3 results
Search Results
2. Privacy-preserving mimic models for clinical named entity recognition in French
- Author
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Nesrine Bannour, Perceval Wajsbürt, Bastien Rance, Xavier Tannier, Aurélie Névéol, Information, Langue Ecrite et Signée (ILES), Laboratoire Interdisciplinaire des Sciences du Numérique (LISN), Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Sciences et Technologies des Langues (STL), Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Informatique Médicale et Ingénierie des Connaissances en e-Santé (LIMICS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Sorbonne Paris Nord, Centre de Recherche des Cordeliers (CRC (UMR_S_1138 / U1138)), École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Paris Cité (UPCité), Health data- and model- driven Knowledge Acquisition (HeKA), Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre de Recherche des Cordeliers (CRC (UMR_S_1138 / U1138)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Paris Cité (UPCité)-École Pratique des Hautes Études (EPHE), This work was supported by ITMO Cancer Aviesan. The funding organization had no role in the conceptualization, design, data collection and analysis, preparation of the paper, or the decision to publish it., Tannier, Xavier, École pratique des hautes études (EPHE), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Paris Cité (UPCité)-École pratique des hautes études (EPHE)
- Subjects
Computer ,Narration ,Mimic learning ,Privacy ,[INFO.INFO-CL] Computer Science [cs]/Computation and Language [cs.CL] ,Natural language processing ,Confidentiality Datasets as topic ,Humans ,Electronic health records ,Health Informatics ,Neural networks ,[INFO.INFO-CL]Computer Science [cs]/Computation and Language [cs.CL] ,Computer Science Applications - Abstract
International audience; A vast amount of crucial information about patients resides solely in unstructured clinical narrative notes. There has been a growing interest in clinical Named Entity Recognition (NER) task using deep learning models. Such approaches require sufficient annotated data. However, there is little publicly available annotated corpora in the medical field due to the sensitive nature of the clinical text. In this paper, we tackle this problem by building privacy-preserving shareable models for French clinical Named Entity Recognition using the mimic learning approach to enable the knowledge transfer through a teacher model trained on a private corpus to a student model. This student model could be publicly shared without any access to the original sensitive data. We evaluated three privacy-preserving models using three medical corpora and compared the performance of our models to those of baseline models such as dictionary-based models. An overall macro F-measure of 70.6% could be achieved by a student model trained using silver annotations produced by the teacher model, compared to 85.7% for the original private teacher model. Our results revealed that these privacy-preserving mimic learning models offer a good compromise between performance and data privacy preservation.
- Published
- 2022
3. Modeling and training strategies for language recognition systems
- Author
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Raphaël Duroselle, Denis Jouvet, Md. Sahidullah, Irina Illina, Speech Modeling for Facilitating Oral-Based Communication (MULTISPEECH), Inria Nancy - Grand Est, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Department of Natural Language Processing & Knowledge Discovery (LORIA - NLPKD), Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Experiments presented in this paper were carried out using the Grid5000 testbed, supported by a scientific interest group hosted by Inria and including CNRS, RENATER and several Universities as well as other organizations (see https://www.grid5000.fr). This work has been partly funded by the French Direction Générale de l’Armement., Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), and Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)
- Subjects
business.industry ,Computer science ,multi-task training ,020206 networking & telecommunications ,02 engineering and technology ,computer.software_genre ,endto-end speech recognition ,Training (civil) ,language recognition ,030507 speech-language pathology & audiology ,03 medical and health sciences ,bottleneck features ,0202 electrical engineering, electronic engineering, information engineering ,[INFO]Computer Science [cs] ,Artificial intelligence ,0305 other medical science ,business ,computer ,Natural language processing ,Language recognition - Abstract
International audience; Automatic speech recognition is complementary to language recognition. The language recognition systems exploit this complementarity by using frame-level bottleneck features extracted from neural networks trained with a phone recognition task. Recent methods apply frame-level bottleneck features extracted from an end-to-end sequence-to-sequence speech recognition model. In this work, we study an integrated approach of the training of the speech recognition feature extractor and language recognition modules. We show that for both classical phone recognition and end-to-end sequence-to-sequence features, sequential training of the two modules is not the optimal strategy. The feature extractor can be improved by supervision with the language identification loss, either in a fine-tuning step or in a multi-task training framework. Besides, we notice that end-to-end sequence-to-sequence bottleneck features are on par with classical phone recognition bottleneck features without requiring a forced alignment of the signal with target tokens. However, for sequence-to-sequence, the architecture of the model seems to play an important role; the Conformer architectures leads to much better results than the conventional stacked DNNs approach; and can even be trained directly with the LID module in an end-to-end approach.
- Published
- 2021
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