1. Coil-helix transition of polypeptide at water-lipid interface
- Author
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Sharma, Ganga P., Reshetnyak, Yana K., Andreev, Oleg A., Karbach, Michael, and Müller, Gerhard
- Subjects
Condensed Matter - Soft Condensed Matter ,Condensed Matter - Statistical Mechanics ,Quantitative Biology - Biomolecules - Abstract
We present the exact solution of a microscopic statistical mechanical model for the transformation of a long polypeptide between an unstructured coil conformation and an $\alpha$-helix conformation. The polypeptide is assumed to be adsorbed to the interface between a polar and a non-polar environment such as realized by water and the lipid bilayer of a membrane. The interfacial coil-helix transformation is the first stage in the folding process of helical membrane proteins. Depending on the values of model parameters, the conformation changes as a crossover, a discontinuous transition, or a continuous transition with helicity in the role of order parameter. Our model is constructed as a system of statistically interacting quasiparticles that are activated from the helix pseudo-vacuum. The particles represent links between adjacent residues in coil conformation that form a self-avoiding random walk in two dimensions. Explicit results are presented for helicity, entropy, heat capacity, and the average numbers and sizes of both coil and helix segments., Comment: 22 pages, 12 figures, accepted for publication by JSTAT
- Published
- 2014
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