinrui, Dai, Yuanyuan, Ma, Jiehui, Qin, Jiong, and Sun, Dan
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- 2024
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3. Influencing factors and contribution analysis of CO2 emissions originating from final energy consumption in Sichuan Province, China
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Liu, Wei, Jia, Zhijie, Du, Meng, Dong, Zhanfeng, Pan, Jieyu, Li, Qinrui, Pan, Linyan, and Umole, Chris
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- 2022
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4. Pediatric Autoimmune Encephalitis and Its Relationship With Infection
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Li, Qinrui, Fu, Na, Han, Ying, and Qin, Jiong
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- 2021
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5. Fragile X Syndrome: Prevalence, Treatment, and Prevention in China
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Niu, Manman, Han, Ying, Dy, Angel Belle C, Du, Junbao, Jin, Hongfang, Qin, Jiong, Zhang, Jing, Li, Qinrui, and Hagerman, Randi J
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Cognitive and Computational Psychology ,Biomedical and Clinical Sciences ,Psychology ,Prevention ,Brain Disorders ,Intellectual and Developmental Disabilities (IDD) ,Fragile X Syndrome ,Rare Diseases ,Pediatric ,Mental Health ,Autism ,Aetiology ,2.1 Biological and endogenous factors ,fragile X syndrome ,prevalence ,treatment ,prevention ,China ,Clinical Sciences ,Neurosciences ,Clinical sciences ,Biological psychology - Abstract
Fragile X syndrome (FXS) is the most common inherited cause of intellectual disability and the leading monogenic cause of autism spectrum disorder. Although FXS has been studied for several decades, there is relatively little basic science or clinical research being performed on FXS in China. Indeed, there is a large gap between China and Western countries in the FXS field. China has a potentially large number of FXS patients. However, many of them are underdiagnosed or even misdiagnosed, and treatments are not always administered in the Chinese population. This review discusses the prevalence, treatment, and prevention of FXS in China to facilitate an understanding of this disease in the Chinese population.
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- 2017
6. The Gut Microbiota and Autism Spectrum Disorders
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Li, Qinrui, Han, Ying, Dy, Angel Belle C, and Hagerman, Randi J
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Microbiology ,Biological Sciences ,Biomedical and Clinical Sciences ,Brain Disorders ,Behavioral and Social Science ,Neurosciences ,Autism ,Pediatric ,Mental Health ,Intellectual and Developmental Disabilities (IDD) ,Inflammatory Bowel Disease ,Nutrition ,Autoimmune Disease ,Digestive Diseases ,Aetiology ,2.1 Biological and endogenous factors ,Mental health ,Oral and gastrointestinal ,autism spectrum disorder ,gut microbiota ,brain-gut axis ,probiotics ,fecal microbiota transplantation ,Biochemistry and Cell Biology ,Biochemistry and cell biology ,Biological psychology - Abstract
Gastrointestinal (GI) symptoms are a common comorbidity in patients with autism spectrum disorder (ASD), but the underlying mechanisms are unknown. Many studies have shown alterations in the composition of the fecal flora and metabolic products of the gut microbiome in patients with ASD. The gut microbiota influences brain development and behaviors through the neuroendocrine, neuroimmune and autonomic nervous systems. In addition, an abnormal gut microbiota is associated with several diseases, such as inflammatory bowel disease (IBD), ASD and mood disorders. Here, we review the bidirectional interactions between the central nervous system and the gastrointestinal tract (brain-gut axis) and the role of the gut microbiota in the central nervous system (CNS) and ASD. Microbiome-mediated therapies might be a safe and effective treatment for ASD.
- Published
- 2017
7. Alterations of apoptosis and autophagy in developing brain of rats with epilepsy: Changes in LC3, P62, Beclin-1 and Bcl-2 levels
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Li, Qinrui, Han, Ying, Du, Junbao, Jin, Hongfang, Zhang, Jing, Niu, Manman, and Qin, Jiong
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- 2018
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8. Endogenous sulfur dioxide regulates hippocampal neuron apoptosis in developing epileptic rats and is associated with the PERK signaling pathway
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Niu, Manman, Han, Ying, Li, Qinrui, and Zhang, Jing
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- 2018
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9. Recombinant human erythropoietin protects against brain injury through blunting the mTORC1 pathway in the developing brains of rats with seizures
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Li, Qinrui, Han, Ying, Du, Junbao, Jin, Hongfang, Zhang, Jing, Niu, Manman, and Qin, Jiong
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- 2018
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10. Recombinant Human Erythropoietin Protects Against Hippocampal Damage in Developing Rats with Seizures by Modulating Autophagy via the S6 Protein in a Time-Dependent Manner
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Li, Qinrui, Han, Ying, Du, Junbao, Jin, Hongfang, Zhang, Jing, Niu, Manman, and Qin, Jiong
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- 2017
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11. Study on the comprehensive evaluation of low carbon city based on PSR model and normalized index transformation
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Liu Wei, Li Fenggang, Che Kangli, Umole Chris, Jia Zhijie, and Li Qinrui
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Environmental sciences ,GE1-350 - Abstract
Referring the “stress-state-response” (PSR) model, the index system of low-carbon city was constructed. The Immune Evolution Chaos Weed Algorithm was used to optimize the Weber Fechner index formula and the universal Carson index formula. A low-carbon city evaluation method was established and applied to evaluate the low-carbon development level of Beijing, Tianjin, Shanghai, and Chongqing in 2015. The results showed that the evaluation results of the Weber Fechner index formula and the universal Carson index formula for the four cities were basically the same. The low-carbon development level (Weber Fechner Composite Index XI) of the four cities in 2015 was ranked as follows: Beijing (0.590), Shanghai (0.499), Tianjin (0.467), Chongqing (0.461).
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- 2020
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12. The Role of Microtubule Associated Serine/Threonine Kinase 3 Variants in Neurodevelopmental Diseases: Genotype-Phenotype Association.
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Shu, Li, Xiao, Neng, Qin, Jiong, Tian, Qi, Zhang, Yanghui, Li, Haoxian, Liu, Jing, Li, Qinrui, Gu, Weiyue, Wang, Pengchao, Wang, Hua, and Mao, Xiao
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THREONINE ,AUTISM spectrum disorders ,MICROTUBULES ,SERINE ,MISSENSE mutation ,SERINE/THREONINE kinases - Abstract
Objective: To prove microtubule associated serine/threonine kinase 3 (MAST3) gene is associated with neurodevelopmental diseases (NDD) and the genotype-phenotype correlation. Methods: Trio exome sequencing (trio ES) was performed on four NDD trios. Bioinformatic analysis was conducted based on large-scale genome sequencing data and human brain transcriptomic data. Further in vivo zebrafish studies were performed. Results: In our study, we identified four de novo MAST3 variants (NM_015016.1: c.302C > T:p.Ser101Phe; c.311C > T:p.Ser104Leu; c.1543G > A:p.Gly515Ser; and c.1547T > C:p.Leu516Pro) in four patients with developmental and epileptic encephalopathy (DEE) separately. Clinical heterogeneities were observed in patients carrying variants in domain of unknown function (DUF) and serine-threonine kinase (STK) domain separately. Using the published large-scale exome sequencing data, higher CADD scores of missense variants in DUF domain were found in NDD cohort compared with gnomAD database. In addition, we obtained an excess of missense variants in DUF domain when compared autistic spectrum disorder (ASD) cohort with gnomAD database, similarly an excess of missense variants in STK domain when compared DEE cohort with gnomAD database. Based on Brainspan datasets, we showed that MAST3 expression was significantly upregulated in ASD and DEE-related brain regions and was functionally linked with DEE genes. In zebrafish model, abnormal morphology of central nervous system was observed in mast3a/b crispants. Conclusion: Our results support the possibility that MAST3 is a novel gene associated with NDD which could expand the genetic spectrum for NDD. The genotype-phenotype correlation may contribute to future genetic counseling. [ABSTRACT FROM AUTHOR]
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- 2022
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13. Characterization of Intestinal Microbiota and Probiotics Treatment in Children With Autism Spectrum Disorders in China.
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Niu, Manman, Li, Qinrui, Zhang, Jishui, Wen, Fang, Dang, Weili, Duan, Guiqin, Li, Haifeng, Ruan, Wencong, Yang, Pingri, Guan, Chunrong, Tian, Huiling, Gao, Xiaoqing, Zhang, Shaobin, Yuan, Fangfang, and Han, Ying
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CHILDREN with autism spectrum disorders ,GUT microbiome ,PROBIOTICS ,BEHAVIORAL assessment ,AUTISM spectrum disorders - Abstract
Background: Most previous studies have found that human intestinal microbiota affect the symptoms of autism spectrum disorder (ASD), especially gastrointestinal (GI) symptoms, but regarding this, there is limited data of non-western ethnicity. Probiotics can reconstitute the host intestinal microbiota and strengthen gastrointestinal function, however, clinical data proving the effect of probiotics treatment on ASD is lacking. Methods: This study explored the significant differences between ASD and neurotypical (NT), and the improvement of applied behavior analysis (ABA) training in combination with probiotics, vs. ABA training only. Results: We found significant differences between the ASD group and the NT group in the evenness of the intestinal microbiota and the relative abundance of the bacterial phyla and genus. At the phylum level, relative abundance of Bacteroidetes in the ASD group was significantly lower than in the NT group. At the genus level, the relative abundance of Bacteroides, Bifidobacterium, Ruminococcus, Roseburia , and Blautia in the ASD group was significantly lower than that in the NT group. After a 4-week ABA training program in combination with probiotics treatment, the ATEC and GI scores decreased more than the control group with ABA training only. Conclusion: Our findings suggest that intestinal microbiota is different between the NT children and the ASD children with or without GI problems. In combination with ABA training, probiotics treatment can bring more benefit to ASD children. Clinical trials with a more rigorous design and larger sample size are indispensable for further validation. [ABSTRACT FROM AUTHOR]
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- 2019
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14. Inhibition of TRIB3 Protects Against Neurotoxic Injury Induced by Kainic Acid in Rats.
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Zhang, Jing, Han, Ying, Zhao, Yang, Li, Qinrui, Jin, Hongfang, and Qin, Jiong
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GLUCOSE-regulated proteins ,KAINIC acid ,ENDOPLASMIC reticulum ,RATS ,ACCIDENTS ,PROTEIN expression - Abstract
Epilepsy refers to a group of neurological disorders of varying etiologies characterized by recurrent seizures, resulting in brain dysfunction. Endoplasmic reticulum (ER) stress is highly activated in the process of epilepsy-related brain injury. However, the mechanisms by which ER stress triggers neuronal apoptosis remain to be fully elucidated. Tribbles pseudokinase 3 (TRIB3) is a pseudokinase that affects a number of cellular functions, and its expression is increased during ER stress. Here, we sought to clarify the role of TRIB3 in neuronal apoptosis mediated by ER stress. In the kainic acid (KA) (10 mg/kg)-induced rat seizure model, we characterized neuronal injury and apoptosis after KA injection. KA induced an ER stress response, as indicated by elevated expression of glucose-regulated protein 78 (GRP78) and C/EBP homologous protein (CHOP). TRIB3 protein was upregulated concomitantly with the downregulation of phosphorylated-protein kinase B (p-AKT) in rats following KA administration. In rat cortical neurons treated with KA, TRIB3 knockdown by siRNA reduced the number of dying neurons, decreased the induction of GRP78 and CHOP and the activation of caspase-3, and blocked the dephosphorylation of AKT after KA treatment. Our findings indicate that TRIB3 is involved in neuronal apoptosis occurring after KA-induced seizure. The knockdown of TRIB3 effectively protects against neuronal apoptosis in vitro , suggesting that TRIB3 may be a potential therapeutic target for the treatment of epilepsy. [ABSTRACT FROM AUTHOR]
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- 2019
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15. Recombinant Human Erythropoietin Protects Against Hippocampal Damage in Developing Rats with Seizures by Modulating Autophagy via the S6 Protein in a Time-Dependent Manner.
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Li, Qinrui, Han, Ying, Du, Junbao, Jin, Hongfang, Zhang, Jing, Niu, Manman, and Qin, Jiong
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EPILEPSY risk factors ,TREATMENT of epilepsy ,RECOMBINANT erythropoietin ,AUTOPHAGY ,KAINIC acid ,THERAPEUTICS - Abstract
Epilepsy is among the most common neurological disorders. Recurrent seizures result in neuronal death, cognitive deficits and intellectual disabilities in children. Currently, recombinant human erythropoietin (rhEPO) is considered to play a neuroprotective role in nervous system disorders. However, the precise mechanisms through which rhEPO modulates epilepsy remain unknown. Based on results from numerous studies, we hypothesized that rhEPO protects against hippocampal damage in developing rats with seizures probably by modulating autophagy via the ribosomal protein S6 (S6) in a time-dependent manner. First, we observed that rats with recurrent seizures displayed neuronal loss in the hippocampal CA1 region. Second, rhEPO injection reduced neuronal loss and decreased the number of apoptotic cells in the hippocampal CA1 region. Moreover, rhEPO increased the Bcl-2 protein expression levels and decreased the ratio of cleaved caspase-3/caspase-3 in the hippocampus. Finally, rhEPO modulated autophagy in the hippocampus in a time-dependent manner, probably via the S6 protein. In summary, rhEPO protects against hippocampal damage in developing rats with seizures by modulating autophagy in a time-dependent manner, probably via the S6 protein. Consequently, rhEPO is a likely drug candidate that is capable of attenuating brain injury. [ABSTRACT FROM AUTHOR]
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- 2018
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16. Autism Symptoms in Fragile X Syndrome.
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Niu, Manman, Han, Ying, Dy, Angel Belle C., Du, Junbao, Jin, Hongfang, Qin, Jiong, Zhang, Jing, Li, Qinrui, and Hagerman, Randi J.
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FRAGILE X syndrome ,GENETICS of autism ,SYMPTOMS ,AUTISM spectrum disorders ,DEVELOPMENTAL disabilities - Abstract
Fragile X syndrome (FXS) is recognized as the most common genetic cause of intellectual disability and autism spectrum disorder (ASD). Although symptoms of ASD are frequently observed in patients with FXS, researchers have not yet clearly determined whether the symptoms in patients with FXS differ from the symptoms in patients without ASD or nonsyndromic ASD. Behavioral similarities and differences between FXS and ASD are important to improve our understanding of the causes and correlations of ASD with FXS. Based on the evidence presented in this review, individuals with FXS and comorbid ASD have more severe behavioral problems than individuals with FXS alone. However, patients with FXS and comorbid ASD exhibit less severe impairments in the social and communication symptoms than patients with nonsyndromic ASD. Individuals with FXS also present with anxiety and seizures in addition to comorbid ASD symptoms, and differences in these conditions are noted in patients with FXS and ASD. This review also discusses the role of fragile X mental retardation 1 protein (FMRP) in FXS and ASD phenotypes. [ABSTRACT FROM AUTHOR]
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- 2017
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17. A long journey to treat epilepsy with the gut microbiota.
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Li Q, Gu Y, Liang J, Yang Z, and Qin J
- Abstract
Epilepsy is a common neurological disorder that affects approximately 10.5 million children worldwide. Approximately 33% of affected patients exhibit resistance to all available antiseizure medications, but the underlying mechanisms are unknown and there is no effective treatment. Increasing evidence has shown that an abnormal gut microbiota may be associated with epilepsy. The gut microbiota can influence the function of the brain through multiple pathways, including the neuroendocrine, neuroimmune, and autonomic nervous systems. This review discusses the interactions between the central nervous system and the gastrointestinal tract (the brain-gut axis) and the role of the gut microbiota in the pathogenesis of epilepsy. However, the exact gut microbiota involved in epileptogenesis is unknown, and no consistent results have been obtained based on current research. Moreover, the target that should be further explored to identify a novel antiseizure drug is unclear. The role of the gut microbiota in epilepsy will most likely be uncovered with the development of genomics technology., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Li, Gu, Liang, Yang and Qin.)
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- 2024
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18. Astrocyte-derived complement C3 is activated in patients with tuberous sclerosis complex and mediates immune injury: an integrated bioinformatics analysis.
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Zhang B, Qiao J, Li Q, Luan G, and Qin J
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Background: Tuberous sclerosis complex (TSC) is a genetic disorder associated with multiple neurological manifestations. Cortical tubers (CT) are recognized as the hallmark brain lesions of TSC and contribute to neurological and psychiatric symptoms. To understand the molecular mechanism of neuropsychiatric features of TSC, the differentially expressed genes (DEGs) in CT from patients with TSC and those in normal cortex (NC) from participants acting as healthy controls were investigated., Methods: The dataset of GSE16969, which had already been published and described (https://onlinelibrary.wiley.com/doi/10.1111/j.1750-3639.2009.00341.x), was downloaded from the Gene Expression Omnibus (GEO), including samples of 4 CT and 4 NC. The R package "limma" was used to screen DEGs in CT and NC. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways enrichment analyses of the DEGs were conducted using the R package "clusterProfiler". The online software Ingenuity Pathway Analysis (IPA) was used to explore activation/inaction of canonical pathways. The hub gene was selected based on the protein-protein interaction (PPI) network constructed using the Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database and Cytoscape software. Subsequently, the hub genes at messenger (mRNA) and transcriptional levels were tested. We also explored immune cell-type enrichment using the online database xCell, and assessed the correlation between cell types and C3 expression. Then, we verified the source of C3 by constructing TSC2 knockout cells in the U87 astrocyte cell line. The human neuronal cell line SH-SY5Y was used to examine the effects of excessive complement C3 levels., Results: A total of 455 DEGs were identified. A large number of pathways were involved in the immune response process based on the results of GO, KEGG, and IPA. C3 was identified as a hub gene. Complement C3 was also upregulated in the human CT and peripheral blood. Furthermore, based on the enrichment of functions and signaling pathways, complement C3 played a critical role in immune injury in CT of TSC. In the in vitro experiments, we found that excessive complement C3 was derived from TSC2 knockout U87 cells, and there was an increased intracellular reactive oxygen species (ROS) level in SH-SY5Y cells., Conclusions: Complement C3 is activated in patients with TSC and can mediate immune injury., Competing Interests: Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at https://tp.amegroups.com/article/view/10.21037/tp-22-514/coif). The authors have no conflicts of interest to declare., (2023 Translational Pediatrics. All rights reserved.)
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- 2023
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19. A Ketogenic Diet and the Treatment of Autism Spectrum Disorder.
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Li Q, Liang J, Fu N, Han Y, and Qin J
- Abstract
Autism spectrum disorder (ASD) is characterized by stereotyped behavior and deficits in communication and social interaction. There are no curative treatments for children with ASD. The ketogenic diet (KD) is a high-fat, appropriate-protein, and low-carbohydrate diet that mimics the fasting state of the body and is proven beneficial in drug-resistant epilepsy and some other brain diseases. An increasing number of studies demonstrated that a KD improved autistic behavior, but the underlying mechanisms are not known. We reviewed the neuroprotective role of a KD in ASD, which is likely mediated via improvements in energy metabolism, reductions in antioxidative stress levels, control of neurotransmitters, inhibition of the mammalian target of rapamycin (mTOR) signaling pathway, and modulation of the gut microbiota. A KD is likely a safe and effective treatment for ASD., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Li, Liang, Fu, Han and Qin.)
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- 2021
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20. Corrigendum: Prevalence of Anemia and Its Associated Risk Factors Among 6-Months-Old Infants in Beijing.
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Li Q, Liang F, Liang W, Shi W, and Han Y
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[This corrects the article DOI: 10.3389/fped.2019.00286.]., (Copyright © 2019 Li, Liang, Liang, Shi and Han.)
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- 2019
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21. Prevalence of Anemia and Its Associated Risk Factors Among 6-Months-Old Infants in Beijing.
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Li Q, Liang F, Liang W, Shi W, and Han Y
- Abstract
Objective: The worldwide prevalence of anemia is ~24.8%. Iron deficiency anemia is common in children and women and associated with sensory, motor, cognitive, language, and socioemotional deficits. Therefore, detection and early intervention strategies for anemia in infants are urgently needed. To prevent the occurrence of iron deficiency anemia, we aimed to identify risk factors associated with anemia in infants. Methods: This investigation involved a cross-sectional study of 6-months-old infants discharged between April 2014 and September 2017 from Peking University First Hospital. We assessed birth information, maternal age, and maternal educational level as well as data on feeding style, complementary foods and primary caregivers. The infants were assessed with the Denver Developmental Screening Test (DDST). Results: A total of 1,127 6-months-old infants were enrolled at the hospital. We found that the prevalence of anemia among infants in Beijing was ~11.8%. Premature infants had a higher rate of anemia than full-term infants (χ
2 = 40.103, P < 0.001). Infants born in autumn or winter were at an elevated risk of developing anemia (χ2 = 22.949, P < 0.001). Birth weight had no effect on the rate of anemia in infants (χ2 = 0.023, P = 0.568). Infants who were exclusively breastfeeding had higher anemia rates than those who were fed formula (χ2 = 38.466, P < 0.001). Infants whose caregivers added no complementary foods had higher anemia rates (24.7%) than those whose caregivers added more than two kinds of complementary food (8.2%). The type of caregiver had no effect on the anemia rate in infants (χ2 = 0.031, P = 1.000). Conclusions: The following factors resulted in a higher prevalence of anemia in our study a gestational age at birth of <37 weeks, exclusive breastfeeding, a lack of supplementation with complementary foods and a spring birth date. No significant differences in DDST pass rates were evident between infants with and without anemia.- Published
- 2019
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22. The Influence of Different Caregivers on Infant Growth and Development in China.
- Author
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Li Q, Liang F, Liang W, Zhang J, Niu M, and Han Y
- Abstract
Objective: An increasing number of parents in China ask grandparents or babysitters to care for their children. Modern parents are often the only child in their family because of China's One-Child Policy and thus may lack interaction with siblings. Accordingly, the present study aimed to explore whether different caregivers affect the physical and development of infants in China., Methods: In total, 2,514 infants were enrolled in our study. We assessed their weight-for-age, supine length-for-age, weight-for-length, occipital-frontal circumference, and Denver Developmental Screening Test (DDST) results and recorded their general parental information and their primary caregivers., Results: The weights and lengths of 12-month-old infants under the care of babysitters were significantly lower than those of infants under the care of parents or grandparents ( P < 0.05). Additionally, 12-month-old infants under the care of babysitters had the lowest DDST pass rate (75%) among the three groups (χ
2 = 11.819, P = 0.012), especially for the fine motor-adaptive and language domains. Compared to 12-month-old infants under the care of parents and babysitters, infants under the care of grandparents were more likely to be overweight or obese ( P < 0.001)., Conclusion: The study showed that caregivers had a dominant role in the physical and cognitive development of the infants. Specifically, compared with infants raised by grandparents and parents, 12-month-old infants under the care of babysitters had partially suppressed lengths and weights and lagged cognitively. The 12-month-old infants under the care of grandparents were more overweight than those cared for by parents and babysitters.- Published
- 2017
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23. The Gut Microbiota and Autism Spectrum Disorders.
- Author
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Li Q, Han Y, Dy ABC, and Hagerman RJ
- Abstract
Gastrointestinal (GI) symptoms are a common comorbidity in patients with autism spectrum disorder (ASD), but the underlying mechanisms are unknown. Many studies have shown alterations in the composition of the fecal flora and metabolic products of the gut microbiome in patients with ASD. The gut microbiota influences brain development and behaviors through the neuroendocrine, neuroimmune and autonomic nervous systems. In addition, an abnormal gut microbiota is associated with several diseases, such as inflammatory bowel disease (IBD), ASD and mood disorders. Here, we review the bidirectional interactions between the central nervous system and the gastrointestinal tract (brain-gut axis) and the role of the gut microbiota in the central nervous system (CNS) and ASD. Microbiome-mediated therapies might be a safe and effective treatment for ASD.
- Published
- 2017
- Full Text
- View/download PDF
24. Comparative transcriptome analysis of atrial septal defect identifies dysregulated genes during heart septum morphogenesis.
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Wang W, Niu Z, Wang Y, Li Y, Zou H, Yang L, Meng M, Wei C, Li Q, Duan L, Xie Y, Zhang Y, Cao Y, Han S, Hou Z, and Jiang L
- Subjects
- Female, Heart Septal Defects, Atrial pathology, Heart Septum pathology, Humans, Infant, Newborn, Male, Myocytes, Cardiac pathology, Gene Expression Regulation, Developmental, Heart Septal Defects, Atrial embryology, Heart Septum embryology, Myocytes, Cardiac metabolism, Organogenesis, Transcriptome
- Abstract
Congenital heart disease (CHD) is one of most common birth defects, causing fetal loss and death in newborn all over the world. Atrial and ventricular septal defects were the most common CHD subtypes in most districts. During the past decades, several genes were identified to control atrial septum formation, and mutations of these genes can cause cardiac septation defects. However, the pathogenic mechanism of ASD on transcriptional levels has not been well elucidated yet. Herein, we performed comparative transcriptome analysis between normal and atrial septal defect (ASD) patients by Illumina RNA sequencing (RNA-seq). Advanced bioinformatic analyses were employed to identify dysregulated genes in ASD. The results indicated that cardiac specific transcriptional factors (GATA4 and NKX2-5), extracellular signal molecules (VEGFA and BMP10) and cardiac sarcomeric proteins (MYL2, MYL3, MYH7, TNNT1 and TNNT3) were downregulated in ASD which may affect heart atrial septum formation, cardiomyocyte proliferation and cardiac muscle development. Importantly, cell cycle was dominant pathway among downregulated genes, and decreased expression of the proteins included in cell cycle may disturb cardiomyocyte growth and differentiation during atrial septum formation. Our study provided evidences of understanding pathogenic mechanism of ASD and resource for validation of CHD genomic studies., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2016
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