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1. Tubulin CFEOM mutations both inhibit or activate kinesin motor activity

2. Directional Force Originating from ATP Hydrolysis Drives the GroEL Conformational Change

5. Functional Protein Dynamics Directly from Sequences

6. Characterizing interactions in E-cadherin assemblages

7. ArcA Controls Metabolism, Chemotaxis, and Motility Contributing to the Pathogenicity of Avian Pathogenic Escherichia coli

8. Elastic network models capture the motions apparent within ensembles of RNA structures

13. Analysis of protein dynamics using local-DME calculations

14. Models To Approximate the Motions of Protein Loops

15. Focused Functional Dynamics of Supramolecules by Use of a Mixed-Resolution Elastic Network Model

16. Refinement of under-determined loops of Human Prion Protein by database-derived distance constraints

17. Predicting the Complex Structure and Functional Motions of the Outer Membrane Transporter and Signal Transducer FecA

18. How Well Can We Understand Large-Scale Protein Motions Using Normal Modes of Elastic Network Models?

19. Prediction of RNA binding sites in proteins from amino acid sequence.

20. Comparison of tRNA Motions in the Free and Ribosomal Bound Structures

21. Rigid-Cluster Models of Conformational Transitions in Macromolecular Machines and Assemblies

22. Molecular Mechanism of Domain Swapping in Proteins: An Analysis of Slower Motions

23. Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space

24. Efficient Generation of Feasible Pathways for Protein Conformational Transitions

25. Relating Molecular Flexibility to Function: A Case Study of Tubulin

26. Dynamics of large proteins through hierarchical levels of coarse‐grained structures

27. Residue coordination in proteins conforms to the closest packing of spheres

28. Important fluctuation dynamics of large protein structures are preserved upon coarse-grained renormalization<FNR HREF="fn1">*</FNR> <FN ID="fn1"> Dedicated to the memory of Per-Olov Löwdin. </FN>

29. Identifying sequence–structure pairs undetected by sequence alignments

30. Self‐consistent estimation of inter‐residue protein contact energies based on an equilibrium mixture approximation of residues

31. Collective Motions in HIV-1 Reverse Transcriptase: Examination of Flexibility and Enzyme Function

32. Evaluation of short‐range interactions as secondary structure energies for protein fold and sequence recognition

33. An empirical energy potential with a reference state for protein fold and sequence recognition

34. Understanding the recognition of protein structural classes by amino acid composition

35. A role for CH…O interactions in protein-DNA recognition11Edited by B. Honig

36. Influence of Fluctuations on DNA Curvature

37. Probing the Structure of a Putative Intermediate in Homologous Recombination: The Third Strand in the Parallel DNA Triplex is in Contact with the Major Groove of the Duplex

38. Amino Acid Pair Interchanges at Spatially Conserved Locations

39. Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms11Edited by I. Tinoco

40. Equilibrium folding pathways for model proteins

41. Residue – Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term, for Simulation and Threading

44. Simulated Drug Efflux for the AbgT Family of Membrane Transporters

45. hdANM: a new comprehensive dynamics model for protein hinges

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