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Broadband spectral content is required to support ultrashort pulses. However this broadband content is subject to dispersion and hence the pulse duration of corresponding ultrashort pulses may be stretched accordingly. I used a commercially-available adaptive ultrashort pulse shaper featuring multiphoton intrapulse interference phase scan technology to characterise and compensate for the dispersion of the optical system in situ and conducted experimental and theoretical studies in various inter-linked topics relating to the light-matter interaction. Firstly, I examined the role of broadband ultrashort pulses in novel light-matter interacting systems involving optically co-trapped particle systems in which inter-particle light scattering occurs between optically-bound particles. Secondly, I delivered dispersion-compensated broadband ultrashort pulses in a dispersive microscope system to investigate the role of pulse duration in a biological light-matter interaction involving laser-induced cell membrane permeabilisation through linear and nonlinear optical absorption. Finally, I examined some of the propagation characteristics of broadband ultrashort pulse propagation using a computer-controlled spatial light modulator. The propagation characteristics of ultrashort pulses is of paramount importance for defining the light-matter interaction in systems. The ability to control ultrashort pulse propagation by using adaptive dispersion compensation enables chirp-free ultrashort pulses to be used in experiments requiring the shortest possible pulses for a specified spectral bandwidth. Ultrashort pulsed beams may be configured to provide high peak intensities over long propagation lengths, for example, using novel beam shapes such as Bessel-type beams, which has applications in biological light-matter interactions including phototransfection based on laser-induced cell membrane permeabilisation. The need for precise positioning of the beam focus on the cell membrane becomes less strenuous by virtue of the spatial properties of the Bessel beam. Dispersion compensation can be used to control the temporal properties of ultrashort pulses thus permitting, for example, a high peak intensity to be maintained along the length of a Bessel beam, thereby reducing the pulse energy required to permeabilise the cell membrane and potentially reduce damage therein.

Plants and bacteria both have specialized light-harvesting pigment-protein complexes, composed of a network of chromophores encompassed by a protein scaffold, that are involved in photosynthesis. While chromophore, as well as protein, composition and arrangement vary in these light-harvesting complexes, chromophores transfer energy as molecular excitation energy through their complex multi-chromophoric network with near perfect efficiency. Understanding the efficiency of this excitation energy transfer process has been the focus of many interdisciplinary studies. By elucidating the mechanisms involved in efficient excitation energy transfer in biological systems, we are able to guide the design of novel organic materials for their application in photovoltaic systems. Interdisciplinary studies of light-harvesting biological systems leverage advanced spectroscopic techniques and theoretical models to help explain the interaction be- tween excited electronic states. Difficulties in assigning the origin of spectral features in spectroscopy experiments arise from both homogeneous and inhomogeneous effects. Various computational studies have been able to provide theoretical models that help disentangle these effects and provide insight into the origin of some these spectral features. In this work, we present a computational approach that is used to calculate an ensemble of model Hamiltonians for a light-harvesting pigment-protein complex found in algae. To verify the reliability of our model, we compare various computed spec- tra with experimental measurements. Next, we extend our computational approach for parameterizing an ensemble of Hamiltonians for two configurationally unique or- ganic dimers. Finally, we examine the error of some of the approximations made while partitioning “system” and “bath” degrees of freedom when computing molecu- lar properties. Using these methods we are able to provide mechanistic interpretations and explanations of spectral signatures observed in various linear and nonlinear ex- perimental spectra.