21 results on '"Calogero R."'
Search Results
2. Community-driven ELIXIR activities in single-cell omics [version 1; peer review: awaiting peer review]
- Author
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Czarnewski, P., Mahfouz, Ahmed, Calogero, R. A., Palagi, P. M., Portell-Silva, L., Gonzalez-Uriarte, A., Soneson, C., Burdett, T., Szomolay, B., Videm, P., Hotz, H. R., Papatheodorou, I., Hancock, J. M., Gruening, B., Haerty, W., Krause, Roland, Capella-Gutierrez, S., Lesko?ek, B., Alessandri, L., Arigoni, M., Rezen, T., Botzki, A., Ferk, P., Lindvall, J., Heil, Katharina, Ishaque, N., Korpelainen, E., Czarnewski, P., Mahfouz, Ahmed, Calogero, R. A., Palagi, P. M., Portell-Silva, L., Gonzalez-Uriarte, A., Soneson, C., Burdett, T., Szomolay, B., Videm, P., Hotz, H. R., Papatheodorou, I., Hancock, J. M., Gruening, B., Haerty, W., Krause, Roland, Capella-Gutierrez, S., Lesko?ek, B., Alessandri, L., Arigoni, M., Rezen, T., Botzki, A., Ferk, P., Lindvall, J., Heil, Katharina, Ishaque, N., and Korpelainen, E.
- Published
- 2022
3. miR-129-5p: A key factor and therapeutic target in amyotrophic lateral sclerosis
- Author
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Loffreda, A, Nizzardo, M, Arosio, A, Ruepp, M, Calogero, R, Volinia, S, Galasso, M, Bendotti, C, Ferrarese, C, Lunetta, C, Rizzuti, M, Ronchi, A, Mühlemann, O, Tremolizzo, L, Corti, S, Barabino, S, Loffreda, Alessia, Nizzardo, Monica, Arosio, Alessandro, Ruepp, Marc-David, Calogero, Raffaele A, Volinia, Stefano, Galasso, Marco, Bendotti, Caterina, Ferrarese, Carlo, Lunetta, Christian, Rizzuti, Mafalda, Ronchi, Antonella, Mühlemann, Oliver, Tremolizzo, Lucio, Corti, Stefania, Barabino, Silvia M L, Loffreda, A, Nizzardo, M, Arosio, A, Ruepp, M, Calogero, R, Volinia, S, Galasso, M, Bendotti, C, Ferrarese, C, Lunetta, C, Rizzuti, M, Ronchi, A, Mühlemann, O, Tremolizzo, L, Corti, S, Barabino, S, Loffreda, Alessia, Nizzardo, Monica, Arosio, Alessandro, Ruepp, Marc-David, Calogero, Raffaele A, Volinia, Stefano, Galasso, Marco, Bendotti, Caterina, Ferrarese, Carlo, Lunetta, Christian, Rizzuti, Mafalda, Ronchi, Antonella, Mühlemann, Oliver, Tremolizzo, Lucio, Corti, Stefania, and Barabino, Silvia M L
- Abstract
Amyotrophic lateral sclerosis (ALS) is a relentless and fatal neurological disease characterized by the selective degeneration of motor neurons. No effective therapy is available for this disease. Several lines of evidence indicate that alteration of RNA metabolism, including microRNA (miRNA) processing, is a relevant pathogenetic factor and a possible therapeutic target for ALS. Here, we showed that the abundance of components in the miRNA processing machinery is altered in a SOD1-linked cellular model, suggesting consequent dysregulation of miRNA biogenesis. Indeed, high-throughput sequencing of the small RNA fraction showed that among the altered miRNAs, miR-129-5p was increased in different models of SOD1-linked ALS and in peripheral blood cells of sporadic ALS patients. We demonstrated that miR-129-5p upregulation causes the downregulation of one of its targets: the RNA-binding protein ELAVL4/HuD. ELAVL4/HuD is predominantly expressed in neurons, where it controls several key neuronal mRNAs. Overexpression of pre-miR-129-1 inhibited neurite outgrowth and differentiation via HuD silencing in vitro, while its inhibition with an antagomir rescued the phenotype. Remarkably, we showed that administration of an antisense oligonucleotide (ASO) inhibitor of miR-129-5p to an ALS animal model, SOD1 (G93A) mice, result in a significant increase in survival and improved the neuromuscular phenotype in treated mice. These results identify miR-129-5p as a therapeutic target that is amenable to ASO modulation for the treatment of ALS patients.
- Published
- 2020
4. Looking to the future : Priorities for translating research to impact in the field of appearance and body image
- Author
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Atkinson, MJ, Stock, NM, Alleva, JM, Jankowski, GS, Piran, N, Riley, S, Calogero, R, Clarke, A, Rumsey, N, Slater, A, Diedrichs, PC, Williamson, H, Atkinson, MJ, Stock, NM, Alleva, JM, Jankowski, GS, Piran, N, Riley, S, Calogero, R, Clarke, A, Rumsey, N, Slater, A, Diedrichs, PC, and Williamson, H
- Abstract
© 2019 Elsevier Ltd The field of body image and appearance research and practice is progressing; however, there is still work to be done to ensure broad societal impact. This article consolidates reflections from a range of established and early career experts in the field of appearance and body image, with a focus on stimulating and guiding future agenda setting and translation from research to impact. We conducted a thematic analysis of transcripts from nine recorded 5-minute presentations, delivered by researchers and clinicians as part of a special invited presentation session at a biennial international conference, ‘Appearance Matters,’ in the UK. Four themes were identified: Moving Beyond the Individual; Consolidation and Collaboration; Commitment to Implementation; and Positive and Protective Frameworks. These themes are discussed alongside recommendations for researchers and practitioners working in these fields to advance research, advocacy, and impact outside of academia.
- Published
- 2019
5. Looking to the future : Priorities for translating research to impact in the field of appearance and body image
- Author
-
Atkinson, MJ, Stock, NM, Alleva, JM, Jankowski, GS, Piran, N, Riley, S, Calogero, R, Clarke, A, Rumsey, N, Slater, A, Diedrichs, PC, Williamson, H, Atkinson, MJ, Stock, NM, Alleva, JM, Jankowski, GS, Piran, N, Riley, S, Calogero, R, Clarke, A, Rumsey, N, Slater, A, Diedrichs, PC, and Williamson, H
- Abstract
© 2019 Elsevier Ltd The field of body image and appearance research and practice is progressing; however, there is still work to be done to ensure broad societal impact. This article consolidates reflections from a range of established and early career experts in the field of appearance and body image, with a focus on stimulating and guiding future agenda setting and translation from research to impact. We conducted a thematic analysis of transcripts from nine recorded 5-minute presentations, delivered by researchers and clinicians as part of a special invited presentation session at a biennial international conference, ‘Appearance Matters,’ in the UK. Four themes were identified: Moving Beyond the Individual; Consolidation and Collaboration; Commitment to Implementation; and Positive and Protective Frameworks. These themes are discussed alongside recommendations for researchers and practitioners working in these fields to advance research, advocacy, and impact outside of academia.
- Published
- 2019
6. SETD2 and histone H3 lysine 36 methylation deficiency in advanced systemic mastocytosis
- Author
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Martinelli, G, Mancini, M, De Benedittis, C, Rondoni, M, Papayannidis, C, Manfrini, M, Meggendorfer, M, Calogero, R, Guadagnuolo, V, Fontana, M. C, Bavaro, L, Padella, A, Zago, E, Pagano, L, Zanotti, R, Scaffidi, L, Specchia, G, Albano, F, Merante, S, Elena, C, Savini, P, Gangemi, D, Tosi, P, Ciceri, F, Poletti, G, Riccioni, L, Morigi, F, Delledonne, M, Haferlach, T, Cavo, M, Valent, P, Soverini, S., Pagano, L (ORCID:0000-0001-8287-928X), Martinelli, G, Mancini, M, De Benedittis, C, Rondoni, M, Papayannidis, C, Manfrini, M, Meggendorfer, M, Calogero, R, Guadagnuolo, V, Fontana, M. C, Bavaro, L, Padella, A, Zago, E, Pagano, L, Zanotti, R, Scaffidi, L, Specchia, G, Albano, F, Merante, S, Elena, C, Savini, P, Gangemi, D, Tosi, P, Ciceri, F, Poletti, G, Riccioni, L, Morigi, F, Delledonne, M, Haferlach, T, Cavo, M, Valent, P, Soverini, S., and Pagano, L (ORCID:0000-0001-8287-928X)
- Abstract
The molecular basis of advanced systemic mastocytosis (SM) is not fully understood and despite novel therapies the prognosis remains dismal. Exome sequencing of an index-patient with mast cell leukemia (MCL) uncovered biallelic loss-of-function mutations in the SETD2 histone methyltransferase gene. Copy-neutral loss-of-heterozygosity at 3p21.3 (where SETD2 maps) was subsequently found in SM patients and prompted us to undertake an in-depth analysis of SETD2 copy number, mutation status, transcript expression and methylation levels, as well as functional studies in the HMC-1 cell line and in a validation cohort of 57 additional cases with SM, including MCL, aggressive SM and indolent SM. Reduced or no SETD2 protein expression-and consequently, H3K36 trimethylation-was found in all cases and inversely correlated with disease aggressiveness. Proteasome inhibition rescued SETD2 expression and H3K36 trimethylation and resulted in marked accumulation of ubiquitinated SETD2 in SETD2-deficient patients but not in patients with near-normal SETD2 expression. Bortezomib and, to a lesser extent, AZD1775 alone or in combination with midostaurin induced apoptosis and reduced clonogenic growth of HMC-1 cells and of neoplastic mast cells from advanced SM patients. Our findings may have implications for prognostication of SM patients and for the development of improved treatment approaches in advanced SM.
- Published
- 2018
7. Oxidative stress controls the choice of alternative last exons via a Brahma-BRCA1-CstF pathway
- Author
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Fontana, G, Rigamonti, A, Lenzken, S, Filosa, G, Alvarez, R, Calogero, R, Bianchi, M, Barabino, S, FONTANA, GABRIELE ALESSANDRO, RIGAMONTI, AURORA, LENZKEN, SILVIA CAROLINA, FILOSA, GIUSEPPE, ALVAREZ, REINALDO, BARABINO, SILVIA MARIA LUISA, Fontana, G, Rigamonti, A, Lenzken, S, Filosa, G, Alvarez, R, Calogero, R, Bianchi, M, Barabino, S, FONTANA, GABRIELE ALESSANDRO, RIGAMONTI, AURORA, LENZKEN, SILVIA CAROLINA, FILOSA, GIUSEPPE, ALVAREZ, REINALDO, and BARABINO, SILVIA MARIA LUISA
- Abstract
Alternative splicing of terminal exons increases transcript and protein diversity. How physiological and pathological stimuli regulate the choice between alternative terminal exons is, however, largely unknown. Here, we show that Brahma (BRM), the ATPase subunit of the hSWI/SNF chromatin-remodeling complex interacts with BRCA1/BARD1, which ubiquitinates the 50 kDa subunit of the 3′ end processing factor CstF. This results in the inhibition of transcript cleavage at the proximal poly(A) site and a shift towards inclusion of the distal terminal exon. Upon oxidative stress, BRM is depleted, cleavage inhibition is released, and inclusion of the proximal last exon is favoored. Our findings elucidate a novel regulatory mechanism, distinct from the modulation of transcription elongation by BRM that controls alternative splicing of internal exons.
- Published
- 2017
8. A novel infection- and inflammation-associated molecular signature in peripheral blood of myasthenia gravis patients
- Author
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Barzago, C, Lum, J, Cavalcante, P, Srinivasan, K, Faggiani, E, Camera, G, Bonanno, S, Andreetta, F, Antozzi, C, Baggi, F, Calogero, R, Bernasconi, P, Mantegazza, R, Mori, L, Zolezzi, F, Zolezzi, F., BONANNO, SILVIA, Barzago, C, Lum, J, Cavalcante, P, Srinivasan, K, Faggiani, E, Camera, G, Bonanno, S, Andreetta, F, Antozzi, C, Baggi, F, Calogero, R, Bernasconi, P, Mantegazza, R, Mori, L, Zolezzi, F, Zolezzi, F., and BONANNO, SILVIA
- Abstract
Myasthenia gravis (MG) is a T-cell dependent autoimmune disorder of the neuromuscular junction, characterised by muscle weakness and fatigability. Autoimmunity is thought to initiate in the thymus of acetylcholine receptor (AChR)-positive MG patients; however, the molecular mechanisms linking intra-thymic MG pathogenesis with autoreactivity via the circulation to the muscle target organ are poorly understood. Using whole-transcriptome sequencing, we compared the transcriptional profile of peripheral blood mononuclear cells from AChR-early onset MG (AChR-EOMG) patients with healthy controls: 178 coding transcripts and 229 long non-coding RNAs, including 11 pre-miRNAs, were differentially expressed. Among the 178 coding transcripts, 128 were annotated of which 17% were associated with the ‘infectious disease’ functional category and 46% with ‘inflammatory disease’ and ‘inflammatory response-associated’ categories. Validation of selected transcripts by qPCR indicated that of the infectious disease-related transcripts, ETF1, NFKB2, PLK3, and PPP1R15A were upregulated, whereas CLC and IL4 were downregulated in AChR-EOMG patients; in the ‘inflammatory’ categories, ABCA1, FUS, and RELB were upregulated, suggesting a contribution of these molecules to immunological dysfunctions in MG. Data selection and validation were also based on predicted microRNA-mRNA interactions. We found that miR-612, miR-3654, and miR-3651 were increased, whereas miR-612-putative AKAp12 and HRH4 targets and the miR-3651-putative CRISP3 target were downregulated in AChR-EOMG, also suggesting altered immunoregulation. Our findings reveal a novel peripheral molecular signature in AChR-EOMG, reflecting a critical involvement of inflammatory- and infectious disease-related immune responses in disease pathogenesis.
- Published
- 2016
9. The Social Appearance Anxiety Scale in Italian Adolescent Populations: Construct Validation and Group Discrimination in Community and Clinical Eating Disorders Samples
- Author
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Dakanalis, A, Carra', G, Calogero, R, Zanetti, M, Volpato, C, Riva, G, Clerici, M, Cipresso, P, DAKANALIS, ANTONIOS, CARRA', GIUSEPPE, VOLPATO, CHIARA, CLERICI, MASSIMO, CIPRESSO, PIETRO, Dakanalis, A, Carra', G, Calogero, R, Zanetti, M, Volpato, C, Riva, G, Clerici, M, Cipresso, P, DAKANALIS, ANTONIOS, CARRA', GIUSEPPE, VOLPATO, CHIARA, CLERICI, MASSIMO, and CIPRESSO, PIETRO
- Abstract
Anxiety in situations where one’s overall appearance (including body shape) may be negatively evaluated is hypothesized to play a central role in Eating Disorders (EDs) and in their co-occurrence with Social Anxiety Disorder (SAD). Three studies were conducted among community (N = 1995) and clinical (N = 703) ED samples of 11- to 18-year-old Italian girls and boys to (a) evaluate the psychometric qualities and measurement equivalence/invariance (ME/I) of the Social Appearance Anxiety (SAA) Scale (SAAS) and (b) determine to what extent SAA or other situational domains of social anxiety related to EDs distinguish adolescents with an ED only from those with SAD. Results upheld the one-factor structure and ME/I of the SAAS across samples, gender, age categories, and diagnostic status (i.e., ED participants with and without comorbid SAD). The SAAS demonstrated high internal consistency and 3-week test–retest reliability. The strength of the inter-relationships between SAAS and measures of body image, teasing about appearance, ED symptoms, depression, social anxiety, avoidance, and distress, as well as the ability of SAAS to discriminate community adolescents with high and low levels of ED symptoms and community participants from ED participants provided construct validity evidence. Only SAA strongly differentiated adolescents with any ED from those with comorbid SAD (23.2 %). Latent mean comparisons across all study groups were performed and discussed.
- Published
- 2016
10. The developmental effects of media-ideal internalization and self-objectification processes on adolescents’ negative body-feelings, dietary restraint, and binge eating
- Author
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Dakanalis, A, Carra', G, Calogero, R, Fida, R, Clerici, M, Zanetti, M, Riva, G, DAKANALIS, ANTONIOS, CARRA', GIUSEPPE, CLERICI, MASSIMO, Riva, G., Dakanalis, A, Carra', G, Calogero, R, Fida, R, Clerici, M, Zanetti, M, Riva, G, DAKANALIS, ANTONIOS, CARRA', GIUSEPPE, CLERICI, MASSIMO, and Riva, G.
- Abstract
Despite accumulated experimental evidence of the negative effects of exposure to media-idealized images, the degree to which body image, and eating related disturbances are caused by media portrayals of gendered beauty ideals remains controversial. On the basis of the most up-to-date meta-analysis of experimental studies indicating that media-idealized images have the most harmful and substantial impact on vulnerable individuals regardless of gender (i.e., “internalizers” and “self-objectifiers”), the current longitudinal study examined the direct and mediated links posited in objectification theory among media-ideal internalization, self-objectification, shame and anxiety surrounding the body and appearance, dietary restraint, and binge eating. Data collected from 685 adolescents aged between 14 and 15 at baseline (47 % males), who were interviewed and completed standardized measures annually over a 3-year period, were analyzed using a structural equation modeling approach. Results indicated that media-ideal internalization predicted later thinking and scrutinizing of one’s body from an external observer’s standpoint (or self-objectification), which then predicted later negative emotional experiences related to one’s body and appearance. In turn, these negative emotional experiences predicted subsequent dietary restraint and binge eating, and each of these core features of eating disorders influenced each other. Differences in the strength of these associations across gender were not observed, and all indirect effects were significant. The study provides valuable information about how the cultural values embodied by gendered beauty ideals negatively influence adolescents’ feelings, thoughts and behaviors regarding their own body, and on the complex processes involved in disordered eating. Practical implications are discussed.
- Published
- 2015
11. Testing the cognitive-behavioural maintenance models across DSM-5 bulimic-type eating disorder diagnostic groups: a multi-centre study
- Author
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Dakanalis, A, Carra', G, Calogero, R, Zanetti, M, Gaudio, S, Caccialanza, R, Riva, G, Clerici, M, DAKANALIS, ANTONIOS, CARRA', GIUSEPPE, CLERICI, MASSIMO, Dakanalis, A, Carra', G, Calogero, R, Zanetti, M, Gaudio, S, Caccialanza, R, Riva, G, Clerici, M, DAKANALIS, ANTONIOS, CARRA', GIUSEPPE, and CLERICI, MASSIMO
- Abstract
The original cognitive-behavioural (CB) model of bulimia nervosa, which provided the basis for the widely used CB therapy, proposed that specific dysfunctional cognitions and behaviours maintain the disorder. However, amongst treatment completers, only 40–50 % have a full and lasting response. The enhanced CB model (CB-E), upon which the enhanced version of the CB treatment was based, extended the original approach by including four additional maintenance factors. This study evaluated and compared both CB models in a large clinical treatment seeking sample (N = 679), applying both DSM-IV and DSM-5 criteria for bulimic-type eating disorders. Application of the DSM-5 criteria reduced the number of cases of DSM-IV bulimic-type eating disorders not otherwise specified to 29.6 %. Structural equation modelling analysis indicated that (a) although both models provided a good fit to the data, the CB-E model accounted for a greater proportion of variance in eating-disordered behaviours than the original one, (b) interpersonal problems, clinical perfectionism and low self-esteem were indirectly associated with dietary restraint through over-evaluation of shape and weight, (c) interpersonal problems and mood intolerance were directly linked to binge eating, whereas restraint only indirectly affected binge eating through mood intolerance, suggesting that factors other than restraint may play a more critical role in the maintenance of binge eating. In terms of strength of the associations, differences across DSM-5 bulimic-type eating disorder diagnostic groups were not observed. The results are discussed with reference to theory and research, including neurobiological findings and recent hypotheses.
- Published
- 2015
12. Quadrupolar XMCD at the Fe K -edge in Fe phthalocyanine film on Au: Insight into the magnetic ground state
- Author
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Department of Energy (US), European Commission, Diputación General de Aragón, Ministerio de Economía y Competitividad (España), Bartolomé, Juan, Bartolomé, Fernando, Figueroa, A. I., Bunău, Oana, Schuller, Ivan K., Wilhelm, F., Rogalev, A., Natoli, Calogero R., Department of Energy (US), European Commission, Diputación General de Aragón, Ministerio de Economía y Competitividad (España), Bartolomé, Juan, Bartolomé, Fernando, Figueroa, A. I., Bunău, Oana, Schuller, Ivan K., Wilhelm, F., Rogalev, A., and Natoli, Calogero R.
- Abstract
The observation of an anomalous quadrupolar signal in x-ray magnetic circular dichroism (XMCD) at the Fe K-edge of iron phthalocyanine (FePc) films is reported. All ground states previously suggested for FePc are incompatible with the experimental data. Based on ab initio molecular orbital multiplet calculations of the isolated FePc molecule, we propose a model for the magnetic ground state of the FePc film that explains the XMCD data and reproduces the observed values of the orbital moments in the perpendicular and planar directions.
- Published
- 2015
13. Molecular tilting and columnar stacking of Fe phthalocyanine thin films on Au(111)
- Author
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National Science Foundation (US), Department of Energy (US), European Commission, Ministerio de Economía y Competitividad (España), Diputación General de Aragón, Bartolomé, Fernando, Bunău, Oana, García, L. M., Natoli, Calogero R., Piantek, Marten, Schuller, Ivan K., Wilhelm, F., Rogalev, A., Bartolomé, Juan, National Science Foundation (US), Department of Energy (US), European Commission, Ministerio de Economía y Competitividad (España), Diputación General de Aragón, Bartolomé, Fernando, Bunău, Oana, García, L. M., Natoli, Calogero R., Piantek, Marten, Schuller, Ivan K., Wilhelm, F., Rogalev, A., and Bartolomé, Juan
- Abstract
Scanning tunneling microscopy and x-ray absorption spectroscopic results at the Fe K edge of Fe phthalocyanine (FePc) thin films grown on Au substrates, together with theoretical calculations, allow us to refine the structure of the film. In particular, we show that the columnar stacking of the FePc molecules is different from that found in bulk ¿ and ß phases. Moreover, the molecules do not lay parallel to the surface of the substrate. These structural findings are relevant to understand magnetism of FePc films.
- Published
- 2015
14. The developmental effects of media-ideal internalization and self-objectification processes on adolescents’ negative body-feelings, dietary restraint, and binge eating
- Author
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Dakanalis, Antonio, Carrà, G, Calogero, R, Fida, R, Clerici, M, Zanetti, M, Riva, Giuseppe, Riva, Giuseppe (ORCID:0000-0003-3657-106X), Dakanalis, Antonio, Carrà, G, Calogero, R, Fida, R, Clerici, M, Zanetti, M, Riva, Giuseppe, and Riva, Giuseppe (ORCID:0000-0003-3657-106X)
- Abstract
Despite accumulated experimental evidence of the negative effects of exposure to media-idealized images, the degree to which body image, and eating related disturbances are caused by media portrayals of gendered beauty ideals remains controversial. On the basis of the most up-to-date meta-analysis of experimental studies indicating that media-idealized images have the most harmful and substantial impact on vulnerable individuals regardless of gender (i.e., “internalizers” and “self-objectifiers”), the current longitudinal study examined the direct and mediated links posited in objectification theory among media-ideal internalization, self-objectification, shame and anxiety surrounding the body and appearance, dietary restraint, and binge eating. Data collected from 685 adolescents aged between 14 and 15 at baseline (47 % males), who were interviewed and completed standardized measures annually over a 3-year period, were analyzed using a structural equation modeling approach. Results indicated that media-ideal internalization predicted later thinking and scrutinizing of one’s body from an external observer’s standpoint (or self-objectification), which then predicted later negative emotional experiences related to one’s body and appearance. In turn, these negative emotional experiences predicted subsequent dietary restraint and binge eating, and each of these core features of eating disorders influenced each other. Differences in the strength of these associations across gender were not observed, and all indirect effects were significant. The study provides valuable information about how the cultural values embodied by gendered beauty ideals negatively influence adolescents’ feelings, thoughts and behaviors regarding their own body, and on the complex processes involved in disordered eating. Practical implications are discussed.
- Published
- 2014
15. Prdm5 suppresses Apc(Min)-driven intestinal adenomas and regulates monoacylglycerol lipase expression
- Author
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Galli, G G, Multhaupt, H A, Carrara, M, Honnens de Lichtenberg, Kristian, Christensen, I B J, Linnemann, D, Santoni-Rugiu, E, Calogero, R A, Lund, A H, Galli, G G, Multhaupt, H A, Carrara, M, Honnens de Lichtenberg, Kristian, Christensen, I B J, Linnemann, D, Santoni-Rugiu, E, Calogero, R A, and Lund, A H
- Abstract
PRDM proteins are tissue-specific transcription factors often deregulated in diseases, particularly in cancer where different members have been found to act as oncogenes or tumor suppressors. PRDM5 is a poorly characterized member of the PRDM family for which several studies have reported a high frequency of promoter hypermethylation in cancer types of gastrointestinal origin. We report here the characterization of Prdm5 knockout mice in the context of intestinal carcinogenesis. We demonstrate that loss of Prdm5 increases the number of adenomas throughout the murine small intestine on an Apc(Min) background. By using the genome-wide ChIP-seq (chromatin immunoprecipitation (ChIP) followed by DNA sequencing) and transcriptome analyses we identify loci encoding proteins involved in metabolic processes as prominent PRDM5 targets and characterize monoacylglycerol lipase (Mgll) as a direct PRDM5 target in human colon cancer cells and in Prdm5 mutant mouse intestines. Moreover, we report the downregulation of PRDM5 protein expression in human colon neoplastic lesions. In summary, our data provide the first causal link between Prdm5 loss and intestinal carcinogenesis, and uncover an extensive and novel PRDM5 target repertoire likely facilitating the tumor-suppressive functions of PRDM5.Oncogene advance online publication, 22 July 2013; doi:10.1038/onc.2013.283.
- Published
- 2013
16. Origin of incommensurate satellite reflections on TbMnO3 by resonant x-ray scattering
- Author
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European Synchrotron Radiation Facility, Ministerio de Ciencia e Innovación (España), Diputación General de Aragón, Cuartero, Vera, García, Joaquín, Subías, G., Herrero Martín, Javier, Blasco, Javier, Natoli, Calogero R., European Synchrotron Radiation Facility, Ministerio de Ciencia e Innovación (España), Diputación General de Aragón, Cuartero, Vera, García, Joaquín, Subías, G., Herrero Martín, Javier, Blasco, Javier, and Natoli, Calogero R.
- Abstract
We have performed a deep spectroscopic study of incommensurate satellite reflections (h, k, l) ± (0,0.278, 0) on a TbMnO3 single crystal in order to shed light on its physical origin. Resonant x-ray scattering experiments at the Mn K-edge and Tb L3-edge have been performed at different temperatures and azimuthal angles, analyzing the outgoing light polarization. Our experimental results agree with a magnetic origin for A and C-type reflections, while F and G-type have the hallmarks of anisotropic tensor susceptibility (ATS) reflections, so that they come purely from the structural modulation.
- Published
- 2013
17. Prdm5 suppresses Apc(Min)-driven intestinal adenomas and regulates monoacylglycerol lipase expression
- Author
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Galli, G G, Multhaupt, H A, Carrara, M, Honnens de Lichtenberg, Kristian, Christensen, I B J, Linnemann, D, Santoni-Rugiu, E, Calogero, R A, Lund, A H, Galli, G G, Multhaupt, H A, Carrara, M, Honnens de Lichtenberg, Kristian, Christensen, I B J, Linnemann, D, Santoni-Rugiu, E, Calogero, R A, and Lund, A H
- Abstract
PRDM proteins are tissue-specific transcription factors often deregulated in diseases, particularly in cancer where different members have been found to act as oncogenes or tumor suppressors. PRDM5 is a poorly characterized member of the PRDM family for which several studies have reported a high frequency of promoter hypermethylation in cancer types of gastrointestinal origin. We report here the characterization of Prdm5 knockout mice in the context of intestinal carcinogenesis. We demonstrate that loss of Prdm5 increases the number of adenomas throughout the murine small intestine on an Apc(Min) background. By using the genome-wide ChIP-seq (chromatin immunoprecipitation (ChIP) followed by DNA sequencing) and transcriptome analyses we identify loci encoding proteins involved in metabolic processes as prominent PRDM5 targets and characterize monoacylglycerol lipase (Mgll) as a direct PRDM5 target in human colon cancer cells and in Prdm5 mutant mouse intestines. Moreover, we report the downregulation of PRDM5 protein expression in human colon neoplastic lesions. In summary, our data provide the first causal link between Prdm5 loss and intestinal carcinogenesis, and uncover an extensive and novel PRDM5 target repertoire likely facilitating the tumor-suppressive functions of PRDM5.Oncogene advance online publication, 22 July 2013; doi:10.1038/onc.2013.283.
- Published
- 2013
18. Mutant SOD1 and mitochondrial damage alter expression and splicing of genes controlling neuritogenesis in models of neurodegeneration
- Author
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Lenzken, S, Romeo, V, Zolezzi, F, Corsero, F, Lamorte, G, Bonanno, D, Biancolini, D, Cozzolino, M, Maracchioni, A, Sanges, R, Achsel, T, Carrì, M, Calogero, R, Barabino, S, LENZKEN, SILVIA CAROLINA, Carrì, MT, Calogero, RA, BARABINO, SILVIA MARIA LUISA, Lenzken, S, Romeo, V, Zolezzi, F, Corsero, F, Lamorte, G, Bonanno, D, Biancolini, D, Cozzolino, M, Maracchioni, A, Sanges, R, Achsel, T, Carrì, M, Calogero, R, Barabino, S, LENZKEN, SILVIA CAROLINA, Carrì, MT, Calogero, RA, and BARABINO, SILVIA MARIA LUISA
- Abstract
Mitochondrial dysfunction has been implicated in the pathogenesis of a number of neurodegenerative disorders including Parkinson, Alzheimer, and Amyotrophic Lateral Sclerosis (ALS). In addition, aberrant mRNA splicing has been documented in neurodegeneration. To characterize the cellular response to mitochondrial perturbations at the level of gene expression and alternative pre-mRNA splicing we used splicing-sensitive microarrays to profile human neuroblastoma SH-SY5Y cells treated with paraquat, a neurotoxic herbicide that induces the formation of reactive oxygen species and causes mitochondrial damage in animal models, and SH-SY5Y cells stably expressing the mutant G93A-SOD1 protein, one of the genetic causes of ALS. In both models we identified a common set of genes whose expression and alternative splicing are deregulated. Pathway analysis of the deregulated genes revealed enrichment in genes involved in neuritogenesis, axon growth and guidance, and synaptogenesis. Alterations in transcription and pre-mRNA splicing of candidate genes were confirmed experimentally in the cell line models as well as in brain and spinal cord of transgenic mice carrying the G93A-SOD1 mutation. Our findings expand the realm of the pathways implicated in neurodegeneration and suggest that alterations of axonal function may descend directly from mitochondrial damage. © 2011 Wiley-Liss, Inc.
- Published
- 2011
19. Origin of the pre-peak features in the oxygen K-edge x-ray absorption spectra of LaFeO3 and LaMnO3 studied by Ga substitution of the transition metal ion
- Author
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Lafuerza, Sara, Subías, G., García, Joaquín, Matteo, S. di, Blasco, Javier, Cuartero, Jesús, Natoli, Calogero R., Lafuerza, Sara, Subías, G., García, Joaquín, Matteo, S. di, Blasco, Javier, Cuartero, Jesús, and Natoli, Calogero R.
- Abstract
We report on experimental oxygen K-edge x-ray absorption near edge structure (XANES) spectra of the LaFe1 - xGaxO3 and LaMn1 - xGaxO3 series. Transition metal substitution by the 3d full shell Ga atom is mainly reflected in a systematic decrease of the pre-edge structures in the XANES spectra of the two series. This result shows that the associated states originate from the hybridization of oxygen 2p and unoccupied Fe (or Mn) 3d states. In order to gain insight into the states associated with the pre-edge spectral features, we have performed ab initio theoretical calculations based on multiple scattering theory. Simulations with variable cluster size and composition around the absorber oxygen in the LaFeO3 and LaMnO3 crystal structures were carried out. We find that the low-energy pre-peak is reproduced once the absorbing oxygen and the two nearest neighbour Fe (or Mn) ions are considered in the cluster. Conversely, higher energy pre-peaks only arise when the full oxygen coordination geometry around the two metal sites is taken into account, implying that their energy distance is a reflection of the strength of the oxygen ligand field. Substitutions of the two nearest neighbours by Ga atoms in the cluster of calculation lead to changes in the theoretical spectra that reasonably agree with the evolution of the pre-peaks in the experimental XANES spectra of both the series. © 2011 IOP Publishing Ltd.
- Published
- 2011
20. MsSpec-1.0: A multiple scattering package for electron spectroscopies in material science
- Author
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Sébilleau, D., Natoli, Calogero R., Hatada, Keisuke, Sébilleau, D., Natoli, Calogero R., and Hatada, Keisuke
- Abstract
We present a multiple scattering package to calculate the cross-section of various spectroscopies namely photoelectron diffraction (PED), Auger electron diffraction (AED), X-ray absorption (XAS), low-energy electron diffraction (LEED) and Auger photoelectron coincidence spectroscopy (APECS). This package is composed of three main codes, computing respectively the cluster, the potential and the cross-section. In the latter case, in order to cover a range of energies as wide as possible, three different algorithms are provided to perform the multiple scattering calculation: full matrix inversion, series expansion or correlation expansion of the multiple scattering matrix. Numerous other small Fortran codes or bash/csh shell scripts are also provided to perform specific tasks. The cross-section code is built by the user from a library of subroutines using a makefile.
- Published
- 2011
21. Full-potential multiple scattering theory with space-filling cells for bound and continuum states
- Author
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Hatada, Keisuke, Hayakawa, Kuniko, Benfatto, Maurizio, Natoli, Calogero R., Hatada, Keisuke, Hayakawa, Kuniko, Benfatto, Maurizio, and Natoli, Calogero R.
- Abstract
We present a rigorous derivation of a real-space full-potential multiple scattering theory (FP-MST) that is free from the drawbacks that up to now have impaired its development (in particular the need to expand cell shape functions in spherical harmonics and rectangular matrices), valid both for continuum and bound states, under conditions for space partitioning that are not excessively restrictive and easily implemented. In this connection we give a new scheme to generate local basis functions for the truncated potential cells that is simple, fast, efficient, valid for any shape of the cell and reduces to the minimum the number of spherical harmonics in the expansion of the scattering wavefunction. The method also avoids the need for saturating 'internal sums' due to the re-expansion of the spherical Hankel functions around another point in space (usually another cell center). Thus this approach provides a straightforward extension of MST in the muffin-tin (MT) approximation, with only one truncation parameter given by the classical relation lmax = kRb, where k is the electron wavevector (either in the excited or ground state of the system under consideration) and Rb is the radius of the bounding sphere of the scattering cell. Moreover, the scattering path operator of the theory can be found in terms of an absolutely convergent procedure in the lmax →∞ limit. Consequently, this feature provides a firm ground for the use of FP-MST as a viable method for electronic structure calculations and makes possible the computation of x-ray spectroscopies, notably photo-electron diffraction, absorption and anomalous scattering among others, with the ease and versatility of the corresponding MT theory. Some numerical applications of the theory are presented, both for continuum and bound states.
- Published
- 2010
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