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Potatoes are prone to attack by multiple viruses, which contribute greatly to yield and quality decline depending on the cultivar and the virus involved. This study investigated the effect of co-infection involving Potato virus Y (potyvirus) and Potato leafroll Virus (pelero virus) on productivity of five potato cultivars in Uganda and the nature of virus interaction during co-infection process. Variety response to virus infection by PVY, PLRV and co-infection (PVY + PLRV) varied across different varieties. The plants that were infected with PLRV had leaf rolling, stuntedness, leaf distortion, reduction in leaf size and mottling and light yellow mosaics, and in some cases, purple or red margins were observed, while single infection of PVY induced necrosis, leaf rugosity, crinkling, stunting, interveinal necrosis, blotching of the margins, leaf distortion and mottling. When the two viruses were combined during co-infection with PVY + PLRV, the symptoms were characterized by bright blotching and necrotic leaf margins with purpling of the leaf tips and leaf margins, stuntedness and leaf distortions. The virus disease severity was higher under mixed infected plants than single infected plants. The high disease severity culminated in a significant effect on yield, marketable tuber number per plant, plant growth height and plant vigor, which were different across the varieties. Co-infection involving PVY and PLRV caused a reduction in the marketable yield of 95.2% (Kinigi), 94% (Victoria), 89.5 (Rwagume), 45.3% (Royal) and 23.7% (Sifra). Single infection by PLRV caused a reduction in a marketable yield in Victoria (91.8%), Kinigi (84.8%), Rwagume (73.3%), Royal (47.2%) and Sifra 22.1%, while PVY caused a marketable yield reduction in Victoria (87.2%), Rwagume (85.9.7%), Kinigi (85.1%), Royal (37.4%) and Sifra (14.1%). The effects associated with the co-infection of PVY and PLRV were lower than the combined value of the single infections, suggesting that the two viruses were interacting to affect the potato productivity. The high yield loss suggested that effective resistance strategy targeting PVY, PLRV and their combination was required to save the potato industry in Uganda.

Cowpea ( Vigna unguiculata L. Walp) is the third most important legume food crop in Uganda. It is the main legume food crop in the Eastern and Northern regions of the country, however, its mean yield is less than 400 kg ha −1 . Scab ( Sphaceloma sp.) which is a seed-borne disease is one of the major constraints of cowpea production in the country, capable of causing yield losses of up to 100%. Cowpea scab is the anamorph of Elsinoe phaseoli in common bean (bean scab). The disease affects all the above ground parts of the cowpea plant. A study was conducted in the country to determine the incidence, severity and distribution of scab disease in 17 cowpea growing districts across three agro-ecological zones over a two year period. The results indicated that scab disease was widespread in all the districts with mean incidence ranging between 35 and 70% and mean severity 2–4. Tororo and Amuria districts had the highest incidence and severity, while Bukedea and Arua districts recorded the least disease incidence and severity. Cowpea fields located at altitudes above 1200 m.a.s.l had the highest mean disease incidence (82%) and severity (score = 3.4), while fields located on altitudes lying between 771 and 990 m.a.s.l registered the least disease incidence (64.7%) and severity (score = 2.7). The type of cultivar grown and cropping system practiced influenced the incidence and severity of the scab disease. The results of this study also showed that scab had high incidence and severity across districts and altitudes in Uganda suggesting the need to develop resistant cultivars. This indicates the need to establish the variability of the pathogen to inform the breeding programme for development of resistant varieties. [ABSTRACT FROM AUTHOR]

African dry and starchy (DS) orange-fleshed sweetpotato [Ipomoea batatas (L.) Lam] (OFSP) cultivars, distinct from American moist or medium dry and sweet OFSP, have potential to fight vitamin A deficiency (VAD) in the world. This study assessed the genotype X environment (G X E) interactions in multienvironment trials (METs), the genetic correlations for total root yield (TYLD), biomass (BIOM), harvest index (HI), root dry matter (RDM), root starch (RST), root sucrose (RSU), root β-carotene, (RBC), root Fe (RFE), root Zn (RZN), root Ca (RCA), and root Mg (RMG) and the potential contributions of the cultivars to fight VAD and mineral deficiencies. Nine DS OFSP cultivars, (Ejumula, Zambezi, Carrot_C, Kakamega, KMI61, Abuket_1, SPK004/6/6, SPK004/6 and Naspot_5/50) and a medium dry and sweet OFSP cultivar (Resisto) were tested in METs in Uganda. The components were smaller than σ2G components for HI, RDM, RST, RSU, and RBC, making it possible to ably select for the traits in the early stages. The σ2GXE components were larger than σ2G components for TYLD and mineral traits. Thus, like yield, breeding for mineral traits in sweetpotato is complex, requiring prior data on the causes of the G X E interactions. Medium to high positive correlations among mineral traits favor parallel selection, and it merits further study to efficiently improve the mineral trait complex by an index. Clearly, a 50- to 100-g ration of all the cultivars, except Naspot_5/50, can provide 100% recommended dietary allowance of vitamin A for a 5- to 8-yr-old child. [ABSTRACT FROM AUTHOR]

Sweetpotato (Ipomoea batatas) is a widely grown food crop, in which the most important diseases are caused by viruses. Genetic variability of three widely distributed sweetpotato viruses was analysed using data from 46 isolates ofSweet potato feathery mottle virus(SPFMV), 16 isolates ofSweet potato mild mottle virus(SPMMV) and 25 isolates ofSweet potato chlorotic stunt virus(SPCSV), of which 19, seven and six isolates, respectively, are newly characterized. Division of SPFMV into four genetic groups (strains) according to phylogenetic analysis of coat protein (CP) encoding sequences revealed that strain EA contained the East African isolates of SPFMV but none from elsewhere. In contrast, strain RC contained ten isolates from Australia, Africa, Asia and North America. Strain O contained six heterogeneous isolates from Africa, Asia and South America. The seven strain C isolates from Australia, Africa, Asia, and North and South America formed a group that was genetically distant from the other SPFMV strains. SPMMV isolates showed a high level of variability with no discrete strain groupings. SPCSV isolates from East Africa were phylogenetically distant to SPCSV isolates from elsewhere. Only from East Africa were adequate data available for different isolates of the three viruses to estimate the genetic variability of their local populations. The implications of the current sequence information and the need for more such information from most sweetpotato-growing regions of the world are discussed in relation to virus diagnostics and breeding for virus resistance. [ABSTRACT FROM AUTHOR]

Background:The bipartite single-stranded RNA genome of Sweet potato chlorotic stunt virus (SPCSV, genus Crinivirus; Closteroviridae) encodes a Class 1 RNase III (RNase3), a putative hydrophobic protein (p7) and a 22-kDa protein (p22) from genes located in RNA1. RNase3 and p22 suppress RNA silencing, the basal antiviral defence mechanism in plants. RNase3 is sufficient to render sweetpotato (Ipomoea batatas) virus-susceptible and predisposes it to development of severe diseases following infection with unrelated virus. The incidence, strains and gene content of SPCSV infecting wild plant species have not been studied. Methodology/Principal Findings:Thirty SPCSV isolates were characterized from 10 wild Ipomoea species, Hewittia sublobata or Lepistemon owariensis (family Convolvulaceae) in Uganda and compared with 34 local SPCSV isolates infecting sweetpotatoes. All isolates belonged to the East African (EA) strain of SPCSV and contained RNase3 and p7, but p22 was not detected in six isolates. The three genes showed only limited genetic variability and the proteins were under purifying selection. SPCSV isolates lacking p22 synergized with Sweet potato feathery mottle virus (SPFMV, genus potyvirus; Potyviridae) and caused severe symptoms in co-infected sweetpotato plants. One SPCSV isolate enhanced accumulation of SPFMV, but no severe symptoms developed. A new whitefly-transmitted virus (KML33b) encoding an RNase3 homolog (<56% identity to SPCSV RNase3) able to suppresses sense-mediated RNA silencing was detected in I. sinensis. Conclusions/Significance:SPCSV isolates infecting wild species and sweetpotato in Uganda were genetically undifferentiated, suggesting inter-species transmission of SPCSV. Most isolates in Uganda contained p22, unlike SPCSV isolates characterized from other countries and continents. Enhanced accumulation of SPFMV and increased disease severity were found to be uncoupled phenotypic outcomes of RNase3-mediated viral synergism in sweetpotato. A second virus encoding an RNase3-like RNA silencing suppressor was detected. Overall, results provided many novel and important insights into evolutionary biology of SPCSV. [ABSTRACT FROM AUTHOR]

The present study evaluated selected East African (EA) sweetpotato varieties for storage root dry matter and nutrient content and obtained information on the potential contributions of the varieties to alleviate vitamin A and mineral deficiencies. Roots obtained from 89 farmer (white- and orange-fleshed) varieties and one introduced variety ('Resisto') were analyzed for storage root quality using near-infrared reflectance spectroscopy technology. Location differences were only significant for starch content. The σG² variance was significant (P < 0.01) for all the traits except sucrose content. Overall, the farmer varieties had higher dry matter, higher starch, and lower sucrose contents than the control clone, 'Resisto'. It is these qualities that make sweetpotato attractive as a starchy staple in EA. A low population's mean β-carotene content (19.0 ppm) was observed. However, deep orange-fleshed farmer varieties, 'Carrot_C', 'Ejumula', 'Carrot Dar', 'Mayai', and 'Zambezi', had β-carotene content that can meet 350% or greater of recommended daily allowance (RDA) with 250-g serving to a 5- to 8-year-old child. More but light orange-fleshed farmer varieties 'K-118', 'K-134', 'K-46', 'KMI61', 'MLE162 Nakahi', 'PAL161', 'Sowola6', 'Sponge', 'SRT34 Abuket2', 'SRT35 Anyumel', 'SRT52', and 'Sudan' can provide 50% to 90% RDA of pro-vitamin A for the child. The root minerals' content was generally low except for magnesium whose content can meet 50% or greater RDA in many farmer varieties. However, in areas with high sweetpotato consumption, varieties 'Carrot_C', 'Carrot Dar', 'KRE nylon', 'MLE163 Kyebandula', and 'SRT49 Sanyuzameza' can make good intakes of iron, zinc, calcium, and magnesium. In conclusion, some EA farmer varieties can contribute greatly to alleviation of vitamin A deficiency and substantial mineral intakes. [ABSTRACT FROM AUTHOR]

Spatial and temporal expression patterns of the sbeII and sbeI genes, encoding starch branching enzyme II and I, respectively, in cassava (Manihot esculenta Crantz) were studied at different phenological stages of the crop. A partial cDNA for sbeII in cassava was cloned and used along with a cDNA-specific fragment of sbeI. As the cassava plant aged, the transcriptional activity of the sbeII and sbeI genes in the underground storage roots increased, whereas the activity in other organs remained the same or declined. At 180 days after planting (d.a.p.), levels of sbeII and sbeI transcripts in storage roots were very low, whereas at 360 d.a.p., the levels had increased dramatically. The 360 d.a.p. old storage roots also accumulated gbssII and gbssI transcripts, as well as a longer gbssI transcript, gbssI′. The difference between the gbssI and gbssI′ transcripts was shown to be due to differential splicing, whereby the gbssI′ transcript retained the first three introns. Unexpectedly, expression of sbeII and sbeI in the 360 d.a.p. storage roots exhibited fluctuations during the 24 h cycle, both under the normal light/dark regime and under continuous light or continuous dark conditions. [Copyright &y& Elsevier]

Background: The bipartite single-stranded RNA genome of Sweet potato chlorotic stunt virus (SPCSV, genus Crinivirus; Closteroviridae) encodes a Class 1 RNase III (RNase3), a putative hydrophobic protein (p7) and a 22-kDa protein (p22) from genes located in RNA1. RNase3 and p22 suppress RNA silencing, the basal antiviral defence mechanism in plants. RNase3 is sufficient to render sweetpotato (Ipomoea batatas) virus-susceptible and predisposes it to development of severe diseases following infection with unrelated virus. The incidence, strains and gene content of SPCSV infecting wild plant species have not been studied., Methodology/principal Findings: Thirty SPCSV isolates were characterized from 10 wild Ipomoea species, Hewittia sublobata or Lepistemon owariensis (family Convolvulaceae) in Uganda and compared with 34 local SPCSV isolates infecting sweetpotatoes. All isolates belonged to the East African (EA) strain of SPCSV and contained RNase3 and p7, but p22 was not detected in six isolates. The three genes showed only limited genetic variability and the proteins were under purifying selection. SPCSV isolates lacking p22 synergized with Sweet potato feathery mottle virus (SPFMV, genus potyvirus; Potyviridae) and caused severe symptoms in co-infected sweetpotato plants. One SPCSV isolate enhanced accumulation of SPFMV, but no severe symptoms developed. A new whitefly-transmitted virus (KML33b) encoding an RNase3 homolog (<56% identity to SPCSV RNase3) able to suppresses sense-mediated RNA silencing was detected in I. sinensis., Conclusions/significance: SPCSV isolates infecting wild species and sweetpotato in Uganda were genetically undifferentiated, suggesting inter-species transmission of SPCSV. Most isolates in Uganda contained p22, unlike SPCSV isolates characterized from other countries and continents. Enhanced accumulation of SPFMV and increased disease severity were found to be uncoupled phenotypic outcomes of RNase3-mediated viral synergism in sweetpotato. A second virus encoding an RNase3-like RNA silencing suppressor was detected. Overall, results provided many novel and important insights into evolutionary biology of SPCSV.

Starch branching enzyme (SBE) activity in the cassava storage root exhibited a diurnal fluctuation, dictated by a transcriptional oscillation of the corresponding SBE genes. The peak of SBE activity coincided with the onset of sucrose accumulation in the storage, and we conclude that the oscillatory mechanism keeps the starch synthetic apparatus in the storage root sink in tune with the flux of sucrose from the photosynthetic source. When storage roots were uncoupled from the source, SBE expression could be effectively induced by exogenous sucrose. Turanose, a sucrose isomer that cannot be metabolized by plants, mimicked the effect of sucrose, demonstrating that downstream metabolism of sucrose was not necessary for signal transmission. Also glucose and glucose-1-P induced SBE expression. Interestingly, induction by sucrose, turanose and glucose but not glucose-1-P sustained an overt semidian (12-h) oscillation in SBE expression and was sensitive to the hexokinase (HXK) inhibitor glucosamine. These results suggest a pivotal regulatory role for HXK during starch synthesis. Abscisic acid (ABA) was another potent inducer of SBE expression. Induction by ABA was similar to that of glucose-1-P in that it bypassed the semidian oscillator. Both the sugar and ABA signaling cascades were disrupted by okadaic acid, a protein phosphatase inhibitor. Based on these findings, we propose a model for sugar signaling in regulation of starch synthesis in the cassava storage root.

Sweetpotato plants were surveyed for viruslike diseases and viruses in the four major agroecological zones of Uganda. Testing of 1,260 sweetpotato plants, of which 634 had virus-like symptoms, showed that virus disease incidence ranged from 2.7% (Soroti district, short grassland-savannah zone) to 20% (Mukono district, tall grass-forest mosaic zone). Sweet potato chlorotic stunt virus (SPCSV), Sweet potato feathery mottle virus (SPFMV), Sweet potato mild mottle virus (SPMMV), and sweet potato chlorotic fleck virus (SPCFV) were serologically detected and positive results confirmed by immunocapture reverse transcriptase polymerase chain reaction (IC-RT-PCR) and subsequent sequence analyses of the amplified fragments, except SPCFV, which lacked sequence information. SPCSV and SPFMV were detected in all the 14 districts surveyed, whereas SPMMV and SPCFV were detected in 13 and 8 districts, respectively. Logistic regression analysis revealed that SPCSV and SPFMV, SPFMV and SPMMV, and SPFMV and SPCFV more frequently occurred together than any other virus combinations or as single virus infections. Co-infections of SPCSV with SPFMV and/or SPMMV were associated with more severe and persistent symptoms than infections with each of the viruses alone. Several plants (11%) displaying viruslike symptoms did not react with the virus antisera used, suggesting that more viruses or viruslike agents are infecting sweetpotatoes in Uganda.