1. Comprehensive Genetic Analysis of RASopathy in the Era of Next-Generation Sequencing and Definition of a Novel Likely Pathogenic KRASVariation
- Author
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Demir, Selma, Yaşar Köstek, Hümeyra, Sanrı, Aslıhan, Yıldırım, Ruken, Özgüç Çömlek, Fatma, Yalçıntepe, Sinem, Deveci, Murat, Atlı, Emine İkbal, Atlı, Engin, Eker, Damla, Gürkan, Hakan, and Tütüncüler Kökenli, Filiz
- Abstract
Introduction:Germline pathogenic variations of the genes encoding the components of the Ras-MAPK pathway are found to be responsible for RASopathies, a clinically and genetically heterogeneous group of diseases. In this study, we aimed to present the results of patients genetically investigated for RASopathy-related mutations in our Genetic Diagnosis Center. Methods:The results of 51 unrelated probands with RASopathy and 4 affected relatives (31 male, 24 female; mean age: 9.327 ± 8.214) were included in this study. Mutation screening was performed on DNA samples from peripheral blood of the patients either by Sanger sequencing of PTPN11hotspot regions (10/51 probands), or by a targeted amplicon next-generation sequencing panel (41/51 probands) covering the exonic regions of BRAF, CBL, HRAS, KRAS, LZTR1, MAP2K1, MAP2K2, NF1, NRAS, PTPN11, RAF1, RASA2, RIT1, SHOC2, SOS1, SOS2, SPRED1, and KAT6Bgenes. Results:Pathogenic/likely pathogenic variations found in 22 out of 51 probands (43.13%) and their 4 affected family members were located in PTPN11, BRAF, KRAS, NF1, RAF1, SOS1, and SHOC2genes. The c.148A>C (p.Thr50Pro) variation in the KRASgene was a novel variant detected in a sibling in our patient cohort. We found supportive evidence for the pathogenicity of the NF1gene c.5606G>T (p.Gly1869Val) variation which we defined in an affected boy who inherited the mutation from his affected father. Conclusion:Although PTPN11is the most frequently mutated gene in our patient cohort, as in most previous reports, different mutation distribution among the other genes studied motivates the use of a next-generation sequencing gene panel including the possible responsible genes.
- Published
- 2022
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