16 results on '"van der Hoorn, Berry"'
Search Results
2. Functional traits explain crayfish invasive success in the Netherlands
- Author
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van Kuijk, Tiedo, Biesmeijer, Jacobus C., van der Hoorn, Berry B., and Verdonschot, Piet F. M.
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- 2021
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3. Uncovering bacterial and functional diversity in macroinvertebrate mitochondrial-metagenomic datasets by differential centrifugation
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Macher, Jan-Niklas, Speksnijder, Arjen, Choo, Le Qin, van der Hoorn, Berry, and Renema, Willem
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- 2019
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4. A strategy for successful integration of DNA-based methods in aquatic monitoring
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Blancher, Philippe, Lefrançois, Estelle, Rimet, Frédéric, Vasselon, Valentin, Argillier, Christine, Arle, Jens, Beja, Pedro, Boets, Pieter, Boughaba, Jeanne, Chauvin, Christian, Deacon, Michael, Duncan, Willie, Ejdung, Gunilla, Erba, Stefania, Ferrari, Benoit, Fischer, Helmut, Hänfling, Bernd, Haldin, Michael, Hering, Daniel, Hette-Tronquart, Nicolas, Hiley, Alice, Järvinen, Marko, Jeannot, Benjamin, Kahlert, Maria, Kelly, Martyn, Kleinteich, Julia, Koyuncuoǧlu, Serdar, Krenek, Sascha, Langhein-Winther, Sidsel, Leese, Florian, Mann, David, Marcel, Rémy, Marcheggiani, Stefania, Meissner, Kristian, Mergen, Patricia, Monnier, Olivier, Narendja, Frank, Neu, Diane, Pinto, Veronica Onofre, Pawlowska, Alina, Pawlowski, Jan, Petersen, Martin, Poikane, Sandra, Pont, Didier, Renevier, Marie-Sophie, Sandoy, Steinar, Svensson, Jonas, Trobajo, Rosa, Zagyva, Andrea Tünde, Tziortzis, Iakovos, Van Der Hoorn, Berry, Vasquez, Marlen Ines, Walsh, Kerry, Weigand, Alexander, Bouchez, Agnès, Onofre Pinto, Veronica, Tünde Zagyva, Andrea, Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), SCIMABIO Interface SAS, Ecosystèmes aquatiques et changements globaux (UR EABX), Centre Ecotox Oekotoxzentrum, Swiss Federal Insitute of Aquatic Science and Technology [Dübendorf] (EAWAG)-Ecole Polytechnique Fédérale de Lausanne (EPFL), Universität Duisburg-Essen = University of Duisburg-Essen [Essen], Swedish University of Agricultural Sciences (SLU), Aquabio, Finnish Environment Institute (SYKE), Université de Genève = University of Geneva (UNIGE), Institute of Agrifood Research and Technology [Sant Carles de la Ràpita] (IRTA), Institut de Recerca i Tecnologia Agroalimentàries = Institute of Agrifood Research and Technology (IRTA), and European Project
- Subjects
Water Framework Directive ,Aquatic ecosystems ,[SDE]Environmental Sciences ,Genetics ,DNAqua-Net ,Animal Science and Zoology ,Earth and Related Environmental Sciences ,eDNA ,Natural Sciences ,Ecological assessment ,Biologie ,Molecular Biology ,Nature and Landscape Conservation - Abstract
Recent advances in molecular biomonitoring open new horizons for aquatic ecosystem assessment. Rapid and cost-effective methods based on organismal DNA or environmental DNA (eDNA) now offer the opportunity to produce inventories of indicator taxa that can subsequently be used to assess biodiversity and ecological quality. However, the integration of these new DNA-based methods into current monitoring practices is not straightforward, and will require coordinated actions in the coming years at national and international levels. To plan and stimulate such an integration, the European network DNAqua-Net (COST Action CA15219) brought together international experts from academia, as well as key environmental biomonitoring stakeholders from different European countries. Together, this transdisciplinary consortium developed a roadmap for implementing DNA-based methods with a focus on inland waters assessed by the EU Water Framework Directive (2000/60/EC). This was done through a series of online workshops held in April 2020, which included fifty participants, followed by extensive synthesis work. The roadmap is organised around six objectives: 1) to highlight the effectiveness and benefits of DNA-based methods, 2) develop an adaptive approach for the implementation of new methods, 3) provide guidelines and standards for best practice, 4) engage stakeholders and ensure effective knowledge transfer, 5) support the environmental biomonitoring sector to achieve the required changes, 6) steer the process and harmonise efforts at the European level. This paper provides an overview of the forum discussions and the common European views that have emerged from them, while reflecting the diversity of situations in different countries. It highlights important actions required for a successful implementation of DNA-based biomonitoring of aquatic ecosystems by 2030.
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- 2022
5. A strategy for successful integration of DNA-based methods in aquatic monitoring
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Blancher, Philippe, primary, Lefrançois, Estelle, additional, Rimet, Frédéric, additional, Vasselon, Valentin, additional, Argillier, Christine, additional, Arle, Jens, additional, Beja, Pedro, additional, Boets, Pieter, additional, Boughaba, Jeanne, additional, Chauvin, Christian, additional, Deacon, Michael, additional, Duncan, Willie, additional, Ejdung, Gunilla, additional, Erba, Stefania, additional, Ferrari, Benoit, additional, Fischer, Helmut, additional, Hänfling, Bernd, additional, Haldin, Michael, additional, Hering, Daniel, additional, Hette-Tronquart, Nicolas, additional, Hiley, Alice, additional, Järvinen, Marko, additional, Jeannot, Benjamin, additional, Kahlert, Maria, additional, Kelly, Martyn, additional, Kleinteich, Julia, additional, Koyuncuoğlu, Serdar, additional, Krenek, Sascha, additional, Langhein-Winther, Sidsel, additional, Leese, Florian, additional, Mann, David, additional, Marcel, Rémy, additional, Marcheggiani, Stefania, additional, Meissner, Kristian, additional, Mergen, Patricia, additional, Monnier, Olivier, additional, Narendja, Frank, additional, Neu, Diane, additional, Onofre Pinto, Veronica, additional, Pawlowska, Alina, additional, Pawlowski, Jan, additional, Petersen, Martin, additional, Poikane, Sandra, additional, Pont, Didier, additional, Renevier, Marie-Sophie, additional, Sandoy, Steinar, additional, Svensson, Jonas, additional, Trobajo, Rosa, additional, Tünde Zagyva, Andrea, additional, Tziortzis, Iakovos, additional, van der Hoorn, Berry, additional, Vasquez, Marlen Ines, additional, Walsh, Kerry, additional, Weigand, Alexander, additional, and Bouchez, Agnès, additional
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- 2022
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6. The mitochondrial genome of Nemalecium lighti (Hydrozoa, Leptothecata)
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Macher, Jan-Niklas, primary, Kayal, Ehsan, additional, Duijm, Elza, additional, van der Hoorn, Berry, additional, Montano, Simone, additional, and Speksnijder, Arjen, additional
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- 2021
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7. Key questions for next-generation of biomonitoring
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Makiola, Andreas, Compson, Zacchaeus G., Baird, Donald J, Barnes, Matthew, Boerlijst, Sam P, Bouchez, Agnes, Brennan, Georgina, Bush, Alex, Canard, Elsa, Cordier, Tristan, Creer, Simon, Curry, Allen, Dumbrell, Alex J, Gravel, Dominique, Hajibabaei, Mehrdad, van Der Hoorn, Berry, Jarne, Philippe, Jones, J.Iwan, Karimi, Battle, Keck, François, Kelly, Martyn, Knot, Ineke, Krol, Louie, Massol, François, Monk, Wendy A., Murphy, John, Pawlowski, Jan, Poisot, Timothée, M. Porter, Teresita, C. Randall, Kate, Ransome, Emma, Ravigné, Virginie, Raybould, Alan, Robin, Stephane, Schrama, Maarten, Schatz, Bertrand, Tamaddoni- Nezhad, Alireza, Trimbos, Krijn B., Vacher, Corinne, Vasselon, Valentin, Wood, Susie, Woodward, Guy, Bohan, David, Agroécologie [Dijon], Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Université Bourgogne Franche-Comté [COMUE] (UBFC)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Environment and Climate Change Canada @ Canadian Rivers Institute, Department of Biology, University of New Brunswick, NB, Canada, Centre for Environmental Genomics Applications, St. John’s, NL, Canada, Department of Natural Resources Management, Texas Tech University, Lubbock, TX, United States, Naturalis Biodiversity Center [Leiden], Institute of Environmental Sciences, Leiden University, Leiden, Netherlands, Centre Alpin de Recherche sur les Réseaux Trophiques et Ecosystèmes Limniques (CARRTEL), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), School of Natural Sciences, Bangor University, Bangor, United Kingdom, Lancaster Environment Centre, Lancaster University, Lancaster, United Kingdom, Institut de Génétique, Environnement et Protection des Plantes (IGEPP), Université de Rennes (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Université de Genève = University of Geneva (UNIGE), Canadian Rivers Institute, Biology, Forestry and Environmental Management, University of New Brunswick, Fredericton, NB, Canada, School of Biological Sciences, University of Essex, Colchester, United Kingdom, Département de Médecine Nucléaire et Radiobiologie - Université de Sherbrooke - Canada, Université de Sherbrooke (UdeS), Centre for Biodiversity Genomics and Department of Integrative Biology, University of Guelph, Guelph, ON, Canada, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Université Paul-Valéry - Montpellier 3 (UPVM)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom, Bowburn Consultancy, Durham, United Kingdom, Institute for Biodiversity and Ecosystem Dynamics, Department of Evolutionary and Population Biology, University of Amsterdam, Amsterdam The Netherlands, Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 (Evo-Eco-Paléo (EEP)), Université de Lille-Centre National de la Recherche Scientifique (CNRS), Faculty of Forestry and Environmental Management, University of New Brunswick, Fredericton, NB, Canada, Département de sciences biologiques, Université de Montréal, Montreal, QC, Canada, Great Lakes Forestry Centre, Canadian Forest Service, Natural Resources Canada, Sault Ste. Marie, ON, Canada, Imperial College London, Peuplements végétaux et bioagresseurs en milieu tropical (UMR PVBMT), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Université de La Réunion (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Syngenta Crop Protection AG, Basel, Switzerland, School of Social and Political Science, The University of Edinburgh, Edinburgh, United Kingdom, The Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Global Academy of Agriculture and Food Security, Edinburgh, United Kingdom, Mathématiques et Informatique Appliquées (MIA Paris-Saclay), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Surrey (UNIS), Biodiversité, Gènes & Communautés (BioGeCo), Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Agence Française pour la Biodiversité, Pôle R&D ECLA, Évian-les-Bains, France, Cawthron Institute, Nelson, New Zealand, Naturalis Biodiversity Center, Leiden, Netherlands, CARRTEL, USMB, INRA, Thonon-les-Bains, France, Institut National de la Recherche Agronomique (INRA)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-AGROCAMPUS OUEST, Department of Genetics and Evolution, University of Geneva, Science III, Geneva, Switzerland, Université Paul-Valéry - Montpellier 3 (UPVM)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 (Evo-Eco-Paléo), Department of Life Sciences, Silwood Park Campus, Imperial College London, London, United Kingdom, Mathématiques et Informatique Appliquées (MIA-Paris), and BIOGECO, INRA, Univ. Bordeaux, Pessac, France
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metabarcoding ,ecological networkseDNA ,ecological networks ,eDNA ,artificial intelligence ,biodiversity assessment ,[SHS]Humanities and Social Sciences - Abstract
International audience; Classical biomonitoring techniques have focused primarily on measures linked tovarious biodiversity metrics and indicator species. Next-generation biomonitoring (NGB)describes a suite of tools and approaches that allow the examination of a broaderspectrum of organizational levels—from genes to entire ecosystems. Here, we frame10 key questions that we envisage will drive the field of NGB over the next decade. Whilenot exhaustive, this list covers most of the key challenges facing NGB, and provides thebasis of the next steps for research and implementation in this field. These questionshave been grouped into current- and outlook-related categories, corresponding to theorganization of this paper.
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- 2020
8. Taxonomy, ecology and distribution of the mosquitoes (Diptera: Culicidae) of the Dutch Leeward Islands, with a key to the adults and fourth instar larvae
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van der Beek, Jordy G., primary, Dijkstra, Klaas-Douwe B., additional, van der Hoorn, Berry B., additional, Boerlijst, Sam P., additional, Busscher, Loes, additional, Kok, Maud L., additional, Braks, Marieta A.H., additional, Schaffner, Francis, additional, Davelaar, Gerald J., additional, Henry, Maria, additional, Hulshof, Koen, additional, Leslie, Teresa E., additional, and Schrama, Maarten, additional
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- 2020
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9. Key Questions for Next-Generation Biomonitoring
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Makiola, Andreas, primary, Compson, Zacchaeus G., additional, Baird, Donald J., additional, Barnes, Matthew A., additional, Boerlijst, Sam P., additional, Bouchez, Agnès, additional, Brennan, Georgina, additional, Bush, Alex, additional, Canard, Elsa, additional, Cordier, Tristan, additional, Creer, Simon, additional, Curry, R. Allen, additional, David, Patrice, additional, Dumbrell, Alex J., additional, Gravel, Dominique, additional, Hajibabaei, Mehrdad, additional, Hayden, Brian, additional, van der Hoorn, Berry, additional, Jarne, Philippe, additional, Jones, J. Iwan, additional, Karimi, Battle, additional, Keck, Francois, additional, Kelly, Martyn, additional, Knot, Ineke E., additional, Krol, Louie, additional, Massol, Francois, additional, Monk, Wendy A., additional, Murphy, John, additional, Pawlowski, Jan, additional, Poisot, Timothée, additional, Porter, Teresita M., additional, Randall, Kate C., additional, Ransome, Emma, additional, Ravigné, Virginie, additional, Raybould, Alan, additional, Robin, Stephane, additional, Schrama, Maarten, additional, Schatz, Bertrand, additional, Tamaddoni-Nezhad, Alireza, additional, Trimbos, Krijn B., additional, Vacher, Corinne, additional, Vasselon, Valentin, additional, Wood, Susie, additional, Woodward, Guy, additional, and Bohan, David A., additional
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- 2020
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10. Increased performance of DNA metabarcoding of macroinvertebrates by taxonomic sorting
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Beentjes, Kevin K., primary, Speksnijder, Arjen G. C. L., additional, Schilthuizen, Menno, additional, Hoogeveen, Marten, additional, Pastoor, Rob, additional, and van der Hoorn, Berry B., additional
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- 2019
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11. The effects of spatial and temporal replicate sampling on eDNA metabarcoding
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Beentjes, Kevin K., primary, Speksnijder, Arjen G. C. L., additional, Schilthuizen, Menno, additional, Hoogeveen, Marten, additional, and van der Hoorn, Berry B., additional
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- 2019
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12. How Does eDNA Compare to Traditional Trapping? Detecting Mosquito Communities in South-African Freshwater Ponds
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Krol, Louie, primary, Van der Hoorn, Berry, additional, Gorsich, Erin E., additional, Trimbos, Krijn, additional, Bodegom, Peter M. van, additional, and Schrama, Maarten, additional
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- 2019
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13. Field Evaluation of DNA Based Biodiversity Monitoring of Caribbean Mosquitoes
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Boerlijst, Sam P., primary, Trimbos, Krijn B., additional, Van der Beek, Jordy G., additional, Dijkstra, Klaas Douwe B., additional, Van der Hoorn, Berry B., additional, and Schrama, Maarten, additional
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- 2019
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14. The influence of macroinvertebrate abundance on the assessment of freshwater quality in The Netherlands
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Beentjes, Kevin K., primary, Speksnijder, Arjen G. C. L., additional, Schilthuizen, Menno, additional, Schaub, Bartholomeus E.M., additional, and van der Hoorn, Berry B., additional
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- 2018
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15. DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe
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Leese, Florian, primary, Altermatt, Florian, additional, Bouchez, Agnès, additional, Ekrem, Torbjørn, additional, Hering, Daniel, additional, Meissner, Kristian, additional, Mergen, Patricia, additional, Pawlowski, Jan, additional, Piggott, Jeremy, additional, Rimet, Frédéric, additional, Steinke, Dirk, additional, Taberlet, Pierre, additional, Weigand, Alexander, additional, Abarenkov, Kessy, additional, Beja, Pedro, additional, Bervoets, Lieven, additional, Björnsdóttir, Snaedís, additional, Boets, Pieter, additional, Boggero, Angela, additional, Bones, Atle, additional, Borja, Ángel, additional, Bruce, Kat, additional, Bursić, Vojislava, additional, Carlsson, Jens, additional, Čiampor, Fedor, additional, Čiamporová-Zatovičová, Zuzana, additional, Coissac, Eric, additional, Costa, Filipe, additional, Costache, Marieta, additional, Creer, Simon, additional, Csabai, Zoltán, additional, Deiner, Kristy, additional, DelValls, Ángel, additional, Drakare, Stina, additional, Duarte, Sofia, additional, Eleršek, Tina, additional, Fazi, Stefano, additional, Fišer, Cene, additional, Flot, Jean-François, additional, Fonseca, Vera, additional, Fontaneto, Diego, additional, Grabowski, Michael, additional, Graf, Wolfram, additional, Guðbrandsson, Jóhannes, additional, Hellström, Micaela, additional, Hershkovitz, Yaron, additional, Hollingsworth, Peter, additional, Japoshvili, Bella, additional, Jones, John, additional, Kahlert, Maria, additional, Kalamujic Stroil, Belma, additional, Kasapidis, Panagiotis, additional, Kelly, Martyn, additional, Kelly-Quinn, Mary, additional, Keskin, Emre, additional, Kõljalg, Urmas, additional, Ljubešić, Zrinka, additional, Maček, Irena, additional, Mächler, Elvira, additional, Mahon, Andrew, additional, Marečková, Marketa, additional, Mejdandzic, Maja, additional, Mircheva, Georgina, additional, Montagna, Matteo, additional, Moritz, Christian, additional, Mulk, Vallo, additional, Naumoski, Andreja, additional, Navodaru, Ion, additional, Padisák, Judit, additional, Pálsson, Snæbjörn, additional, Panksep, Kristel, additional, Penev, Lyubomir, additional, Petrusek, Adam, additional, Pfannkuchen, Martin, additional, Primmer, Craig, additional, Rinkevich, Baruch, additional, Rotter, Ana, additional, Schmidt-Kloiber, Astrid, additional, Segurado, Pedro, additional, Speksnijder, Arjen, additional, Stoev, Pavel, additional, Strand, Malin, additional, Šulčius, Sigitas, additional, Sundberg, Per, additional, Traugott, Michael, additional, Tsigenopoulos, Costas, additional, Turon, Xavier, additional, Valentini, Alice, additional, van der Hoorn, Berry, additional, Várbíró, Gábor, additional, Vasquez Hadjilyra, Marlen, additional, Viguri, Javier, additional, Vitonytė, Irma, additional, Vogler, Alfried, additional, Vrålstad, Trude, additional, Wägele, Wolfgang, additional, Wenne, Roman, additional, Winding, Anne, additional, Woodward, Guy, additional, Zegura, Bojana, additional, and Zimmermann, Jonas, additional
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- 2016
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16. A quantitative assessment of the vegetation types on the island of St. Eustatius, Dutch Caribbean
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van Andel, Tinde, primary, van der Hoorn, Berry, additional, Stech, Michael, additional, Arostegui, Saskia Bantjes, additional, and Miller, Jeremy, additional
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- 2016
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