31 results on '"Song, Xiyun"'
Search Results
2. Multiomics comparative analysis of the maize large grain mutant tc19 identified pathways related to kernel development
- Author
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Cai, Qing, Jiao, Fuchao, Wang, Qianqian, Zhang, Enying, Song, Xiyun, Pei, Yuhe, Li, Jun, Zhao, Meiai, and Guo, Xinmei
- Published
- 2023
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3. Genome-wide association study of quality traits and starch pasting properties of maize kernels
- Author
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Guo, Xinmei, Ge, Zhaopeng, Wang, Ming, Zhao, Meiai, Pei, Yuhe, and Song, Xiyun
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- 2023
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4. Transcriptome Analysis of Maize Ear Leaves under Long-Term Applications of Nitrogen Fertilizer and its Combinations with Phosphorus and Potassium Fertilizers
- Author
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Liu, Jintao, Zhu, Kaili, Zhao, Hongcui, Li, Yubin, Liu, Shutang, Song, Xiyun, and Li, Jun
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- 2022
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5. Transcriptomic analysis of the maize inbred line Chang7-2 and a large-grain mutant tc19
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Zhang, Yanrong, Jiao, Fuchao, Li, Jun, Pei, Yuhe, Zhao, Meiai, Song, Xiyun, and Guo, Xinmei
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- 2022
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6. Breeding Maize Hybrids with Improved Drought Tolerance Using Genetic Transformation.
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Li, Zhaoxia, Zhang, Juren, and Song, Xiyun
- Abstract
Drought is considered the main agricultural menace, limiting the successful realization of land potential, and thereby reducing crop productivity worldwide. Therefore, breeding maize hybrids with improved drought tolerance via genetic manipulation is necessary. Herein, the multiple bud clumps of elite inbred maize lines, DH4866, Qi319, Y478 and DH9938, widely used in China, were transformed with the Escherichia coli betA gene encoding choline dehydrogenase (EC 1.1.99.1), a key enzyme in the biosynthesis of glycine betaine from choline, using Agrobacterium to generate betA transgenic lines. After 3–4 consecutive generations of self-pollination in these transgenic plants, progenies with a uniform appearance, excellent drought tolerance, and useful agricultural traits were obtained. We evaluated the drought tolerance of T4 progenies derived from these transgenic plants in the field under reduced irrigation. We found that a few lines exhibited much higher drought tolerance than the non-transformed control plants. Transgenic plants accumulated higher levels of glycine betaine and were relatively more tolerant to drought stress than the controls at both the germination and early seedling stages. The grain yield of the transgenic plants was significantly higher than that of the control plants after drought treatment. Drought-tolerant inbred lines were mated and crossed to create hybrids, and the drought tolerance of these transgenic hybrids was found to be enhanced under field conditions compared with those of the non-transgenic (control) plants and two other commercial hybrids in China. High yield and drought tolerance were achieved concurrently. These transgenic inbred lines and hybrids were useful in marginal and submarginal lands in semiarid and arid regions. The betA transgene can improve the viability of crops grown in soils with sufficient or insufficient water. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Unravelling the Mechanisms of Improving Wheat Growth, Yield, and Grain Quality Under Long-Term Corn Straw Return plus N Fertilizer Mode
- Author
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Zhu, Kaili, Song, Chaoyu, Liu, Jintao, Gong, Mingbo, Wang, Shengjian, Song, Xiyun, and Li, Jun
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- 2021
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8. ZmD11 Gene Regulates Tobacco Plant Floral Development under Drought Stress.
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Li, Zhanfeng, Jiao, Fuchao, Sun, Zhiyi, Zhang, Enying, Song, Xiyun, Pei, Yuhe, Li, Jun, Cannon, Nicola, Chang, Xianmin, and Guo, Xinmei
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SUPEROXIDE dismutase ,NICOTIANA ,PLANT development ,BRASSINOSTEROIDS ,DROUGHTS - Abstract
Maize is most sensitive to drought stress at the floral stage by reducing tassel and silk quality, and thus improving drought tolerance at this stage may help preserve yield. It has been reported that BRs (brassinosteroids) promote floral development under drought stress. However, the function of the brassinosteroid biosynthesis gene ZmDWARF11 (ZmD11) on floral growth under drought stress has not been elucidated. This study found that under normal growth conditions, the heterologous over-expression of ZmD11 significantly enhanced both the vegetative growth and floral development of tobacco. Under drought stress, overexpressing ZmD11 reduced stress-induced tobacco flower size reduction, while it did not affect vegetative growth. After drought treatment, the activities of protective enzymes, including CAT (Catalase), SOD (Superoxide Dismutase), and POD (Peroxidase), were higher, while the content of MDA (Malondialdehyde) was lower in ZmD11 over-expression tobacco lines than that in the wild type control. The relative expression of dehydrin-related genes NtLeat5 and NtERD10 was increased in ZmD11 over-expression tobacco lines compared to that in the control. In summary, we reported that ZmD11 plays a role in tobacco floral development under drought stress. Our data are valuable in understanding the functions of BRs in regulating plant floral development under drought stress. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Myocardial blood flow measurement with a conventional dual-head SPECT/CT with spatiotemporal iterative reconstructions - a clinical feasibility study.
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Alhassen, Fares, Nguyen, Nhan, Bains, Sukhkarn, Gould, Robert G, Seo, Youngho, Bacharach, Stephen L, Song, Xiyun, Shao, Lingxiong, Gullberg, Grant T, and Aparici, Carina Mari
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Biomedical Imaging ,Clinical Research ,Heart Disease - Coronary Heart Disease ,Heart Disease ,Bioengineering ,Cardiovascular ,Detection ,screening and diagnosis ,4.2 Evaluation of markers and technologies ,Dynamic SPECT ,myocardial perfusion imaging ,(99)mTc-MIBI ,SPECT/CT ,spatiotemporal reconstruction ,uptake rate constant ,99mTc-MIBI - Abstract
Cardiac single photon emission computed tomography (SPECT) cameras typically rotate too slowly around a patient to capture changes in the blood pool activity distribution and provide accurate kinetic parameters. A spatiotemporal iterative reconstruction method to overcome these limitations was investigated. Dynamic rest/stress (99m)Tc-methoxyisobutylisonitrile ((99m)Tc-MIBI) SPECT/CT was performed along with reference standard rest/stress dynamic positron emission tomography (PET/CT) (13)N-NH3 in five patients. The SPECT data were reconstructed using conventional and spatiotemporal iterative reconstruction methods. The spatiotemporal reconstruction yielded improved image quality, defined here as a statistically significant (p
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- 2014
10. Exogenous Sorbitol Application Confers Drought Tolerance to Maize Seedlings through Up-Regulating Antioxidant System and Endogenous Sorbitol Biosynthesis.
- Author
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Li, Jun, Zhao, Meiai, Liu, Ligong, Guo, Xinmei, Pei, Yuhe, Wang, Chunxiao, and Song, Xiyun
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SORBITOL ,DROUGHT tolerance ,ALDOSE reductase ,BIOSYNTHESIS ,POLYETHYLENE glycol ,SEEDLINGS ,CORN - Abstract
This study aims to explore the impacts of exogenous sorbitol on maize seedlings under polyethylene glycol (PEG)-simulated drought stress. Six treatments were set: normal condition (CK), PEG (P), 10 mM sorbitol (10S), PEG plus 10 mM sorbitol (10SP), 100 mM sorbitol (100S) and PEG plus 100 mM sorbitol (100SP). Maize seedlings' growth under PEG-simulated drought stress was significantly inhibited and exogenous sorbitol largely alleviated this growth inhibition. The seedlings under 10SP treatment grew much better than those under P, 100S and 100SP treatments and no significant difference in growth parameters was observed between the control and 10S treatment. The seedlings treated with 10SP had higher contents of soluble sugar, soluble protein, proline, ascorbic acid (AsA), reduced glutathione (GSH), sorbitol and relative water content, higher activities of antioxidant enzymes and aldose reductase, but lower contents of malondialdehyde (MDA), H
2 O2 and relative electrical conductivity than those treated with P, 100S and 100SP. qRT-PCR analysis showed that the transcript levels of genes encoding putative aldose reductase (AR) under P treatment were significantly up-regulated in sorbitol-applied treatments. Taken together, the results demonstrated that exogenous sorbitol application conferred drought tolerance to maize seedlings by up-regulating the expression levels of AR-related genes to enhance the accumulation of intracellular osmotic substances such as sorbitol and improve antioxidant systems to tone down the damage caused by drought stress. [ABSTRACT FROM AUTHOR]- Published
- 2023
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11. Transcriptional and Metabolic Responses of Maize Shoots to Long-Term Potassium Deficiency.
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Xiong, Wangdan, Wang, Yujian, Guo, Yongzhen, Tang, Wei, Zhao, Yiran, Yang, Guofeng, Pei, Yuhe, Chen, Jingtang, Song, Xiyun, and Sun, Juan
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HYPOKALEMIA ,METABOLISM ,CROP yields ,PHENOLIC acids ,CROP growth ,SILAGE ,CORN ,SECONDARY metabolism - Abstract
Potassium is important for plant growth and crop yield. However, the effects of potassium (K
+ ) deficiency on silage maize biomass yield and how maize shoot feedback mechanisms of K+ deficiency regulate whole plant growth remains largely unknown. Here, the study aims to explore the maize growth, transcriptional and metabolic responses of shoots to long-term potassium deficiency. Under the K+ insufficiency condition, the biomass yield of silage maize decreased. The transcriptome data showed that there were 922 and 1,107 differential expression genes in DH605 and Z58, respectively. In the two varieties, 390 differently expressed overlapping genes were similarly regulated. These genes were considered the fundamental responses to K+ deficiency in maize shoots. Many stress-induced genes are involved in transport, primary and secondary metabolism, regulation, and other processes, which are involved in K+ acquisition and homeostasis. Metabolic profiles indicated that most amino acids, phenolic acids, organic acids, and alkaloids were accumulated in shoots under K+ deficiency conditions and part of the sugars and sugar alcohols also increased. It revealed that putrescine and putrescine derivatives were specifically accumulated under the K+ deficiency condition, which may play a role in the feedback regulation of shoot growth. These results confirmed the importance of K+ on silage maize production and provided a deeper insight into the responses to K+ deficiency in maize shoots. [ABSTRACT FROM AUTHOR]- Published
- 2022
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12. Application of three-class ROC analysis to task-based image quality assessment of simultaneous dual-isotope myocardial perfusion SPECT (MPS)
- Author
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He, Xin, Song, Xiyun, and Frey, Eric C.
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Diagnostic imaging -- Health aspects ,Diagnostic imaging -- Analysis ,Heart diseases -- Diagnosis ,Business ,Electronics ,Electronics and electrical industries ,Health care industry - Abstract
The diagnosis of cardiac disease using dual-isotope myocardial perfusion SPECT (MPS) is based on the defect status in both stress and rest images, and can be modeled as a three-class task of classifying patients as having no, reversible, or fixed perfusion defects. Simultaneous acquisition protocols for dual-isotope MPS imaging have gained much interest due to their advantages including perfect registration of the [sup.201]T1 and [sup.99m]Tc images in space and time, increased patient comfort, and higher clinical throughput. As a result of simultaneous acquisition, however, crosstalk contamination, where photons emitted by one isotope contribute to the image of the other isotope, degrades image quality. Minimizing the crosstalk is important in obtaining the best possible image quality. One way to minimize the crosstalk is to optimize the injected activity of the two isotopes by considering the three-class nature of the diagnostic problem. To effectively do so, we have previously developed a three-class receiver operating characteristic (ROC) analysis methodology that extends and unifies the decision theoretic, linear discriminant analysis, and psychophysical foundations of binary ROC analysis in a three-class paradigm. In this work, we applied the proposed three-class ROC methodology to the assessment of the image quality of simultaneous dual-isotope MPS imaging techniques and the determination of the optimal injected activity combination. In addition to this application, the rapid development of diagnostic imaging techniques has produced an increasing number of clinical diagnostic tasks that involve not only disease detection, but also disease characterization and are thus multiclass tasks. This paper provides a practical example of the application of the proposed three-class ROC analysis methodology to medical problems. Index Terms--Dual-isotope myocardial perfusion SPECT (MPS), simultaneous acquisition, task-based image quality assessment, three-class Hotelling observer, three-class receiver operating characteristic (ROC) analysis.
- Published
- 2008
13. ZmACY-1 Antagonistically Regulates Growth and Stress Responses in Nicotiana benthamiana.
- Author
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Chen, Dongbin, Li, Junhua, Jiao, Fuchao, Wang, Qianqian, Li, Jun, Pei, Yuhe, Zhao, Meiai, Song, Xiyun, and Guo, Xinmei
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NICOTIANA benthamiana ,PLANT breeding ,PLANT growth ,CORN ,MICROCOCCUS luteus ,DROUGHT tolerance ,ABIOTIC stress ,PLANT defenses - Abstract
Aminoacylase-1 is a zinc-binding enzyme that is important in urea cycling, ammonia scavenging, and oxidative stress responses in animals. Aminoacylase-1 (ACY-1) has been reported to play a role in resistance to pathogen infection in the model plant Nicotiana benthamiana. However, little is known about its function in plant growth and abiotic stress responses. In this study, we cloned and analyzed expression patterns of ZmACY-1 in Zea mays under different conditions. We also functionally characterized ZmACY-1 in N. benthamiana. We found that ZmACY-1 is expressed specifically in mature shoots compared with other tissues. ZmACY-1 is repressed by salt, drought, jasmonic acid, and salicylic acid, but is induced by abscisic acid and ethylene, indicating a potential role in stress responses and plant growth. The overexpression of ZmACY-1 in N. benthamiana promoted growth rate by promoting growth-related genes, such as NbEXPA1 and NbEIN2. At the same time, the overexpression of ZmACY-1 in N. benthamiana reduced tolerance to drought and salt stress. With drought and salt stress, the activity of protective enzymes, such as peroxidase (POD), superoxide dismutase (SOD), and catalase (CAT) from micrococcus lysodeikticus was lower; while the content of malondialdehyde (MDA) and relative electrolytic leakage was higher in ZmACY-1 overexpression lines than that in wild-type lines. The results indicate that ZmACY-1 plays an important role in the balance of plant growth and defense and can be used to assist plant breeding under abiotic stress conditions. [ABSTRACT FROM AUTHOR]
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- 2021
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14. Identification of Rice Blast Loss-of-Function Mutant Alleles in the Wheat Genome as a New Strategy for Wheat Blast Resistance Breeding.
- Author
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Guo, Huijun, Du, Qidi, Xie, Yongdun, Xiong, Hongchun, Zhao, Linshu, Gu, Jiayu, Zhao, Shirong, Song, Xiyun, Islam, Tofazzal, and Liu, Luxiang
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PYRICULARIA oryzae ,GENETIC variation ,SINGLE nucleotide polymorphisms ,CROPS ,RICE ,ALLELES ,ARABIDOPSIS - Abstract
Blast is caused by the host-specific lineages of the fungus Magnaporthe oryzae and is the most important destructive disease in major crop plants, including rice and wheat. The first wheat blast outbreak that occurred in Bangladesh in 2016 and the recent epidemic in Zambia were caused by the M. oryzae Triticum (MoT) pathotype, a fungal lineage belonging to M. oryzae. Although a few reported wheat cultivars show modest resistance to MoT , the patterns of genetic variation and diversity of this pathotype make it crucial to identify additional lines of resistant wheat germplasm. Nearly 40 rice blast resistant and susceptible genes have so far been cloned. Here, we used BLAST analysis to locate two rice blast susceptible genes in the wheat reference genome, bsr-d1 and bsr-k1 , and identified six identical homologous genes located on subgenomes A, B, and D. We uncovered a total of 171 single nucleotide polymorphisms (SNPs) in an ethyl methanesulfonate (EMS)-induced population, with mutation densities ranging from 1/1107.1 to 1/230.7 kb through Targeting Induced Local Lesions IN Genomes (TILLING) by sequencing. These included 81 SNPs located in exonic and promoter regions, and 13 coding alleles that are predicted to have severe effects on protein function, including two pre-mature mutants that might affect wheat blast resistance. The loss-of-function alleles identified in this study provide insights into new wheat blast resistant lines, which represent a valuable breeding resource. [ABSTRACT FROM AUTHOR]
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- 2021
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15. Comparative proteome analysis of drought-sensitive and drought-tolerant maize leaves under osmotic stress.
- Author
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Pei, Yuhe, Bai, Jianfen, Guo, Xinmei, Zhao, Meiai, Ma, Qingmei, and Song, Xiyun
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PROTEOMICS ,CORN ,TWO-dimensional electrophoresis ,OSMOTIC pressure ,POLYETHYLENE glycol ,MASS spectrometry ,CORN breeding - Abstract
Copyright of Canadian Journal of Plant Science is the property of Canadian Science Publishing and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2019
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16. Transcriptome and proteomic analyses reveal multiple differences associated with chloroplast development in the spaceflight-induced wheat albino mutant mta.
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Shi, Kui, Gu, Jiayu, Guo, Huijun, Zhao, Linshu, Xie, Yongdun, Xiong, Hongchun, Li, Junhui, Zhao, Shirong, Song, Xiyun, and Liu, Luxiang
- Subjects
PROTEOMICS ,CHLOROPLASTS ,WHEAT genetics ,BIOSYNTHESIS ,PHOTOSYNTHETIC pigments ,GENE expression ,PHOTOSYNTHESIS - Abstract
Chloroplast development is an integral part of plant survival and growth, and occurs in parallel with chlorophyll biosynthesis. However, little is known about the mechanisms underlying chloroplast development in hexaploid wheat. Here, we obtained a spaceflight-induced wheat albino mutant mta. Chloroplast ultra-structural observation showed that chloroplasts of mta exhibit abnormal morphology and distribution compared to wild type. Photosynthetic pigments content was also significantly decreased in mta. Transcriptome and chloroplast proteome profiling of mta and wild type were done to identify differentially expressed genes (DEGs) and proteins (DEPs), respectively. In total 4,588 DEGs including 1,980 up- and 2,608 down-regulated, and 48 chloroplast DEPs including 15 up- and 33 down-regulated were identified in mta. Classification of DEGs revealed that most were involved in chloroplast development, chlorophyll biosynthesis, or photosynthesis. Besides, transcription factors such as PIF3, GLK and MYB which might participate in those pathways were also identified. The correlation analysis between DEGs and DEPs revealed that the transcript-to-protein in abundance was functioned into photosynthesis and chloroplast relevant groups. Real time qPCR analysis validated that the expression level of genes encoding photosynthetic proteins was significantly decreased in mta. Together, our results suggest that the molecular mechanism for albino leaf color formation in mta is a thoroughly regulated and complicated process. The combined analysis of transcriptome and proteome afford comprehensive information for further research on chloroplast development mechanism in wheat. And spaceflight provides a potential means for mutagenesis in crop breeding. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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17. Genome-Wide Analysis of APETALA2/Ethylene-Responsive Factor (AP2/ERF) Gene Family in Barley (Hordeum vulgare L.).
- Author
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Guo, Baojian, Wei, Yafeng, Xu, Ruibin, Lin, Shen, Luan, Haiye, Lv, Chao, Zhang, Xinzhong, Song, Xiyun, and Xu, Rugen
- Subjects
PLANT genomes ,TRANSCRIPTION factors ,ABIOTIC stress ,BARLEY genetics ,BIOINFORMATICS - Abstract
APETALA2/Ethylene-Responsive Factor (AP2/ERF) gene family is plant specific transcription factor. It plays critical roles in development process, tolerance to biotic and abiotic stresses, and responses to plant hormones. However, limited data are available on the contributions of AP2/ERF gene family in barley (Hordeum vulgare L.). In the present study, 121 HvAP2/ERF genes in barley were identified by using bioinformatics methods. A total of 118 HvAP2/ERF (97.5%) genes were located on seven chromosomes. According to phylogenetic classification of AP2/ERF family in Arabidopsis, HvAP2/ERF proteins were divided into AP2 (APETALA2), RAV (Related to ABI3/VP), DREB (dehydration responsive element binding), ERF (ethylene responsive factors) and soloist sub families. The analysis of duplication events indicated that tandem repeat and segmental duplication contributed to the expansion of the AP2/ERF family in barley. HvDREB1s/2s genes displayed various expression patterns under abiotic stress and phytohormone. Taken together, the data generated in this study will be useful for genome-wide analysis to determine the precise role of the HvAP2/ERF gene during barley development, abiotic stress and phytohormone responses with the ultimate goal of improving crop production. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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18. Factors Affecting the Radiosensitivity of Hexaploid Wheat to -Irradiation: Radiosensitivity of Hexaploid Wheat (Triticum aestivum L.).
- Author
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Han, Bing, Gu, Jiayu, Zhao, Linshu, Guo, Huijun, Xie, Yongdun, Zhao, Shirong, Song, Xiyun, Han, Longzhi, and Liu, Luxiang
- Subjects
WHEAT breeding ,EFFECT of radiation on plants ,PLANT mutation breeding ,RADIATION-sensitizing agents ,ANTIOXIDANTS ,POLYMERASE chain reaction - Abstract
Understanding the radiosensitivity of plants, an important factor in crop mutation breeding programs, requires a thorough investigation of the factors that contribute to this trait. In this study, we used the highly radiosensitive wheat (Triticum aestivum L.) variety HY1 and J411, a γ-irradiation-insensitive control, which were screened from a natural population, to examine the factors affecting radiosensitivity, including free radical content and total antioxidant capacity, as well as the expression of TaKu70 and TaKu80 (DNA repair-related genes) as measured by real-time PCR. We also investigated the alternative splicing of this gene in the wild-type wheat ecotype by sequence analysis. Free radical contents and total antioxidant capacity significantly increased upon exposure of HY1 wheat to γ-irradiation in a dose-dependent manner. By contrast, in J411, the free radical contents exhibited a similar trend, but the total antioxidant capacity exhibited a downward trend upon increasing γ-irradiation. Additionally, we detected dose-dependent increases in TaKu70 and TaKu80 expression levels in γ-irradiated HY1, while in J411, TaKu70 expression levels increased, followed by a decline. We also detected alternative splicing of TaKu70 mRNA, namely, intron retention, in HY1 but not in J411. Our findings indicate that γ-irradiation induces oxidative stress and DNA damage in hexaploid wheat, resulting in growth retardation of seedlings, and they suggest that TaKu70 may play a causal role in radiosensitivity in HY1. Further studies are required to exploit these factors to improve radiosensitivity in other wheat varieties. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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19. Changes in Several Physiological and Biochemical Indices of Maize Seedling Roots Caused by Drought Stress.
- Author
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Cui Limei, Wang Xinxin, Xuan Huidong, Song Xiyun, and Pei Yuhe
- Subjects
CORN seedlings ,CORN physiology ,EFFECT of drought on corn ,SUPEROXIDE dismutase ,PEROXIDASE ,WATER shortages - Abstract
The changes in several physiological and biochemical indices of seedling roots of new maize variety Qingnong 8 were studied under the simulated drought condition with 18% PEG-6000 and water shortage. The results showed that under drought conditions, the contents of soluble protein and malonialdehy (MDA) and the activities of superoxide dismutase (SOD) and peroxidase (POD) in roots of maize seedlings significantly increased, and the increasing amplitude reduced after water shortage for 96 h. The re-watering treatment results after 48 h water shortage showed that the SOD and POD activities and the MDA content could recover to normal level, and the soluble protein content was lower than normal content. This study showed that the maize seedlings of Qingnong 8 suffered drought injury could grow normally after re-watering treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2015
20. Identification and mapping of a novel Turnip mosaic virus resistance gene Tu RBCS01 in Chinese cabbage ( Brassica rapa L.).
- Author
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Li, Qiaoyun, Zhang, Xiaoliang, Zeng, Qiang, Zhang, Zhigang, Liu, Shuantao, Pei, Yuhe, Wang, Shufen, Liu, Xianxian, Xu, Wenling, Fu, Weimin, Zhao, Zhizhong, Song, Xiyun, and Friedt, W.
- Subjects
PLANT resistance to viruses ,PLANT genetics ,TURNIP mosaic virus ,PLANT gene mapping ,GENETIC markers in plants ,PHENOTYPES ,CHINESE cabbage - Abstract
We aimed to identify Turnip mosaic virus (TuMV) resistance genes in Chinese cabbage by analysing the TuMV resistance of 43 P
1 (resistant), 88 P2 (susceptible), 26 F1 , 104 B1 (F1 × P1 ), 108 B2 (F1 × P2 ) and 509 F2 individuals. All parents and progeny populations were mechanically inoculated with TuMV-C4. Both F1 and B1 populations showed TuMV resistance. Resistant: susceptible ratios in the B2 and F2 populations were 1 : 1 and 3 : 1, respectively. TuMV resistance in P1 was controlled by a dominant gene, TuRBCS01. Bulked segregation analysis was performed to identify simple sequence repeat or insertion or deletion markers linked to TuRBCS01. Data from 108 B2 individuals with resistant or susceptible phenotypes were analysed using mapmaker/ exp 3.0. Polymorphic marker sequences were blast searched on . TuRBCS01 was found to be linked to eight markers: SAAS_ mDN192117a_159 (3.3 cM), SAAS_ mDN192117b_196 (4.0 cM), SAAS_ mDN192403_148 (13.0 cM), SAAS_ mGT084561_233 (6.8 cM), BrID10723 (3.3 cM), mBr4041 (3.3 cM), SAAS_mBr4055_194 (2.6 cM) and mBr4068 (4.0 cM). Further, TuRBCS01 was mapped to a 1.98-Mb region on chromosome A04 between markers BrID10723 and SAAS_mBr4055_194. [ABSTRACT FROM AUTHOR]- Published
- 2015
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21. Nucleotide Polymorphisms and Haplotype Diversity of RTCS Gene in China Elite Maize Inbred Lines.
- Author
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Zhang, Enying, Yang, Zefeng, Wang, Yifan, Hu, Yunyun, Song, Xiyun, and Xu, Chenwu
- Subjects
CORN genetics ,PLANT haplotypes ,GENETIC polymorphisms in plants ,TRANSCRIPTION factors ,LOCUS (Genetics) ,NUCLEOTIDE sequence ,GENETIC recombination ,PLANT diversity ,PLANTS - Abstract
The maize RTCS gene, encoding a LOB domain transcription factor, plays important roles in the initiation of embryonic seminal and postembryonic shoot-borne root. In this study, the genomic sequences of this gene in 73 China elite inbred lines, including 63 lines from 5 temperate heteroric groups and 10 tropic germplasms, were obtained, and the nucleotide polymorphisms and haplotype diversity were detected. A total of 63 sequence variants, including 44 SNPs and 19 indels, were identified at this locus, and most of them were found to be located in the regions of UTR and intron. The coding region of this gene in all tested inbred lines carried 14 haplotypes, which encoding 7 deferring RTCS proteins. Analysis of the polymorphism sites revealed that at least 6 recombination events have occurred. Among all 6 groups tested, only the P heterotic group had a much lower nucleotide diversity than the whole set, and selection analysis also revealed that only this group was under strong negative selection. However, the set of Huangzaosi and its derived lines possessed a higher nucleotide diversity than the whole set, and no selection signal were identified. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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22. Chemical Characterization, Antitumor, and Immune-Enhancing Activities of Polysaccharide from Sargassum pallidum.
- Author
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Gao, Yi, Li, Yizhen, Niu, Yunze, Ju, Hao, Chen, Ran, Li, Bin, Song, Xiyun, and Song, Lin
- Subjects
GLOBUS pallidus ,SARGASSUM ,FOURIER transform infrared spectroscopy ,CANCER cells ,POLYSACCHARIDES ,ANTINEOPLASTIC agents ,MONOSACCHARIDES - Abstract
Searching for natural products with antitumor and immune-enhancing activities is an important aspect of cancer research. Sargassum pallidum is an edible brown alga that has been used in Chinese traditional medicine for the treatment of tumors. However, the purification and application of its active components are still insufficient. In the present study, the polysaccharides from S. pallidum (SPPs) with antitumor and immune-enhancing activities were isolated and purified, and five polysaccharide fractions (SPP-0.3, SPP-0.5, SPP-0.7, SPP-1, and SPP-2) were obtained. The ratio of total saccharides, monosaccharide composition, and sulfated contents was determined, and their structures were analyzed by Fourier transform infrared spectroscopy. Moreover, bioactivity analysis showed that all five fractions had significant antitumor activity against three types of cancer cells (A549, HepG2, and B16), and can induce cancer cell apoptosis. In addition, the results indicated that SPPs can enhance the proliferation of immune cells and improve the expression levels of serum cytokines (IL-6, IL-1β, iNOS, and TNF-α). SPP-0.7 was identified as the most active fraction and selected for further purification, and its physicochemical properties and antitumor mechanism were further analyzed. Transcriptome sequencing result showed that SPP-0.7 can significantly induce the cell apoptosis, cytokine secretion, and cellular stress response process, and inhibit the normal physiological processes of cancer cells. Overall, SPPs and SPP-0.7 may be suitable for use as potential candidate agents for cancer therapy. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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23. A Comparative Analysis of the Hybrid Maize (Zea mays L.) Seed Quality in China from 2013 to 2018.
- Author
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Li, Heqin, Yue, Haiwang, Li, Li, Su, Chengfu, Zhang, Xiaowen, Liu, Jing, Yu, Zhiyang, Zhao, Guangwu, Song, Xiyun, Wang, Jianhua, and Jiang, Xuwen
- Subjects
SEED quality ,CORN ,CORN seeds ,COMPARATIVE studies ,MULTIPLE correspondence analysis (Statistics) ,CORN farming ,GERMINATION - Abstract
In this study, a comparative analysis of seed quality indicators of 1196 hybrid maize seed samples from the main maize-producing areas in China from 2013 to 2018 was carried out. The results showed that the maize seed quality in China had changed obviously in the past six years, and was mainly as follows: The percentage of samples with coated seed in 2015–2018 was higher than 62.8% in 2013 and all exceeded 97%; the sample rate of packaging according to seed number was from 24.5% in 2013 to 58.6% in 2018, and the percentage of samples which met the prescribed quality standards was from 89.2% in 2013 to 98.4% in 2018. Principal component analysis indicated that standard germination energy (SGE), standard germination percentage (SGP), cold test germination percentage (CTGP), accelerated aging test germination percentage (AATGP), and mean field seedling emergence (FSE) were the primary predictors of seed germination and seedling emergence. Meanwhile, combining other statistical methods, regression models of SGE, SGP, CTGP, and AATGP were established to predict the field seedling emergence. Furthermore, seed bulk density and total starch content were correlated with seed vigor, which needs to be further studied. This study offered a theoretical basis and data support to better understand the changes of maize quality in China over the past six years, and provided an important reference to further improve the maize seed quality in the future. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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24. Cloning and characterization of Ku70 and Ku80 homologues involved in DNA repair process in wheat (Triticum aestivum L.).
- Author
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Gu, Jiayu, Wang, Qing, Cui, Meng, Han, Bing, Guo, Huijun, Zhao, Linshu, Xie, Yongdun, Song, Xiyun, and Liu, Luxiang
- Subjects
DNA repair ,WHEAT varieties ,WHEAT genetics ,GENETIC mutation ,HETERODIMERS ,SINGLE-stranded DNA - Abstract
Error-prone repair of radiation-induced DNA double-strand breaks (DSBs) results in DNA mutation that is essential for mutation breeding. Non-homologous end joining might be the principal DSB repair mechanism in eukaryotes, which is mediated and activated by Ku protein, a heterodimer of 70 and 80 kDa subunits. In this study, on the basis of complementary DNA (cDNA), the genomic sequences of TaKu70 and TaKu80 genes in all the three genomes of wheat were characterized. Only single-nucleotide substitutions and no insertions or deletions were detected in the exons of TaKu70 and TaKu80 genes. The size of the introns exhibited a slight variation between the sequences. Yeast two-hybrid analysis demonstrated that TaKu70 and TaKu80 formed a heterodimer, and electrophoretic mobility shift assays revealed that this heterodimer bound to double-stranded DNA, but not to single-stranded DNA. The quantitative polymerase chain reaction analysis revealed that the expression of TaKu70 and TaKu80 genes was up-regulated under γ-ray irradiation in a dose-dependent manner in the seedlings of wheat. These results suggest that TaKu70 and TaKu80 form a functional heterodimer and are associated with the repair of the induced DSBs in wheat. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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25. Inheritance and development of EST-SSR marker associated with turnip mosaic virus resistance in Chinese cabbage
- Author
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Li, Qiaoyun, Tong, Haishen, Zhang, Zhigang, Zhao, Zhizhong, and Song, Xiyun
- Published
- 2011
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26. Constitutive expression of aldose reductase 1 from Zea mays exacerbates salt and drought sensitivity of transgenic Escherichia coli and Arabidopsis.
- Author
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Yang, Xiaoying, Zhu, Kaili, Guo, Xinmei, Pei, Yuhe, Zhao, Meiai, Song, Xiyun, Li, Yubin, Liu, Shutang, and Li, Jun
- Subjects
- *
ALDOSE reductase , *CORN , *ESCHERICHIA coli , *DROUGHTS , *ARABIDOPSIS , *SORBITOL - Abstract
Aldose reductases (ARs) have been considered to play important roles in sorbitol biosynthesis, cellular detoxification and stress response in some plants. ARs from maize are capable of catalyzing the oxidation of sorbitol to glucose. However, little is known how maize ARs response to abiotic stresses. In this work, we cloned one isoform of maize ARs (ZmAR1), and furthermore we analyzed the roles of ZmAR1 in response to salt and drought stresses at both prokaryotic and eukaryotic levels. ZmAR1 encodes a putative 35 kDa protein that contains 310 amino acids. Under normal growth conditions, ZmAR1 was expressed in maize seedlings, and the highest expression level was found in leaves. But when seedlings were subjected to drought or salt treatment, the expression levels of ZmAR1 were significantly reduced. The constitutive expression of ZmAR1 increased the sensitivity of recombinant E. coli cells to drought and salt stresses compared with the control. Under salt and drought stresses, transgenic Arabidopsis lines displayed lower seed germination rate, shorter seedling root length, lower chlorophyll content, lower survival rate and lower antioxidant enzyme activity than wild type (WT) plants, but transgenic Arabidopsis had higher relative conductivity, higher water loss rate, and more MDA content than WT. Meanwhile, the introduction of ZmAR1 into Arabidopsis changed the expression levels of some stress-related genes. Taken together, our results suggested that ZmAR1 might act as a negative regulator in response to salt and drought stresses in Arabidopsis by reducing the sorbitol content and modulating the expression levels of some stress-related genes. • ZmAR1 was a down-regulated gene in response to salt or drought stress. • ZmAR1 greatly decreased the tolerance ability of E. coli cells to salt and drought stresses. • ZmAR1 conferred plants hypersensitivity to salt and drought stresses by altering the expression of some stress-related genes. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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27. Identification of genetic loci associated with rough dwarf disease resistance in maize by integrating GWAS and linkage mapping.
- Author
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Zhao, Meiai, Liu, Shuangshuang, Pei, Yuhe, Jiang, Xuwen, Jaqueth, Jennifer S., Li, Bailin, Han, Jing, Jeffers, Daniel, Wang, Jiabo, and Song, Xiyun
- Subjects
- *
LOCUS (Genetics) , *MOLECULAR cloning , *GENOME-wide association studies , *CHROMOSOMES , *ALLELES , *CORN - Abstract
• In this study, 292 maize inbred lines and a F 6 linkage population were investigated across multiple environments for two years. Using the genotypes obtained from the Maize SNP 50 K chip, GWAS was performed with four analytical models. Results showed that 22 SNPs distributed on chromosomes 1, 3, 4, 6, 7 and 8 were found to be significantly associated with resistance to MRDD (P < 0.0001). The SNPs on chromosomes 3, 6 and 8 were consistent with the quantitative trait locus (QTL) regions from linkage mapping in a RIL population. Candidate genes identified by GWAS include an LRR receptor-like serine/threonine-protein kinase (GRMZM2G141288) and a DRE-binding protein (GRMZM2G006745). In addition, we performed allele variation analysis on the SNP loci selected by GWAS and linkage mapping. We found that the main alleles of the two SNP loci PZE_101170408 and PZE_106082685 on chromosome 1 were different in disease-resistant materials and disease-susceptible materials. These SNPs and genes identified provide useful information for MRDD-related gene cloning, an understanding of the underlying disease resistance mechanisms, and can be used in marker assisted breeding to develop MRDD resistant maize. Maize rough dwarf disease (MRDD) is a viral disease that causes substantial yield loss, especially in China's summer planted maize area. Discovery of resistance genes would help in developing high-yielding resistant maize hybrids. Genome-wide association studies (GWASs) have advanced quickly and are now a powerful tool for dissecting complex genetic architectures. In this study, the disease severity index (DSI) of 292 maize inbred lines and an F 6 linkage population were investigated across multiple environments for two years. Using the genotypes obtained from the Maize SNP 50K chip, a GWAS was performed with four analytical models. The results showed that 22 SNPs distributed on chromosomes 1, 3, 4, 6, 7 and 8 were significantly associated with resistance to MRDD (P<0.0001). The SNPs on chromosomes 3, 6 and 8 were consistent with the quantitative trait locus (QTL) regions from linkage mapping in an RIL population. Candidate genes identified by GWAS included an LRR receptor-like serine/threonine-protein kinase (GRMZM2G141288), and a DRE-binding protein (GRMZM2G006745). In addition, we performed an allele variation analysis of the SNP loci selected by GWAS and linkage mapping and found that the main alleles of the two SNP loci PZE_101170408 and PZE_106082685 on chromosome 1 differed in terms of disease-resistant materials and disease-susceptible materials. The identified SNPs and genes provide useful information for MRDD-related gene cloning and insights on the underlying disease resistance mechanisms, and they can be used in marker-assisted breeding to develop MRDD-resistant maize. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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28. Factors Affecting the Radiosensitivity of Hexaploid Wheat to γ-Irradiation: Radiosensitivity of Hexaploid Wheat (Triticum aestivum L.) [Corrected].
- Author
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Han B, Gu J, Zhao L, Guo H, Xie Y, Zhao S, Song X, Han L, and Liu L
- Abstract
Understanding the radiosensitivity of plants, an important factor in crop mutation breeding programs, requires a thorough investigation of the factors that contribute to this trait. In this study, we used the highly radiosensitive wheat (Triticum aestivum L.) variety HY1 and J411, a γ-irradiation-insensitive control, which were screened from a natural population, to examine the factors affecting radiosensitivity, including free radical content and total antioxidant capacity, as well as the expression of TaKu70 and TaKu80 (DNA repair-related genes) as measured by real-time PCR. We also investigated the alternative splicing of this gene in the wild-type wheat ecotype by sequence analysis. Free radical contents and total antioxidant capacity significantly increased upon exposure of HY1 wheat to γ-irradiation in a dose-dependent manner. By contrast, in J411, the free radical contents exhibited a similar trend, but the total antioxidant capacity exhibited a downward trend upon increasing γ-irradiation. Additionally, we detected dose-dependent increases in TaKu70 and TaKu80 expression levels in γ-irradiated HY1, while in J411, TaKu70 expression levels increased, followed by a decline. We also detected alternative splicing of TaKu70 mRNA, namely, intron retention, in HY1 but not in J411. Our findings indicate that γ-irradiation induces oxidative stress and DNA damage in hexaploid wheat, resulting in growth retardation of seedlings, and they suggest that TaKu70 may play a causal role in radiosensitivity in HY1. Further studies are required to exploit these factors to improve radiosensitivity in other wheat varieties., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2016
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29. Myocardial blood flow measurement with a conventional dual-head SPECT/CT with spatiotemporal iterative reconstructions - a clinical feasibility study.
- Author
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Alhassen F, Nguyen N, Bains S, Gould RG, Seo Y, Bacharach SL, Song X, Shao L, Gullberg GT, and Aparici CM
- Abstract
Cardiac single photon emission computed tomography (SPECT) cameras typically rotate too slowly around a patient to capture changes in the blood pool activity distribution and provide accurate kinetic parameters. A spatiotemporal iterative reconstruction method to overcome these limitations was investigated. Dynamic rest/stress (99m)Tc-methoxyisobutylisonitrile ((99m)Tc-MIBI) SPECT/CT was performed along with reference standard rest/stress dynamic positron emission tomography (PET/CT) (13)N-NH3 in five patients. The SPECT data were reconstructed using conventional and spatiotemporal iterative reconstruction methods. The spatiotemporal reconstruction yielded improved image quality, defined here as a statistically significant (p<0.01) 50% contrast enhancement. We did not observe a statistically significant difference between the correlations of the conventional and spatiotemporal SPECT myocardial uptake K 1 values with PET K 1 values (r=0.25, 0.88, respectively) (p<0.17). These results indicate the clinical feasibility of quantitative, dynamic SPECT/CT using (99m)Tc-MIBI and warrant further investigation. Spatiotemporal reconstruction clearly provides an advantage over a conventional reconstruction in computing K 1.
- Published
- 2013
30. Nucleotide polymorphisms and haplotype diversity of RTCS gene in China elite maize inbred lines.
- Author
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Zhang E, Yang Z, Wang Y, Hu Y, Song X, and Xu C
- Subjects
- Arabidopsis Proteins genetics, Breeding, Genetic Variation, Introns genetics, Linkage Disequilibrium, Protein Structure, Tertiary, Untranslated Regions genetics, Haplotypes, Plant Proteins genetics, Polymorphism, Single Nucleotide genetics, Transcription Factors genetics, Zea mays genetics
- Abstract
The maize RTCS gene, encoding a LOB domain transcription factor, plays important roles in the initiation of embryonic seminal and postembryonic shoot-borne root. In this study, the genomic sequences of this gene in 73 China elite inbred lines, including 63 lines from 5 temperate heteroric groups and 10 tropic germplasms, were obtained, and the nucleotide polymorphisms and haplotype diversity were detected. A total of 63 sequence variants, including 44 SNPs and 19 indels, were identified at this locus, and most of them were found to be located in the regions of UTR and intron. The coding region of this gene in all tested inbred lines carried 14 haplotypes, which encoding 7 deferring RTCS proteins. Analysis of the polymorphism sites revealed that at least 6 recombination events have occurred. Among all 6 groups tested, only the P heterotic group had a much lower nucleotide diversity than the whole set, and selection analysis also revealed that only this group was under strong negative selection. However, the set of Huangzaosi and its derived lines possessed a higher nucleotide diversity than the whole set, and no selection signal were identified.
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- 2013
- Full Text
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31. A Monte Carlo and physical phantom evaluation of quantitative In-111 SPECT.
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He B, Du Y, Song X, Segars WP, and Frey EC
- Subjects
- Algorithms, Humans, Monte Carlo Method, Organ Specificity, Phantoms, Imaging, Radiopharmaceuticals pharmacokinetics, Reproducibility of Results, Sensitivity and Specificity, Tissue Distribution, Tomography, Emission-Computed, Single-Photon instrumentation, Image Interpretation, Computer-Assisted methods, Imaging, Three-Dimensional methods, Indium Radioisotopes pharmacokinetics, Thorax diagnostic imaging, Thorax metabolism, Tomography, Emission-Computed, Single-Photon methods
- Abstract
Accurate estimation of the 3D in vivo activity distribution is important for dose estimation in targeted radionuclide therapy (TRT). Although SPECT can potentially provide such estimates, SPECT without compensation for image degrading factors is not quantitatively accurate. In this work, we evaluated quantitative SPECT (QSPECT) reconstruction methods that include compensation for various physical effects. Experimental projection data were obtained using a GE VH/Hawkeye system and an RSD torso phantom. Known activities of In-111 chloride were placed in the lungs, liver, heart, background and two spherical compartments with inner diameters of 22 mm and 34 mm. The 3D NCAT phantom with organ activities based on clinically derived In-111 ibritumomab tiuxetan data was used for the Monte Carlo (MC) simulation studies. Low-noise projection data were simulated using previously validated MC simulation methods. Fifty sets of noisy projections with realistic count levels were generated. Reconstructions were performed using the OS-EM algorithm with various combinations of attenuation (A), scatter (S), geometric response (G), collimator-detector response (D) and partial volume compensation (PVC). The QSPECT images from the various combinations of compensations were evaluated in terms of the accuracy and precision of the estimates of the total activity in each organ. For experimental data, the errors in organ activities for ADS and PVC compensation were less than 6.5% except the smaller sphere (-11.9%). For the noisy simulated data, the errors in organ activity for ADS compensation were less than 5.5% except the lungs (20.9%) and blood vessels (15.2%). Errors for other combinations of compensations were significantly (A, AS) or somewhat (AGS) larger. With added PVC, the error in the organ activities improved slightly except for the lungs (11.5%) and blood vessels (3.6%) where the improvement was more substantial. The standard deviation/mean ratios were all less than 1.5%. We conclude that QSPECT methods with appropriate compensations provided accurate In-111 organ activity estimates. For the collimator used, AGS was almost as good as ADS and may be preferable due to the reduced reconstruction time. PVC was important for small structures such as tumours or for organs in close proximity to regions with high activity. The improved quantitative accuracy from QSPECT methods has the potential for improving organ dose estimations in TRT.
- Published
- 2005
- Full Text
- View/download PDF
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