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Water availability is the dominant control of global terrestrial primary productivity with concurrent effects on evapotranspiration and ecosystem respiration, especially in water-limited ecosystems. Process-oriented ecosystem models are critical tools for understanding land-atmosphere exchanges and for up-scaling this information to regional and global scales. Thus, it is important to understand how ecosystem models simulate ecosystem fluxes under changing weather conditions. Here, we applied both time-series analysis and meta-analysis techniques to study how five ecosystem process-oriented models-simulated gross primary production (GPP), ecosystem respiration (Reco), and evapotranspiration (ET). Ecosystem fluxes were simulated for 3 years at a daily time step from four evergreen and three deciduous Mediterranean oak woodlands (21 site-year measurements; 105 site-year-simulations). Mediterranean ecosystems are important test-beds for studying the interannual dynamics of soil moisture on ecosystem mass and energy exchange as they experience cool, wet winters with hot, dry summers and are typically subject to drought. Results show data-model disagreements at multiple temporal scales for GPP, Reco, and ET at both plant functional types. Overall there was a systematic underestimation of the temporal variation of Reco at both plant functional types at temporal scales between weeks and months, and an overestimation at the yearly scale. Modeled Reco was systematically overestimated during drought for all sites, but daily GPP was systematically underestimated only for deciduous sites during drought. In contrast, daily estimates of ET showed good data-model agreement even during drought conditions. This meta-analysis brings attention to the importance of drought conditions for modeling purposes in representing forest dynamics in water-limited ecosystems. © 2013 Springer Science+Business Media New York.

In this study, we explore how a hurricane disturbance influenced carbon allocation for the production of new fine roots. Before and after a hurricane, we measured the age of carbon (time since fixation from the atmosphere) in fine root structural tissues using natural abundance radiocarbon (14C) measured by accelerator mass spectrometry. Roots were sampled from five seasonally dry tropical forests ranging in age from 6 yr to a mature forest. Structural carbon in combined live + dead roots picked from soil cores sampled 1 month before the hurricane had mean ages ranging from 4 to 11 yr, whereas live roots alone had ages of 1-2 yr. Structural carbon in new live fine roots produced over a period lasting from 3 wk before the hurricane to 2 months after the event had mean ages of between 2 and 10 yr. Contrary to expectations, our results showed that plants allocate long-lived storage carbon pools to the production of new fine roots after canopy defoliation and root mortality. The age of the carbon allocated for new roots increased with forest age and forest above-ground biomass, suggesting an adaptation of plants to survive and recover from severe disturbances.

In this study, we explore how a hurricane disturbance influenced carbon allocation for the production of new fine roots. Before and after a hurricane, we measured the age of carbon (time since fixation from the atmosphere) in fine root structural tissues using natural abundance radiocarbon (14C) measured by accelerator mass spectrometry. Roots were sampled from five seasonally dry tropical forests ranging in age from 6 yr to a mature forest. Structural carbon in combined live + dead roots picked from soil cores sampled 1 month before the hurricane had mean ages ranging from 4 to 11 yr, whereas live roots alone had ages of 1-2 yr. Structural carbon in new live fine roots produced over a period lasting from 3 wk before the hurricane to 2 months after the event had mean ages of between 2 and 10 yr. Contrary to expectations, our results showed that plants allocate long-lived storage carbon pools to the production of new fine roots after canopy defoliation and root mortality. The age of the carbon allocated for new roots increased with forest age and forest above-ground biomass, suggesting an adaptation of plants to survive and recover from severe disturbances.

• Characterization of spatial and temporal variation of soil respiration coupled with fine root and rhizomorph dynamics is necessary to understand the mechanisms that regulate soil respiration.• A dense wireless network array of soil CO2 sensors in combination with minirhizotron tubes was used to continuously measure soil respiration over 1 yr in a mixed conifer forest in California, USA, in two adjacent areas with different vegetation types: an area with woody vegetation (Wv) and an area with scattered herbaceous vegetation (Hv).• Annual soil respiration rates and the lengths of fine roots and rhizomorphs were greater at Wv than at Hv. Soil respiration was positively correlated with fine roots and rhizomorphs at Wv but only with fine roots at Hv. Diel and seasonal soil respiration patterns were decoupled with soil temperature at Wv but not at Hv. When decoupled, higher soil respiration rates were observed at increasing temperatures, demonstrating a hysteresis effect. The diel hysteresis at Wv was explained by including the temperature-dependent component of soil respiration and the variation dependent on photosynthetically active radiation.• The results show that vegetation type and fine root and rhizomorph dynamics influence soil respiration in addition to changes in light, temperature and moisture

Hurricanes are infrequent disturbances that affect tropical ecosystems and cause obvious damage on aboveground variables, but their impact on soil respiration is unclear. This study is the first attempt to continuously measure soil CO2 concentrations in a seasonally dry tropical forest to describe diel patterns of soil CO2 and respiration. Here we used solid-state CO2 sensors and the gradient flux method to calculate soil respiration following the unexpected pass of hurricaneWilma at the Yucata´n Peninsula, Mexico. Mean annual soil respiration for the year following the hurricane was 10.4 mmol CO2m-2 s-1 with a cumulative soil respiration of 3821 g CO2 m-2 a-1. Soil CO2 concentrations returned to prehurricane levels after 6 months at 16 cm depth, however, soil CO2 remained higher at 2 and 16 cm depth 1 year after the event. Contrary to previous studies, our results showed that soil respiration was 18% higher 1 year after the hurricane than during the same dates before the event. Diel patterns of soil respiration were decoupled from soil temperature with higher values at night between 2400 and 0600 h. Between 67 and 70% of total soil respiration was produced in the 2–8 cm layer, and this contribution was relatively constant across the sampled year and before the hurricane.We found seasonal shifts in the amplitude and shape and of diel hysteresis effects of soil respiration suggesting that other biophysical mechanisms regulate daily patterns of soil respiration other than soil temperature alone in this tropical forest.

Fine roots and rhizomorphs have important implications for the global carbon balance, but the processes underlying these carbon sinks are not well understood. In this study, we coupled continuous minirhizotron observations with an array of solid-state CO2 sensors. We calculated soil respiration using a gradient flux method. Using a Kaplan-Maier survival analysis, we determined a median longevity of 347 d for fine roots and of 400 d for rhizomorphs. Radiocarbon (14C) analysis suggested an age of 7 yr for fine roots <1 mm and 17 yr for roots of 1 mm in diameter. We found rapid changes in root length (maximum of 38.1 cm m–2 d–1) and rhizomorph length (maximum of 105.4 cm m–2 d–1) during sampling of four consecutive days. Changes in rhizomorph length were more variable than root length, and rhizomorphs were negatively correlated with daily changes in soil moisture. The variation in root length may be associated to prior environmental conditions. Fine root length was correlated with daily CO2 production, and variation in daily fine root length could contribute up to 4680 g C ha–1 d–1. We observed a clockwise diurnal hysteresis effect in soil respiration with soil temperature that changed in amplitude and shape along the year. Our results show the importance of shorter intervals of minirhizotron measurements to understand rapid fine roots and rhizomorphs variation. Furthermore, continuous minirhizotron measurements should be couple with continuous measurements of multiple sensor arrays to explain biophysical factors that regulate belowground carbon dynamics.

• Characterization of spatial and temporal variation of soil respiration coupled with fine root and rhizomorph dynamics is necessary to understand the mechanisms that regulate soil respiration.• A dense wireless network array of soil CO2 sensors in combination with minirhizotron tubes was used to continuously measure soil respiration over 1 yr in a mixed conifer forest in California, USA, in two adjacent areas with different vegetation types: an area with woody vegetation (Wv) and an area with scattered herbaceous vegetation (Hv).• Annual soil respiration rates and the lengths of fine roots and rhizomorphs were greater at Wv than at Hv. Soil respiration was positively correlated with fine roots and rhizomorphs at Wv but only with fine roots at Hv. Diel and seasonal soil respiration patterns were decoupled with soil temperature at Wv but not at Hv. When decoupled, higher soil respiration rates were observed at increasing temperatures, demonstrating a hysteresis effect. The diel hysteresis at Wv was explained by including the temperature-dependent component of soil respiration and the variation dependent on photosynthetically active radiation.• The results show that vegetation type and fine root and rhizomorph dynamics influence soil respiration in addition to changes in light, temperature and moisture

Hurricanes are infrequent disturbances that affect tropical ecosystems and cause obvious damage on aboveground variables, but their impact on soil respiration is unclear. This study is the first attempt to continuously measure soil CO2 concentrations in a seasonally dry tropical forest to describe diel patterns of soil CO2 and respiration. Here we used solid-state CO2 sensors and the gradient flux method to calculate soil respiration following the unexpected pass of hurricaneWilma at the Yucata´n Peninsula, Mexico. Mean annual soil respiration for the year following the hurricane was 10.4 mmol CO2m-2 s-1 with a cumulative soil respiration of 3821 g CO2 m-2 a-1. Soil CO2 concentrations returned to prehurricane levels after 6 months at 16 cm depth, however, soil CO2 remained higher at 2 and 16 cm depth 1 year after the event. Contrary to previous studies, our results showed that soil respiration was 18% higher 1 year after the hurricane than during the same dates before the event. Diel patterns of soil respiration were decoupled from soil temperature with higher values at night between 2400 and 0600 h. Between 67 and 70% of total soil respiration was produced in the 2–8 cm layer, and this contribution was relatively constant across the sampled year and before the hurricane.We found seasonal shifts in the amplitude and shape and of diel hysteresis effects of soil respiration suggesting that other biophysical mechanisms regulate daily patterns of soil respiration other than soil temperature alone in this tropical forest.

Fine roots and rhizomorphs have important implications for the global carbon balance, but the processes underlying these carbon sinks are not well understood. In this study, we coupled continuous minirhizotron observations with an array of solid-state CO2 sensors. We calculated soil respiration using a gradient flux method. Using a Kaplan-Maier survival analysis, we determined a median longevity of 347 d for fine roots and of 400 d for rhizomorphs. Radiocarbon (14C) analysis suggested an age of 7 yr for fine roots <1 mm and 17 yr for roots of 1 mm in diameter. We found rapid changes in root length (maximum of 38.1 cm m–2 d–1) and rhizomorph length (maximum of 105.4 cm m–2 d–1) during sampling of four consecutive days. Changes in rhizomorph length were more variable than root length, and rhizomorphs were negatively correlated with daily changes in soil moisture. The variation in root length may be associated to prior environmental conditions. Fine root length was correlated with daily CO2 production, and variation in daily fine root length could contribute up to 4680 g C ha–1 d–1. We observed a clockwise diurnal hysteresis effect in soil respiration with soil temperature that changed in amplitude and shape along the year. Our results show the importance of shorter intervals of minirhizotron measurements to understand rapid fine roots and rhizomorphs variation. Furthermore, continuous minirhizotron measurements should be couple with continuous measurements of multiple sensor arrays to explain biophysical factors that regulate belowground carbon dynamics.

Cyanobacteria are important for global nitrogen cycle and often form complex associations referred to as cyanobacterial mats or periphyton that are common in tropical, limestone-based wetlands. The objective of this study was to monitor the nitrogen fixation rate using the acetylene reduction assay of these cyanobacterial mats in a tropical, unfertilized, and protected wetland. To account for temporal and spatial variation of nitrogenase activity, we were interested in seasons in a hydrological cycle (dry, rains, and end of rains), sites with different vascular vegetation, and rates of nitrogenase activity in a 24-h cycle. The annual average of nitrogenase activity was 22 nmol C2H4 cm(-2) h(-1), with a range of < 6 to 35 nmol C2H4 cm(-2) h(-1), and the annual nitrogen fixation rate of our study site (9.0 g N m(-2) year(-1)) is higher than similar estimates from other freshwater wetlands. There was a clear temporal pattern in nitrogenase activity with a maximum rate occurring during the rainy season (August) and a maximum nitrogenase activity occurring between 0600 and 1200 hours. We found spatial differences in nitrogenase activity among the four sites that could be attributed to variations in species composition within the periphyton.

Cyanobacteria are important for global nitrogen cycle and often form complex associations referred to as cyanobacterial mats or periphyton that are common in tropical, limestone-based wetlands. The objective of this study was to monitor the nitrogen fixation rate using the acetylene reduction assay of these cyanobacterial mats in a tropical, unfertilized, and protected wetland. To account for temporal and spatial variation of nitrogenase activity, we were interested in seasons in a hydrological cycle (dry, rains, and end of rains), sites with different vascular vegetation, and rates of nitrogenase activity in a 24-h cycle. The annual average of nitrogenase activity was 22 nmol C2H4 cm(-2) h(-1), with a range of < 6 to 35 nmol C2H4 cm(-2) h(-1), and the annual nitrogen fixation rate of our study site (9.0 g N m(-2) year(-1)) is higher than similar estimates from other freshwater wetlands. There was a clear temporal pattern in nitrogenase activity with a maximum rate occurring during the rainy season (August) and a maximum nitrogenase activity occurring between 0600 and 1200 hours. We found spatial differences in nitrogenase activity among the four sites that could be attributed to variations in species composition within the periphyton.