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Redox variations across the Permian‐Triassic boundary (PTB) have long been debated, especially during the proliferation of PTB microbialites. Here, we report redox fluctuations across the PTB to evaluate links between the two based on pyrite framboid analysis from basin to platform settings in South China. During the end‐Permian extinction, abundant framboids indicate a widespread anoxia that was likely a direct cause of extinction. In the earliest Triassic (Hindeodus parvusconodont zone), pyrite framboids were absent in ramp to basin and shallow, nonmicrobialite platform sections. In contrast, the coeval microbialites yield abundant framboids indicative of dysoxia. The fact that framboids were only confined to PTB microbialites and absent in other habitats indicates that microbe bloom may have stimulated dysoxic watermass and triggered the framboid growth within microbe aggregates. Thus, microbialites were not built in reducing settings, but instead, microbial proliferation caused local, dysoxia within shallow oxygenated platforms after the extinction. The widespread occurrence of microbialites immediately after the end‐Permian extinction has attracted interest about their formation conditions. Microbialites are generally believed to be formed during microbial bloom in reducing conditions linked to the mass extinction. However, the cause‐and‐effect relationship between microbe bloom and reducing states of seawater has long been disputed. Our new results based on analyses of 17,306 pyrite framboid diameters and morphologies derived from various Permian‐Triassic boundary sections in South China show that microbialite formation (microbial bloom) was not triggered by reducing waters upwelled from deeper water masses, instead, it caused local, dysoxic areas within oxygenated platforms after the end‐Permian crisis. A total of 17,306 pyrite framboids are analyzed in size and morphology from the Permian‐Triassic boundary beds of 26 sections, South ChinaFramboids were absent in ramp to basin and shallow, nonmicrobialite platforms after the extinction, but occurred in coeval microbialitesMicrobe bloom/microbialite growth was not triggered by reducing condition, but stimulated dysoxic water mass and triggered framboid growth A total of 17,306 pyrite framboids are analyzed in size and morphology from the Permian‐Triassic boundary beds of 26 sections, South China Framboids were absent in ramp to basin and shallow, nonmicrobialite platforms after the extinction, but occurred in coeval microbialites Microbe bloom/microbialite growth was not triggered by reducing condition, but stimulated dysoxic water mass and triggered framboid growth