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The temporal and spatial dynamics of phytoplankton in the River Meuse and a number of physical and chemical parameters were analyzed to gain insight into the pollution level in the river affecting the phytoplankton community. During 1993, samples were taken every two months at eight stations along the River Meuse for physical, chemical and biological characterization of the water. In February, water samples were also taken for laboratory incubations of the natural plankton community. The algae showed a rapid successive development with highest densities (up to 77 mg chlorophylla l−1) in the middle reach of the river in spring and summer. During winter algal biomass remained very low. A substantial input of nutrients (nitrogen, phosphorus) was observed in the middle reach of the river. Concurrently, an increase in temperature and a reduction in pH was observed. Furthermore, the toxicity of polar organic compounds in the Microtox test showed a strong increase up to the city of Liège and the Belgian/Dutch border; the water quality improved further downstream. The relatively high toxicity at the location Liège was reflected in relatively low growth rates of phytoplankton in the laboratory experiments using water from these locations.