1. Identification of a Novel Pyroptosis-Related Gene Signature Indicative of Disease Prognosis and Treatment Response in Skin Cutaneous Melanoma
- Author
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Li,An-An, Zhang,Yu, Tong,Wei-Lai, Chen,Jiang-Wei, Huang,Shan-Hu, Liu,Jia-Ming, Liu,Zhi-Li, Li,An-An, Zhang,Yu, Tong,Wei-Lai, Chen,Jiang-Wei, Huang,Shan-Hu, Liu,Jia-Ming, and Liu,Zhi-Li
- Abstract
An-An Li,1,2 Yu Zhang,1,2 Wei-Lai Tong,1,2 Jiang-Wei Chen,1 Shan-Hu Huang,1 Jia-Ming Liu,1 Zhi-Li Liu1,2 1Department of Orthopedic Surgery, The First Affiliated Hospital of Nanchang University, Nanchang, Peopleâs Republic of China; 2Medical Innovation Center, The First Affiliated Hospital of Nanchang University, Nanchang, Peopleâs Republic of ChinaCorrespondence: Zhi-Li Liu; Jia-Ming Liu, Department of Orthopedic Surgery, The First Affiliated Hospital of Nanchang University, No. 17 Yongwaizheng Street, Donghu District, Nanchang, 330006, Peopleâs Republic of China, Tel/Fax +86-791-88693201, Email liuzhiliyfy@163.com; zgm7977@ncu.edu.cn; liujiamingdr@hotmail.comPurpose: Pyroptosis plays an important role in the occurrence and progression of many tumors; however, the specific mechanisms involved remain unknown. Here, we construct a pyroptosis-related gene signature that can be used to predict survival prognosis of skin cutaneous melanoma (SKCM) and provide guidance for clinical treatment.Methods: By integrating data from the two databases from the GTEx and TCGA, differentially expressed genes (DEGs) from normal tissues and skin cutaneous tumor tissues were identified. The main signaling pathways and function enrichment of these differential genes were determined. Univariate and multivariate COX regression analysis, and risk score analysis were used to construct a signature to assess its predictive value for overall survival. The mRNA expression of these five genes in melanoma cells was determined by quantitative polymerase chain reaction (qPCR). The pRRophetic algorithm was used to estimate the half-maximal inhibitory concentration (IC50) of chemotherapy drugs in SKCM patients. The expression of multiple immune checkpoint genes also was evaluated.Results: Sixteen DEGs associated with pyroptosis in SKCM and normal skin tissues were identified. Of these, 12 pyroptosis-related DEGs were associated with the prognosis of SKCM. A five-gene signature (GSDMA, GSDMC, IL-1
- Published
- 2022