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Bacterial lifestyles depend on conditions encountered during colonization. The transition between planktonic and biofilm growth is dependent on the intracellular second messenger c-di-GMP. High c-di-GMP levels driven by diguanylate cyclases (DGCs) activity favor biofilm formation, while low levels were maintained by phosphodiesterases (PDE) encourage planktonic lifestyle. The activity of these enzymes can be modulated by stimuli-sensing domains such as Per-ARNT-Sim (PAS). In Pseudomonas aeruginosa, more than 40 PDE/DGC are involved in c-di-GMP homeostasis, including 16 dual proteins possessing both canonical DGC and PDE motifs, that is, GGDEF and EAL, respectively. It was reported that deletion of the EAL/GGDEF dual enzyme PA0285, one of five c-di-GMP–related enzymes conserved across all Pseudomonas species, impacts biofilms. PA0285 is anchored in the membrane and carries two PAS domains. Here, we confirm that its role is conserved in various P. aeruginosa strains and in Pseudomonas putida. Deletion of PA0285 impacts the early stage of colonization, and RNA-seq analysis suggests that expression of cupA fimbrial genes is involved. We demonstrate that the C-terminal portion of PA0285 encompassing the GGDEF and EAL domains binds GTP and c-di-GMP, respectively, but only exhibits PDE activity in vitro. However, both GGDEF and EAL domains are important for PA0285 PDE activity in vivo. Complementation of the PA0285 mutant strain with a copy of the gene encoding the C-terminal GGDEF/EAL portion in trans was not as effective as complementation with the full-length gene. This suggests the N-terminal transmembrane and PAS domains influence the PDE activity in vivo, through modulating the protein conformation.

Neural video compression (NVC) is a rapidly evolving video coding research area, with some models achieving superior coding efficiency compared to the latest video coding standard Versatile Video Coding (VVC). In conventional video coding standards, the hierarchical B-frame coding, which utilizes a bidirectional prediction structure for higher compression, had been well-studied and exploited. In NVC, however, limited research has investigated the hierarchical B scheme. In this paper, we propose an NVC model exploiting hierarchical B-frame coding with temporal layer-adaptive optimization. We first extend an existing unidirectional NVC model to a bidirectional model, which achieves -21.13% BD-rate gain over the unidirectional baseline model. However, this model faces challenges when applied to sequences with complex or large motions, leading to performance degradation. To address this, we introduce temporal layer-adaptive optimization, incorporating methods such as temporal layer-adaptive quality scaling (TAQS) and temporal layer-adaptive latent scaling (TALS). The final model with the proposed methods achieves an impressive BD-rate gain of -39.86% against the baseline. It also resolves the challenges in sequences with large or complex motions with up to -49.13% more BD-rate gains than the simple bidirectional extension. This improvement is attributed to the allocation of more bits to lower temporal layers, thereby enhancing overall reconstruction quality with smaller bits. Since our method has little dependency on a specific NVC model architecture, it can serve as a general tool for extending unidirectional NVC models to the ones with hierarchical B-frame coding.

The proliferation of deep learning-based machine vision applications has given rise to a new type of compression, so called video coding for machine (VCM). VCM differs from traditional video coding in that it is optimized for machine vision performance instead of human visual quality. In the feature compression track of MPEG-VCM, multi-scale features extracted from images are subject to compression. Recent feature compression works have demonstrated that the versatile video coding (VVC) standard-based approach can achieve a BD-rate reduction of up to 96% against MPEG-VCM feature anchor. However, it is still sub-optimal as VVC was not designed for extracted features but for natural images. Moreover, the high encoding complexity of VVC makes it difficult to design a lightweight encoder without sacrificing performance. To address these challenges, we propose a novel multi-scale feature compression method that enables both the end-to-end optimization on the extracted features and the design of lightweight encoders. The proposed model combines a learnable compressor with a multi-scale feature fusion network so that the redundancy in the multi-scale features is effectively removed. Instead of simply cascading the fusion network and the compression network, we integrate the fusion and encoding processes in an interleaved way. Our model first encodes a larger-scale feature to obtain a latent representation and then fuses the latent with a smaller-scale feature. This process is successively performed until the smallest-scale feature is fused and then the encoded latent at the final stage is entropy-coded for transmission. The results show that our model outperforms previous approaches by at least 52% BD-rate reduction and has $\times5$ to $\times27$ times less encoding time for object detection..., Comment: 13 pages, accepted by IEEE Transactions on Circuits and Systems for Video Technology

Background and Aim: Rattus spp. are the most common animals capable of adapting to their environment. They can be reservoirs or vectors of diseases that facilitate the transmission of zoonotic-borne parasites to humans. Hence, a study on the detection of parasites in rat populations in urban areas is crucial to prepare for emerging zoonosis. Therefore, this study aims to identify blood parasites, ectoparasites, and helminths in Rattus spp. from wet markets located in Klang Valley, an urban area with a high-density human population. Materials and Methods: A total of 32 rats were trapped in several wet markets in Klang Valley, Malaysia. They were anesthetized for morphometric examination followed by exsanguination. Various parasitological techniques such as perianal tape test, simple flotation, direct examination of the intestine, and fecal smear were performed for intestinal parasite detection; hair plucking, skin scraping, and full body combing for ectoparasite identification; and blood smear, microhematocrit centrifugation, and buffy coat techniques for blood parasite detection. Results: The rats were identified as Rattus rattus (71.9%) and Rattus norvegicus (28.1%). The only blood protozoan found was Trypanosoma lewisi. The ectoparasites identified belonged to two broad groups, mites (Laelaps spp. and Ornithonyssus spp.) and fleas (Xenopsylla cheopis), known to be parasitic zoonotic disease vectors. The zoonotic intestinal parasites were cestodes (Hymenolepis nana), nematodes (Nippostrongylus brasiliensis, Strongyloides spp., Trichuris spp., Capillaria spp., and Syphacia spp.), and intestinal protozoa (coccidian oocysts and Giardia spp.). Microscopic images showing Giardia spp. are the first report of this organism in rats in Malaysia. Conclusion: Rats caught in this urban area of the Klang Valley harbor parasites can pose a potential zoonotic threat to humans, raising public health concerns because of their proximity to densely populated urban areas.

Pseudomonas aeruginosa is a Gram-negative bacterium that is able to survive and adapt in a multitude of niches as well as thrive within many different hosts. This versatility lies within its large genome of ca. 6 Mbp and a tight control in the expression of thousands of genes. Among the regulatory mechanisms widespread in bacteria, cyclic-di-GMP signaling is one which influences all levels of control. c-di-GMP is made by diguanylate cyclases and degraded by phosphodiesterases, while the intracellular level of this molecule drives phenotypic responses. Signaling involves the modification of enzymes' or proteins' function upon c-di-GMP binding, including modifying the activity of regulators which in turn will impact the transcriptome. In P. aeruginosa, there are ca. 40 genes encoding putative DGCs or PDEs. The combined activity of those enzymes should reflect the overall c-di-GMP concentration, while specific phenotypic outputs could be correlated to a given set of dgc/pde. This notion of specificity has been addressed in several studies and different strains of P. aeruginosa. Here, we engineered a mutant library for the 41 individual dgc/pde genes in P. aeruginosa PAO1. In most cases, we observed a significant to slight variation in the global c-di-GMP pool of cells grown planktonically, while several mutants display a phenotypic impact on biofilm including initial attachment and maturation. If this observation of minor changes in c-di-GMP level correlating with significant phenotypic impact appears to be true, it further supports the idea of a local vs global c-di-GMP pool. In contrast, there was little to no effect on motility, which differs from previous studies. Our RNA-seq analysis indicated that all PAO1 dgc/pde genes were expressed in both planktonic and biofilm growth conditions and our work suggests that c-di-GMP networks need to be reconstructed for each strain separately and cannot be extrapolated from one to another.

Pseudomonas aeruginosa is a Gram-negative bacterium that is able to survive and adapt in a multitude of niches as well as thrive within many different hosts. This versatility lies within its large genome of ca. 6 Mbp and a tight control in the expression of thousands of genes. Among the regulatory mechanisms widespread in bacteria, cyclic-di-GMP signaling is one which influences all levels of control. c-di-GMP is made by diguanylate cyclases and degraded by phosphodiesterases, while the intracellular level of this molecule drives phenotypic responses. Signaling involves the modification of enzymes’ or proteins’ function upon c-di-GMP binding, including modifying the activity of regulators which in turn will impact the transcriptome. In P. aeruginosa, there are ca. 40 genes encoding putative DGCs or PDEs. The combined activity of those enzymes should reflect the overall c-di-GMP concentration, while specific phenotypic outputs could be correlated to a given set of dgc/pde. This notion of specificity has been addressed in several studies and different strains of P. aeruginosa. Here, we engineered a mutant library for the 41 individual dgc/pde genes in P. aeruginosa PAO1. In most cases, we observed a significant to slight variation in the global c-di-GMP pool of cells grown planktonically, while several mutants display a phenotypic impact on biofilm including initial attachment and maturation. If this observation of minor changes in c-di-GMP level correlating with significant phenotypic impact appears to be true, it further supports the idea of a local vs global c-di-GMP pool. In contrast, there was little to no effect on motility, which differs from previous studies. Our RNA-seq analysis indicated that all PAO1 dgc/pde genes were expressed in both planktonic and biofilm growth conditions and our work suggests that c-di-GMP networks need to be reconstructed for each strain separately and cannot be extrapolated from one to another.

A novel compact-size branch-line coupler using composite right/left-handed transmission lines is proposed in this paper. In order to obtain miniaturization, composite right/left-handed transmission lines with novel complementary split single ring resonators which are realized by loading a pair of meander-shaped-slots in the split of the ring are designed. This novel coupler occupies only 22.8% of the area of the conventional approach at 0.7 GHz. The proposed coupler can be implemented by using the standard printed-circuit-board etching processes without any implementation of lumped elements and via-holes, making it very useful for wireless communication systems. The agreement between measured and stimulated results validates the feasible configuration of the proposed coupler.

The Saccharomyces cerevisiae protein Ure2 functions as a regulator of nitrogen metabolism and as a glutathione-dependent peroxidase. Ure2 also has the characteristics of a prion, in that it can undergo a heritable conformational change to an aggregated state; the prion form of Ure2 loses the regulatory function, but the enzymatic function appears to be maintained. A number of factors are found to affect the prion properties of Ure2, including mutation and expression levels of molecular chaperones, and the effect of these factors on structure and stability are being investigated. The relationship between structure, function and folding for the yeast prion Ure2 are discussed.