10 results on '"Shah, Nigam H."'
Search Results
2. Use of Electronic Health Record Data for Drug Safety Signal Identification: A Scoping Review.
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Davis, Sharon E., Zabotka, Luke, Desai, Rishi J., Wang, Shirley V., Maro, Judith C., Coughlin, Kevin, Hernández-Muñoz, José J., Stojanovic, Danijela, Shah, Nigam H., and Smith, Joshua C.
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ELECTRONIC health records , *MEDICATION safety , *LITERATURE reviews , *DATA recorders & recording , *DATA mining , *DATA modeling - Abstract
Introduction: Pharmacovigilance programs protect patient health and safety by identifying adverse event signals through postmarketing surveillance of claims data and spontaneous reports. Electronic health records (EHRs) provide new opportunities to address limitations of traditional approaches and promote discovery-oriented pharmacovigilance. Methods: To evaluate the current state of EHR-based medication safety signal identification, we conducted a scoping literature review of studies aimed at identifying safety signals from routinely collected patient-level EHR data. We extracted information on study design, EHR data elements utilized, analytic methods employed, drugs and outcomes evaluated, and key statistical and data analysis choices. Results: We identified 81 eligible studies. Disproportionality methods were the predominant analytic approach, followed by data mining and regression. Variability in study design makes direct comparisons difficult. Studies varied widely in terms of data, confounding adjustment, and statistical considerations. Conclusion: Despite broad interest in utilizing EHRs for safety signal identification, current efforts fail to leverage the full breadth and depth of available data or to rigorously control for confounding. The development of best practices and application of common data models would promote the expansion of EHR-based pharmacovigilance. [ABSTRACT FROM AUTHOR]
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- 2023
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3. A comparison of approaches to improve worst-case predictive model performance over patient subpopulations.
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Pfohl, Stephen R., Zhang, Haoran, Xu, Yizhe, Foryciarz, Agata, Ghassemi, Marzyeh, and Shah, Nigam H.
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PREDICTION models , *ELECTRONIC health records , *HOSPITAL mortality , *ROBUST optimization , *HOSPITAL statistics - Abstract
Predictive models for clinical outcomes that are accurate on average in a patient population may underperform drastically for some subpopulations, potentially introducing or reinforcing inequities in care access and quality. Model training approaches that aim to maximize worst-case model performance across subpopulations, such as distributionally robust optimization (DRO), attempt to address this problem without introducing additional harms. We conduct a large-scale empirical study of DRO and several variations of standard learning procedures to identify approaches for model development and selection that consistently improve disaggregated and worst-case performance over subpopulations compared to standard approaches for learning predictive models from electronic health records data. In the course of our evaluation, we introduce an extension to DRO approaches that allows for specification of the metric used to assess worst-case performance. We conduct the analysis for models that predict in-hospital mortality, prolonged length of stay, and 30-day readmission for inpatient admissions, and predict in-hospital mortality using intensive care data. We find that, with relatively few exceptions, no approach performs better, for each patient subpopulation examined, than standard learning procedures using the entire training dataset. These results imply that when it is of interest to improve model performance for patient subpopulations beyond what can be achieved with standard practices, it may be necessary to do so via data collection techniques that increase the effective sample size or reduce the level of noise in the prediction problem. [ABSTRACT FROM AUTHOR]
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- 2022
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4. A ‘Green Button’ For Using Aggregate Patient Data At The Point Of Care.
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Longhurst, Christopher A., Harrington, Robert A., and Shah, Nigam H.
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CLINICAL medicine research , *SCIENTIFIC observation , *RISK assessment , *ALGORITHMS , *CLINICAL medicine , *COST control , *DECISION support systems , *INFORMATION resources management , *INFORMATION storage & retrieval systems , *MEDICAL databases , *LEARNING strategies , *ONLINE information services , *EVIDENCE-based medicine , *HEALTH Insurance Portability & Accountability Act , *RETROSPECTIVE studies , *ELECTRONIC health records , *INDIVIDUALIZED medicine - Abstract
Randomized controlled trials have traditionally been the gold standard against which all other sources of clinical evidence are measured. However, the cost of conducting these trials can be prohibitive. In addition, evidence from the trials frequently rests on narrow patient-inclusion criteria and thus may not generalize well to real clinical situations. Given the increasing availability of comprehensive clinical data in electronic health records (EHRs), some health system leaders are now advocating for a shift away from traditional trials and toward large-scale retrospective studies, which can use practice-based evidence that is generated as a by-product of clinical processes. Other thought leaders in clinical research suggest that EHRs should be used to lower the cost of trials by integrating point-of-care randomization and data capture into clinical processes. We believe that a successful learning health care system will require both approaches, and we suggest a model that resolves this escalating tension: a “green button” function within EHRs to help clinicians leverage aggregate patient data for decision making at the point of care. Giving clinicians such a tool would support patient care decisions in the absence of gold-standard evidence and would help prioritize clinical questions for which EHR-enabled randomization should be carried out. The privacy rule in the Health Insurance Portability and Accountability Act (HIPAA) of 1996 may require revision to support this novel use of patient data. [ABSTRACT FROM AUTHOR]
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- 2014
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5. Development and validation of a prognostic model predicting symptomatic hemorrhagic transformation in acute ischemic stroke at scale in the OHDSI network.
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Wang, Qiong, Reps, Jenna M., Kostka, Kristin Feeney, Ryan, Patrick B., Zou, Yuhui, Voss, Erica A., Rijnbeek, Peter R., Chen, RuiJun, Rao, Gowtham A., Morgan Stewart, Henry, Williams, Andrew E., Williams, Ross D., Van Zandt, Mui, Falconer, Thomas, Fernandez-Chas, Margarita, Vashisht, Rohit, Pfohl, Stephen R., Shah, Nigam H., Kasthurirathne, Suranga N., and You, Seng Chan
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AMBULANCES , *RECEIVER operating characteristic curves , *CEREBRAL infarction , *MODEL validation , *ELECTRONIC health records , *STROKE , *CANCER prognosis - Abstract
Background and purpose: Hemorrhagic transformation (HT) after cerebral infarction is a complex and multifactorial phenomenon in the acute stage of ischemic stroke, and often results in a poor prognosis. Thus, identifying risk factors and making an early prediction of HT in acute cerebral infarction contributes not only to the selections of therapeutic regimen but also, more importantly, to the improvement of prognosis of acute cerebral infarction. The purpose of this study was to develop and validate a model to predict a patient's risk of HT within 30 days of initial ischemic stroke. Methods: We utilized a retrospective multicenter observational cohort study design to develop a Lasso Logistic Regression prediction model with a large, US Electronic Health Record dataset which structured to the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM). To examine clinical transportability, the model was externally validated across 10 additional real-world healthcare datasets include EHR records for patients from America, Europe and Asia. Results: In the database the model was developed, the target population cohort contained 621,178 patients with ischemic stroke, of which 5,624 patients had HT within 30 days following initial ischemic stroke. 612 risk predictors, including the distance a patient travels in an ambulance to get to care for a HT, were identified. An area under the receiver operating characteristic curve (AUC) of 0.75 was achieved in the internal validation of the risk model. External validation was performed across 10 databases totaling 5,515,508 patients with ischemic stroke, of which 86,401 patients had HT within 30 days following initial ischemic stroke. The mean external AUC was 0.71 and ranged between 0.60–0.78. Conclusions: A HT prognostic predict model was developed with Lasso Logistic Regression based on routinely collected EMR data. This model can identify patients who have a higher risk of HT than the population average with an AUC of 0.78. It shows the OMOP CDM is an appropriate data standard for EMR secondary use in clinical multicenter research for prognostic prediction model development and validation. In the future, combining this model with clinical information systems will assist clinicians to make the right therapy decision for patients with acute ischemic stroke. [ABSTRACT FROM AUTHOR]
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- 2020
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6. Enhanced Quality Measurement Event Detection: An Application to Physician Reporting.
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Tamang, Suzanne R., Hernandez-Boussard, Tina, Gyang Ross, Elsie, Gaskin, Gregory, Patel, Manali I., and Shah, Nigam H.
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PHYSICIANS , *ELECTRONIC health records , *QUALITY control charts , *GRAND strategy (Political science) - Abstract
The wide-scale adoption of electronic health records (EHR)s has increased the availability of routinely collected clinical data in electronic form that can be used to improve the reporting of quality of care. However, the bulk of information in the EHR is in unstructured form (e.g., free-text clinical notes) and not amenable to automated reporting. Traditional methods are based on structured diagnostic and billing data that provide efficient, but inaccurate or incomplete summaries of actual or relevant care processes and patient outcomes. To assess the feasibility and benefit of implementing enhanced EHR-based physician quality measurement and reporting, which includes the analysis of unstructured free-text clinical notes, we conducted a retrospective study to compare traditional and enhanced approaches for reporting ten physician quality measures from multiple National Quality Strategy domains. We found that our enhanced approach enabled the calculation of five Physician Quality and Performance System measures not measurable in billing or diagnostic codes and resulted in over a five-fold increase in event at an average precision of 88 percent (95 percent CI: 83-93 percent). Our work suggests that enhanced EHR-based quality measurement can increase event detection for establishing value-based payment arrangements and can expedite quality reporting for physician practices, which are increasingly burdened by the process of manual chart review for quality reporting. [ABSTRACT FROM AUTHOR]
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- 2017
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7. Characterizing treatment pathways at scale using the OHDSI network.
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Hripcsak, George, Ryan, Patrick B., Duke, Jon D., Shah, Nigam H., Park, Rae Woong, Huser, Vojtech, Suchard, Marc A., Schuemie, Martijn J., DeFalco, Frank J., Perotte, Adler, Banda, Juan M., Reich, Christian G., Schilling, Lisa M., Matheny, Michael E., Meeker, Daniella, Pratt, Nicole, and Madigan, David
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ELECTRONIC health records , *INFORMATION storage & retrieval systems , *MEDICAL databases , *COMPUTERS in the health care industry , *ELECTRONIC records , *MEDICAL records - Abstract
Observational research promises to complement experimental research by providing large, diverse populations that would be infeasible for an experiment. Observational research can test its own clinical hypotheses, and observational studies also can contribute to the design of experiments and inform the generalizability of experimental research. Understanding the diversity of populations and the variance in care is one component. In this study, the Observational Health Data Sciences and Informatics (OHDSI) collaboration created an international data network with 11 data sources from four countries, including electronic health records and administrative claims data on 250 million patients. All data were mapped to common data standards, patient privacy was maintained by using a distributed model, and results were aggregated centrally. Treatment pathways were elucidated for type 2 diabetesmellitus, hypertension, and depression. The pathways revealed that the world is moving toward more consistent therapy over time across diseases and across locations, but significant heterogeneity remains among sources, pointing to challenges in generalizing clinical trial results. Diabetes favored a single first-line medication, metformin, to a much greater extent than hypertension or depression. About 10% of diabetes and depression patients and almost 25% of hypertension patients followed a treatment pathway that was unique within the cohort. Aside from factors such as sample size and underlying population (academic medical center versus general population), electronic health records data and administrative claims data revealed similar results. Large-scale international observational research is feasible. [ABSTRACT FROM AUTHOR]
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- 2016
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8. Rapid identification of slow healing wounds.
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Jung, Kenneth, Covington, Scott, Sen, Chandan K., Januszyk, Michael, Kirsner, Robert S., Gurtner, Geoffrey C., and Shah, Nigam H.
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CHRONIC wounds & injuries , *PRESSURE ulcers , *COMPUTER simulation , *CONFIDENCE intervals , *DIABETIC neuropathies , *FORECASTING , *LONGITUDINAL method , *MEDICAL cooperation , *RESEARCH , *RESEARCH funding , *TIME , *WOUND healing , *TRAUMATOLOGY diagnosis , *WOUND care , *LOGISTIC regression analysis , *DATA analysis software , *ELECTRONIC health records , *DESCRIPTIVE statistics , *PROGNOSIS , *INJURY risk factors ,LEG ulcers ,RESEARCH evaluation - Abstract
Chronic nonhealing wounds have a prevalence of 2% in the United States, and cost an estimated $50 billion annually. Accurate stratification of wounds for risk of slow healing may help guide treatment and referral decisions. We have applied modern machine learning methods and feature engineering to develop a predictive model for delayed wound healing that uses information collected during routine care in outpatient wound care centers. Patient and wound data was collected at 68 outpatient wound care centers operated by Healogics Inc. in 26 states between 2009 and 2013. The dataset included basic demographic information on 59,953 patients, as well as both quantitative and categorical information on 180,696 wounds. Wounds were split into training and test sets by randomly assigning patients to training and test sets. Wounds were considered delayed with respect to healing time if they took more than 15 weeks to heal after presentation at a wound care center. Eleven percent of wounds in this dataset met this criterion. Prognostic models were developed on training data available in the first week of care to predict delayed healing wounds. A held out subset of the training set was used for model selection, and the final model was evaluated on the test set to evaluate discriminative power and calibration. The model achieved an area under the curve of 0.842 (95% confidence interval 0.834-0.847) for the delayed healing outcome and a Brier reliability score of 0.00018. Early, accurate prediction of delayed healing wounds can improve patient care by allowing clinicians to increase the aggressiveness of intervention in patients most at risk. [ABSTRACT FROM AUTHOR]
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- 2016
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9. Prediction of Major Depressive Disorder Following Beta-Blocker Therapy in Patients with Cardiovascular Diseases.
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Jin, Suho, Kostka, Kristin, Posada, Jose D., Kim, Yeesuk, Seo, Seung In, Lee, Dong Yun, Shah, Nigam H., Roh, Sungwon, Lim, Young-Hyo, Chae, Sun Geu, Jin, Uram, Son, Sang Joon, Reich, Christian, Rijnbeek, Peter R., Park, Rae Woong, and You, Seng Chan
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MENTAL depression , *CARDIOVASCULAR diseases , *RECEIVER operating characteristic curves , *ELECTRONIC health records - Abstract
Incident depression has been reported to be associated with poor prognosis in patients with cardiovascular disease (CVD), which might be associated with beta-blocker therapy. Because early detection and intervention can alleviate the severity of depression, we aimed to develop a machine learning (ML) model predicting the onset of major depressive disorder (MDD). A model based on L1 regularized logistic regression was trained against the South Korean nationwide administrative claims database to identify risk factors for the incident MDD after beta-blocker therapy in patients with CVD. We identified 50,397 patients initiating beta-blockers for CVD, with 774 patients developing MDD within 365 days after initiating beta-blocker therapy. An area under the receiver operating characteristic curve (AUC) of 0.74 was achieved. A history of non-selective beta-blockers and factors related to anxiety disorder, sleeping problems, and other chronic diseases were the most strong predictors. AUCs of 0.62–0.71 were achieved in the external validation conducted on six independent electronic health records and claims databases in the USA and South Korea. In conclusion, an ML model that identifies patients at high-risk for incident MDD was developed. Application of ML to identify susceptible patients for adverse events of treatment may serve as an important approach for personalized medicine. [ABSTRACT FROM AUTHOR]
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- 2020
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10. Improving palliative care with deep learning.
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Avati, Anand, Jung, Kenneth, Harman, Stephanie, Downing, Lance, Ng, Andrew, and Shah, Nigam H.
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PALLIATIVE treatment , *ELECTRONIC health records , *MACHINE learning , *ARTIFICIAL neural networks , *DECISION making in clinical medicine , *MEDICAL personnel - Abstract
Background: Access to palliative care is a key quality metric which most healthcare organizations strive to improve. The primary challenges to increasing palliative care access are a combination of physicians over-estimating patient prognoses, and a shortage of palliative staff in general. This, in combination with treatment inertia can result in a mismatch between patient wishes, and their actual care towards the end of life.Methods: In this work, we address this problem, with Institutional Review Board approval, using machine learning and Electronic Health Record (EHR) data of patients. We train a Deep Neural Network model on the EHR data of patients from previous years, to predict mortality of patients within the next 3-12 month period. This prediction is used as a proxy decision for identifying patients who could benefit from palliative care.Results: The EHR data of all admitted patients are evaluated every night by this algorithm, and the palliative care team is automatically notified of the list of patients with a positive prediction. In addition, we present a novel technique for decision interpretation, using which we provide explanations for the model's predictions.Conclusion: The automatic screening and notification saves the palliative care team the burden of time consuming chart reviews of all patients, and allows them to take a proactive approach in reaching out to such patients rather then relying on referrals from the treating physicians. [ABSTRACT FROM AUTHOR]- Published
- 2018
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