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Aims: Contamination with filamentous fungi reduces the quality of cocoa beans and poses a health risk for consumers due to the potential accumulation of mycotoxins. The aim of this study was to develop antifungal Bacillus cultures for cocoa beans fermentation. Methods and Results: Antifungal activity of 7 Bacillus isolates was investigated using overlay technique. Solid culture media inoculated with bacterial and fungal isolates were cultivated under aerobic conditions at 30 ºC for 5 days. The Bacillus strain with strong antifungal activity was studied and inoculated to 18 kg box fermentations cocoa beans in Cote d'Ivoire in three time-independent replications each including a spontaneous control fermentation. The comparison of inoculated and spontaneous fermentation processes revealed that the Bacillus thuringiensis strain ATCC 10792 don't affected the fermentation process and cocoa bean quality. The anti-fungal in vivo assays revealed that the Bacillus thuringiensis strain ATCC 10792 completely inhibited growth of all fungi on the surface of cocoa beans. The result showed that sensory evaluation of chocolates is not significant differences for all treatment. The sensory evaluation of control and chocolates made from the inoculated cocoa beans with Bacillus showed excellent sensory quality, demonstrating that Bacillus thuringiensis strain ATCC 10792 did not affect aroma, texture and appearance of chocolate. Conclusion: From this study, it is revealed that the addition of Bacillus thuringiensis strain ATCC 10792 during fermentation cocoa beans suppress fungal growth and improve the quality of cocoa beans. Therefore, the anti-fungal culture Bacillus thuringiensis strain ATCC 10792 is recommended for future applications and its capacity to limit fungal growth during industrial-scale cocoa bean fermentation should be investigated in further studies.

Aims: Mold contamination of foods especially by mycotoxin producing fungi is not only a global food quality concern for food manufacturers, but it also constitutes a high risk for human and animal health resulting in massive economic losses globally. This study investigated the effect of Lactic Acid Bacteria (LAB) on the growth of Aspergillus carbonarius strains and their production of ochratoxin A (OTA). Methodology: Seven fresh coffee cherry and 9 dry coffee cherry samples were collected from Man, Daloa and Akoupé 3 main coffee producing regions in Côte d’Ivoire. LAB were isolated from fresh coffee cherries while mold strains were from both fresh and dry coffee cherry. The inhibitory effect against mold growth and the ability for OTA removal of selected LAB strains were tested successively in vitro and then during coffee cherry primary postharvest processing before evaluating their influence on sensory quality of beverage. OTA production ability of molds strains are studied using both solid (CYA) and liquid (CYB) Cazapeck Yeast medium. Results: About 34 fungal isolates belonging to Aspergillus and Penicillium genus were studied for their OTA production using the agar plug technique and HPLC-FD. Five A. carbonarius strains were capable of OTA production between 15.9 and 83mg.kg-1.Out of seven isolates of Lactobacillus plantarum, two were successful in inhibition of mycelial growthproduced fungicidal activity; five were successful in retarding it produced fungistatical activity All of L. plantarum isolates exhibited OTA reduction ability at about 99 %. The inoculation of two highest anti-ochratoxigenic LAB to fermenting coffee cherries resulted in great inhibition of mold growth and OTA contents reduction varying from 63.2 to 82.2%. The addition of LAB to coffee cherries did not influence the sensory attributes of the beverages produced thereof. Conclusion: This study highlighted that LAB are very promising biological candidates for reduction of mold contamination and removal OTA from coffee cherry during primary postharvest processing.

Fungal toxins can have various adverse health effects, including carcinogenic, teratogenic or hepatotoxic impacts. In addition, fungal alteration has also a negative impact on agricultural plant production. The use of chemical fungicides to control mycotoxin contamination is increasingly controversial and regulated. More environmentally friendly methods are therefore being explored. Essential oils, as compounds extracted from plants, are liquids whose specific aromatic compounds give each essential oil its own unique characteristics. Due to their rich chemical composition, essential oils (EOs) have many interesting properties, including antifungal activities. The objective of the present study was to analyze volatile chemical composition of EOs (Cymbopogon schoenanthus, Cymbopogon nardus and Eucalyptus camaldulensis) by GC/MS and to investigate their effects on the growth, sporulation and mycotoxin production of Aspergillus flavus, Aspergillus carbonarius and Fusarium verticillioides (aflatoxin B1, ochratoxin A and fumonisin B1, respectively). In addition, EOs influence on aflatoxin B1 (AFB1) and fumonisin B1 (FB1) biosynthesis pathways was explored using real-time qRT-PCR. The results obtained in vitro, by direct contact with the EOs and by diffusion of their volatile compounds, showed that the essential oils had inhibitory effects on the growth and the production of mycotoxins of the 3 fungal strains and modified the expression of some toxin synthesis genes. We conclude that the recorded effects were dependent on the combined effects of the EOs type, the fungal strains and the doses studied.

Cocoa pod-opening delay and bean fermentation promote the organoleptic quality of chocolate. The present research investigated the changes in the volatile fingerprint of cocoa harvested at a traditional plantation. Cocoa beans extracted from 2-days pod-opening delay were simultaneously fermented for 5 days using container and then sun-dried to 7-8% moisture content at five different locations: Akoupé, San Pedro, Soubré, Djekanou and Daloa. The aromatic analysis were done on cocoa using the HS-SPME-GC/MS technique. Professional panelists evaluated the sensory perceptions of the chocolate. The results shows that cocoa fermented in both Daloa and Soubré regions were differentiated by 2,3-butanediol while those processed in other regions presented highest acetoin content. However, fermented cocoa from Soubré region exhibited most amount of 2,3-butanediol, diacetate A whereas 2,3,5,6-tetramethylpyrazine differentiated those from Daloa region. Sensory properties of chocolate were not linked to the aromatic compound precursors profile of beans. The fermentation performed in San Pédro region promote both the generation of more desirable aromatic compounds of cocoa and sensory attributes of the finished chocolate. The fermentation location generates a greater differentiation of the volatile fingerprint of cocoa and the sensory perceptions of the finished chocolate.

The aim of this study was to evaluate the interactions between wheat plant (spikelets and straws), a strain of mycotoxigenic pathogen Fusarium graminearum and commercial biocontrol agents (BCAs). The ability of BCAs to colonize plant tissue and inhibit the pathogen or its toxin production was observed throughout two phases of the life cycle of pathogens in natural conditions (colonization and survival). All evaluated BCAs showed effective reduction capacities of pathogenic traits. During establishment and the expansion stage, BCAs provoked an external growth reduction of F. graminearum (77–93% over the whole kinetic studied) and mycotoxin production (98–100% over the whole kinetic studied). Internal growth of pathogen was assessed with digital droplet polymerase chain reaction (ddPCR) and showed a very strong reduction in the colonization of the internal tissues of the spikelet due to the presence of BCAs (98% on average). During the survival stage, BCAs prevented the formation of conservation perithecia of the pathogen on wheat straw (between 88 and 98% of perithecia number reduction) and showed contrasting actions on the ascospores they contain, or perithecia production (−95% on average) during survival form. The mechanisms involved in these different interactions between F. graminearum and BCAs on plant matrices at different stages of the pathogen’s life cycle were based on a reduction of toxins, nutritional and/or spatial competition, or production of anti-microbial compounds.

The aim of this study was to develop a set of experiments to screen and decipher the mechanisms of biocontrol agents (BCAs), isolated from commercial formulation, against two major mycotoxigenic fungi in cereals, Fusarium graminearum and Fusarium verticillioides. These two phytopathogens produce mycotoxins harmful to human and animal health and are responsible for the massive use of pesticides, for the protection of cereals. It is therefore essential to better understand the mechanisms of action of alternative control strategies such as the use of BCAs in order to optimize their applications. The early and late stages of interaction between BCAs and pathogens were investigated from germination of spores to the effects on perithecia (survival form of pathogen). The analysis of antagonist activities of BCAs revealed different strategies of biocontrol where chronological, process combination and specialization aspects of interactions are discussed. Streptomyces griseoviridis main strategy is based on antibiosis with the secretion of several compounds with anti-fungal and anti-germination activity, but also a mixture of hydrolytic enzymes to attack pathogens, which compensates for an important deficit in terms of spatial colonization capacity. It has good abilities in terms of nutritional competition. Trichoderma asperellum is capable of activating a very wide range of defenses and attacks combining the synthesis of various antifungal compounds (metabolite, enzymes, VOCs), with different targets (spores, mycelium, mycotoxins), and direct action by mycoparasitism and mycophagy. Concerning Pythium oligandrum, its efficiency is mainly due to its strong capacity to colonize the environment, with a direct action via microbial predation, stimulation of its reproduction at the contact of pathogens and the reduction of perithecia formation.

Fungal pathogens are an international concern regarding their impact on numerous crops with diseases such as the Fusarium wilt, grey molds, blue molds or downy mildews that cause colossal yield losses both at pre- and post-harvest stages all over the world. The fungal diseases are usually associated with the infection and accumulation of mycotoxins in plant products and derivate foods. Alternative approaches of biological control that are non-chemical and eco-friendly have been studied such as the crop rotations or the application of organic phyto-protective amendments using living organisms. Many different bacterial families have been identified but accounting for low abundance in the total communities. The participation of the predominant families in 3-day-old soil decreased after 28 days of incubation. The fungal community of the reference soil was more diversified as compared to the fungal communities of the amendments.

Ochratoxin A (OTA) is a secondary metabolite produced by fungal pathogens such as Penicillium verrucosum, which develops in food commodities during storage such as cereals, grapes, and coffee. It represents public health concerns due to its genotoxicity, carcinogenicity, and teratogenicity. The objective of this study was to evaluate the ability of actinobacteria and their metabolites to degrade OTA and/or to decrease its production. Sixty strains of actinobacteria were tested for their ability to prevent OTA formation by in vitro dual culture assays or with cell free extracts (CFEs). In dual culture, 17 strains strongly inhibited fungal growth, although it was generally associated with an increase in OTA specific production. Seventeen strains inhibited OTA specific production up to 4% of the control. Eleven actinobacteria CFEs reduced OTA specific production up to 62% of the control, while no substantial growth inhibition was observed except for two strains up to 72% of the control. Thirty-three strains were able to degrade OTA almost completely in liquid medium whereas only five were able to decrease it on solid medium, and two of them reduced OTA to an undetectable amount. Our results suggest that OTA decrease could be related to different strategies of degradation/metabolization by actinobacteria, through enzyme activities and secretion of secondary metabolites interfering with the OTA biosynthetic pathway. CFEs appeared to be ineffective at degrading OTA, raising interesting questions about the detoxification mechanisms. Common degradation by-products (e.g., OT&alpha, or L-&beta, phenylalanine) were searched by HPLC-MS/MS, however, none of them were found, which implies a different mechanism of detoxification and/or a subsequent degradation into unknown products.

In a sustainable development concern, the agricultural practices notably those to control the pathogenic and/or mycotoxigenic fungi that maintain the quality and the abundance of crops with respecting the ecosystems and public health are indispensable. Our study focuses on evaluating the biocontrol potential of the actinomycete microflora of some organic amendments against the phytopathogenic and mycotoxigenic Fusarium verticillioides. The inhibitory effect was assessed in term of growth and mycotoxin production (fumonisin FB1 and FB2) of F. verticillioides in the presence of amended soils and selected antagonist agents from the amendments. Results demonstrated that the amended soils with different organic amendments exhibited a higher inhibition rate of Fusarium verticillioides growth than the reference soil. They were able to inhibit the fungal pigment and spore productions which are the major mean of survival and dispersion of this fungus. The fumonisin production was strongly reduced by the metabolites produced by the amended soils’ microbiota, up to 68.7% and 92.5% for FB1 and FB2 respectively. Actinomycete strains isolated from these amendments were identified as Streptomyces and were also tested for their antifungal potential. The fungal growth was reduced up to more than 60% in the presence of extracellular metabolites of several Streptomyces strains. In confrontation assays, most of the Streptomyces strains inhibited strongly both fungal growth and fumonisin production. The FB1 and FB2 amounts were decreased at best, by up to 87.5% and 98.2% respectively, depending on the actinomycete strains and fungal culture time. These results are promising for the use of these biocontrol agents, and especially some actinomycete strains, as tools to reduce fumonisin contamination in cereal crops and derived products.

Cereals products enriched with leguminous or oleaginous are used in Burkina Faso as food complement or to avoid infant malnutrition. Infant formulas from cereals are consumed as food supplements after the weaning age. They are produced in Burkina Faso with a mixture of several cereals (maize, millet, rice, or sorghum), leguminous (bean), oleaginous (peanut, soya or sesame), sugar or salt and sometimes milk powder. The production is artisanal or semi-industrial. These infant foods from cereals should be free from mycotoxins and pathogenic bacteria. The objective of this work was to determine the occurrence of mycotoxins like aflatoxins, ochratoxin A and fumonisins in infant formulas and grains in Ouagadougou (Burkina Faso). The mycotoxins (aflatoxins, ochratoxin A and fumonisins) were determined by HPLC-FLD in 248 samples of infant formulas produced by the Recovery and Nutrition Education Centers (CRENs) and sold on the market places in Burkina Faso. Results showed that the majority of samples of infant formulas presented high levels of mycotoxins. The frequency of contaminated samples by aflatoxin B1, ochratoxin A and fumonisins in analyzed samples were 83.9% (167/199), 7.5% (15/199) and 1.5% (3/199), respectively. The highest values registered in infant formulas were 900, 6 and 3 times higher for aflatoxin B1 (EU limit: 0.1 μg/kg), ochratoxin A (EU limit: 0.5 μg/kg) and fumonisins (EU limit: 200 μg/kg), respectively, than the EU regulation limits (1881/2006). This study presents the first results concerning the safety assessment of infant formulas regarding mycotoxins in Burkina Faso.

International audience; The Streptomyces sp. strain AV05 isolated from an organic amendment was found to impact both growth and fumonisin production of Fusarium verticillioides during in vitro direct confrontation. In order to investigate the interactions between the Streptomyces sp. strain AV05 and F. verticillioides, a metabolomic approach was used. The study of the endometabolomes of the microorganisms was carried out in two different conditions: the microorganisms were cultivated alone or in confrontation. The aim of this study was to examine the modifications of the endometabolome of F. verticillioides in confrontation with the Streptomyces strain. The metabolites involved in these modifications were identified using 2D NMR. Many metabolites were found to be overproduced in confrontation assays with the Streptomyces strain, notably 16 proteinogenic amino acids, inosine, and uridine. This suggested that fungal metabolic pathways such as protein synthesis have been affected due to interaction. Thus, metabolomic studies, as well as proteomics or transcriptomics, are useful for deciphering the mechanisms of interactions between biological control agents and mycotoxigenic fungi. This comprehension is one of the key elements of the improvement of the selection and use of antagonistic agents.

'Kankankan' is a popular spice powder used to season roasted meat in Côte d'Ivoire. However, produced in a traditional way, the conditions of production and storage of kankankan favour the proliferation of mycotoxin-producing fungal strains. The aim of this study was to carry out an inventory of mycotoxin contamination of this spice powder and to assess risk exposure to consumers. In total, 75 samples of kankankan were collected from wholesalers (6), sellers of kankankan in the markets (35) and sellers of roasted meat (34) across three municipalities of Abidjan, the economic capital of Côte d'Ivoire. Ultra-high-performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) was used to detect and quantify nine different mycotoxins. Dietary exposure was calculated by using estimated daily intake (EDI), whereas risk characterisation was assessed using the margin of exposure (MOE) approach. Aflatoxins and fumonisins were found in 99% of samples assessed, while contamination with beauvericin was proportionally lowest (28%). At all the three types of actors within the food production chain (wholesalers, kankankan sellers and roasted meat sellers) the mean concentrations of aflatoxin B1 (AFB1) in samples exceeded the European standard for spice mixtures, with concentrations reaching up to 502 µg/kg. The estimated daily intakes of aflatoxins observed in the different populations were above the recommended level of 0.017 ng kg−1 b.w. day−1. The MOES values for adolescents and adults were 8.10 and 12.78, respectively, well below the safe margin of 10,000. The co-occurrence of mycotoxins in kankankan samples together with high aflatoxin exposure to consumers represent a potential risk to public health, calling for immediate risk management and education of kankankan producers and consumers.

The current study assesses the natural occurrence of mycotoxins and fungal metabolites in Tunisian Pearl millet. Investigations using a multi-mycotoxin liquid chromatography/electrospray ionization-tandem mass spectrometric (LC/ESI–MS/MS) method were carried out on a total of 220 pearl millet samples collected from farmers (n = 144) located in four different agroecological zones in Tunisia and from retail shops (n = 76). Results revealed fifty-seven regulated and emerging metabolites contaminating 91.4% of grain samples. Among major mycotoxins, both aflatoxin B1 (AFB1) and ochratoxin A (OTA) were the most prevalent at rate of 8.6% each and occurring at an average level of 106 and 69.4 μg/kg, respectively. All positives samples were significantly exceeding the European thresholds (5 and 3 μg/kg, respectively). Lower incidence (5.9%) of Zearalenone (ZEA) contaminated samples at levels below the authorized limits (100 μg/kg) was recorded. Pearl millet grains from the south coastal zone (CT.S) had significantly the highest mean AFB1 contamination (p < 0.05). Meanwhile, OTA was encountered only in CT.S zone. Furthermore, commercial samples showed higher OTA and ZEA mean concentrations than farmers samples (p < 0.05). As regards emerging mycotoxins, Fusarium mycotoxins including beauvericin (BEA), equisetin (EQUS), monoacetoxyscirpenol (MAS) and diacetoxyscirpenol (DAS) were detected in 43.2%, 43.2%, 11.4% and 10.5% of positive samples, respectively. Furthermore, 12.7%, 50.9%, 53.2% and 14.1% of grains were contaminated with Alternaria mycotoxins namely alternariol (AOH), alternariolmonomethyl ether (AME), tentoxin (TEN) and tenuazonic acid (TA), respectively. The majority of emerging Fusarium and Alternaria mycotoxins mean levels were significantly higher in grains from north coastal area (p < 0.01). The present study highlighted a wide range of mycotoxins in Tunisian pearl millet with a different mycotoxin patterns within the agroecological zones.

The actinobacteria Streptomyces sp. AV05 appears to be a potential biocontrol agent (BCA) against mycotoxigenic fungi. It was found to significantly inhibit F. verticillioides growth and mycotoxin production during their co-cultivation. F. verticillioides growth was durably affected while the decrease of the toxin production levels was reversible, suggesting different BCA actions. The study of both transcriptomes brought useful information on the microbial interaction. RNA-seq data indicated that the dual interaction modified genetic expression of both microorganisms as 18.5 % of the genes were differentially expressed for the fungus against 3.8 % for the actinobacteria. Fungal differentially expressed genes (DEGs) were equally up and down regulated while bacterial ones were mainly upregulated. We especially focused the analysis of DEGs on fungal defense reaction to bacterial attack. For example, if this potential BCA implements a strategy of antibiosis with the over expression of 'siderophore-interacting protein' linked to the production of bacteriocins, the fungus in a state of stress is able to adapt its metabolism by up-regulation of amidase. It could correspond to the induction of resistance gene clusters and suggest a detoxification process. Moreover fumonisins-related pathway appears underexpressed in the presence of Streptomyces that explain the reduction of fumonisin accumulation observed.

Phytopathogenic and/or mycotoxigenic filamentous fungi are involved in a great number of plant diseases that cause yield and quality losses of crops. Besides the economic damages, these fungi produce mycotoxins that present health risks for humans and animals who consume contaminated foods. The most dangerous mycotoxins in the agriculture and the food industry that are regulated in European Union (trichothecenes especially deoxynivalenol, fumonisins, aflatoxins and ochratoxin A) are produced by three main fungal genera ( Fusarium, Aspergillus and Penicillium ). Many approaches have been applied to prevent and manage the phytopathogenic and/or mycotoxigenic fungi. However, these methods involve the use of chemical inputs that are harmful for humans, animals and environment. In a concern of sustainable development, the application of biocontrol has been considered for addressing this problem in a more environmentally friendly way. This review considered the incidence of the three fungal genera and their mycotoxins in crops and in foodstuff. The impacts of the fungal contamination and the toxin accumulation were reported. Besides, the biological control means against these pathogens were reviewed. Among them, organic amendments showed to be effective in both producing antifungal activities and reinforcing plant health.

The effects of light at different wavelengths and photoperiod on growth and ochratoxin A production of Aspergillus carbonarius and Aspergillus westerdijkiae were studied: far-red (740 nm), red (625 nm), blue (445 nm), and UV-A (366 nm). Fungal growth was not significantly affected by photoperiod or light wavelength; the only exception was A. westerdijkiae which showed reduced growth under UV-A light (366 nm). Short-wavelength blue light (445 nm) and UV-A light caused a reduction in ochratoxin A production of both fungal species. However, long-wavelength red light (625 nm) and far-red light (740 nm) reduced ochratoxin A production only in A. westerdijkiae but not in A. carbonarius. It is believed that this difference in reactivity to light is due to differences in the melanin content of the two fungal species: A. carbonarius is a black fungus with higher melanin content than A. westerdijkiae, a yellow fungus. Other possible explanations for the reduction of ochratoxin A production by light were also discussed.

Ochratoxin A (OTA) is a nephrotoxic, teratogenic, immunotoxic, and carcinogenic mycotoxin which is produced in tropical zones mainly by Aspergillus carbonarius, A. niger, A. ochraceus, and A. westerdijkiae. A. ochraceus and A. westerdijkiae species are phenotypically and genomically very close but A. westerdijkiae produce OTA at a very higher level than A. ochraceus. These species have been differentiated recently. The DNA primer pairs which were drawn so far are not specific and a genomic region of the same size is amplified for both species or they are too specific, and in this case, the DNA of a single species is amplified. To help preventing OTA contamination of foodstuffs, the PCR‐DGGE (Denaturing Gradient Gel Electrophoresis) method was used to discriminate between A. ochraceus and A. westerdijkiae DNA fragments of the same size but with different sequences and thus faster access to a diagnosis of the toxigenic potential of the fungal microflora. The proposed methodology was able to differentiate A. westerdijkiae from A. ochraceus with only one primer pairs in a single run. A calibration based on initial DNA content was obtained from image analysis of the DGGE gels and a method of quantification of the two strains was proposed.

The prevalence of diarrheal diseases in children aged from 6 to 24 months in Burkina Faso is 38%. These diarrheas may be due to the consumption of contaminated weaning food. Therefore, the microbiological quality of follow up infant flours used as supplement foods is a key-point to reduce children diseases. In this study, the microbiological safety of locally-produced infant flours was investigated. One hundred and ninety-nine (199) samples were collected mainly in retails outlets and in Recovery and Nutrition Education Centers. According to the Burkina Faso regulations, microbiological analyses were carried out for Total Aerobic Mesophilic Flora (TAMF), thermotolerant coliforms, Salmonella spp. and yeasts/molds. The bacterial and fungal isolates were identified using phenotypic and genotypic methods and the study of the production of mycotoxins was carried out from the fungal isolates. In collected samples, the TAMF count ranged from 0 to 1.8 × 106 CFU/g with a total average of 6.3 × 104 CFU/g. About 2% of the samples had a microbial load exceeding the standards (105 CFU/g). No Salmonella spp. was isolated in the final infant flours. However, the presence of Enterobacteriaceae (Klebsiella spp. Enterobacter spp. and Cronobacter spp.) was detected and molecular characterization revealed also the presence of fungal species of the genus Aspergillus spp., Penicillium spp. and Fusarium spp. Some of these species were found to produce aflatoxins, ochratoxin A and fumonisins, which are potential carcinogenic toxins. These results demonstrated the need for a preventive approach based on the application of Hazard Analysis Critical Control Point in the food industry to ensure food safety of infant flours in Burkina Faso.

Dracaena cochinchinensis Lour. is an ethnomedicinally important plant used in traditional Chinese medicine known as dragon’s blood. Excessive utilization of the plant for extraction of dragon’s blood had resulted in the destruction of the important niche. During a study to provide a sustainable way of utilizing the resources, the endophytic Actinobacteria associated with the plant were explored for potential utilization of their medicinal properties. Three hundred and four endophytic Actinobacteria belonging to the genera Streptomyces, Nocardiopsis, Brevibacterium, Microbacterium, Tsukamurella, Arthrobacter, Brachybacterium, Nocardia, Rhodococcus, Kocuria, Nocardioides, and Pseudonocardia were isolated from different tissues of D. cochinchinensis Lour. Of these, 17 strains having antimicrobial and anthracyclines-producing activities were further selected for screening of antifungal and cytotoxic activities against two human cancer cell lines, MCF-7 and Hep G2. Ten of these selected endophytic Actinobacteria showed antifungal activities against at least one of the fungal pathogens, of which three strains exhibited cytotoxic activities with IC50-values ranging between 3 and 33 μg·mL−1. Frequencies for the presence of biosynthetic genes, polyketide synthase- (PKS-) I, PKS-II, and nonribosomal peptide synthetase (NRPS) among these 17 selected bioactive Actinobacteria were 29.4%, 70.6%, and 23.5%, respectively. The results indicated that the medicinal plant D. cochinchinensis Lour. is a good niche of biologically important metabolites-producing Actinobacteria.

Cocoa beans are the principal raw material for chocolate manufacture. Moulds have an important place in the change in the quality of cocoa beans due to their role in the production of free fatty acids and mycotoxins, namely ochratoxin A (OTA). This study investigated the impact of the key post-harvest treatments, namely the fermentation and drying methods on OTA contamination of raw cocoa beans. Analytical methods for OTA detection were based on solid-liquid extraction, clean-up using an immunoaffinity column, and identification by reversed-phase HPLC with fluorescence detection. Of a total of 104 randomly selected cocoa samples analysed, 32% had OTA contents above 2 µg kg(-1). Cocoa sourced from pods in a bad state of health had a maximum OTA content of 39.2 µg kg(-1), while that obtained from healthy pods recorded 11.2 µg kg(-1). The production of OTA in cocoa beans increased according to the pod-opening delay and reached 39.2 µg kg(-1) after an opening delay of 7 days after harvest, while 6.1 and 11.2 µg kg(-1) were observed when pods were opened after 0 and 4 days. OTA production also seemed to depend considerably to the cocoa fermentation materials. When using plastic boxes for bean fermentation, the OTA production was enhanced and reached an average OTA content of about 4.9 µg kg(-1), while the raw cocoa treated in banana leaves and wooden boxes recorded 1.6 and 2.2 µg kg(-1) on average respectively. In parallel, the OTA production was not really influenced by either the mixing or the duration of the fermentation or the drying materials.

Mycotoxins are toxic secondary metabolites secreted by filamentous fungi, mainly belonging to the genera Aspergillus, Fusarium and Penicillium, in food productions of plant origin. Contamination by mycotoxins causes significant economic losses. These molecules are also resistant to processing treatments such as cooking or roasting and can therefore be found in the entire food chain. About thirty of them are recognized for their harmful effects on human and animal health. The use of fungicides is currently the most used means to fight against the mycotoxic risk. However, in a context of sustainable development, alternatives based on biocontrol are to be developed. The objective of this work was to study a biological control method that could reduce the contamination by mycotoxins considered to be of concern and produced by certain fungal strains, Aspergillus flavus, Aspergillus carbonarius and Fusarium verticillioides, which produce aflatoxin B1, ochratoxin A and fumonisin B1 respectively. Plant extracts have long been known as antifungal agents and the first strategy was to use a commercial biological control product, Antoferine®, which is a natural vine extract containing polyphenols, produced by the company Antofenol (Plestan, France). This product has already been tested for its antifungal activity but this is the first study devoted to its impact on mycotoxins. The second strategy was to test three essential oils extracted from Cymbopogon schoenanthus, Cymbopogon nardus and Eucalyptus camaldulensis. Antoferine® showed a dose-dependent activity on fungal growth and toxin production, and to a lesser extent on spore production, of A. flavus and F. verticillioides. Its effect on the growth of A. carbonarius was more contrasted since growth was only slightly impacted and toxin production was stimulated. Antoferine® also showed a potential detoxification of aflatoxin B1 produced by A. flavus. Concerning the three essential oils, inhibitory effects were demonstrated on the growth and mycotoxin production of A. flavus, A. carbonarius and F. verticillioides using a direct contact method and a disk diffusion method. In general, the essential oils of Cymbopogon schoenanthus and Cymbopogon nardus showed higher activity than Eucalyptus camaldulensis essential oil but it is interesting to note that E. camaldulensis was able to inhibit mycotoxin production with no or lesser effect on fungal growth.; Les mycotoxines sont des métabolites secondaires toxiques sécrétés par des champignons filamenteux, appartenant essentiellement aux genres Aspergillus, Fusarium et Penicillium, dans les productions alimentaires d’origine végétale. La contamination par les mycotoxines entraîne des pertes économiques importantes. Ces molécules sont en outre résistantes aux traitements de transformation comme la cuisson ou la torréfaction et elles peuvent donc se retrouver dans toute la chaîne alimentaire. Une trentaine d’entre elles sont reconnues pour leurs effets néfastes pour la santé humaine et animale. L’utilisation de fongicides est actuellement le moyen le plus utilisé pour lutter contre le risque mycotoxique. Toutefois, dans un contexte de développement durable, des alternatives basées sur le biocontrôle sont à développer. Le travail réalisé a donc eu pour objectif d’étudier un moyen de lutte biologique pouvant réduire la contamination par des mycotoxines considérées comme préoccupantes et produites par certaines souches fongiques, Aspergillus flavus, Aspergillus carbonarius et Fusarium verticillioides, respectivement productrices d’aflatoxine B1, ochratoxine A et fumonisine B1. Les extraits de plantes sont connus depuis longtemps comme agents antifongiques et la première stratégie a été d’utiliser un produit commercial de lutte biologique, l’Antoferine®, qui est un extrait naturel de vigne contenant des polyphénols, produit par la société Antofénol (Plestan, France). Ce produit a déjà été testé pour son activité antifongique mais c'est la première étude consacrée à son impact sur les mycotoxines. La seconde stratégie a été de tester trois huiles essentielles extraites de Cymbopogon schoenanthus, Cymbopogon nardus et Eucalyptus camaldulensis. L’Antoferine® a montré une activité dose-dépendante sur la croissance fongique et la production de toxines, et dans une moindre mesure sur la production de spores, d'A. flavus et F. verticillioides. Son effet sur la croissance d'A. carbonarius a été plus contrasté puisque la croissance n'était que faiblement impactée et la production de toxines stimulée. L’Antoferine® a également montré un potentiel de détoxification de l'aflatoxine B1 produite par A. flavus. Concernant les trois huiles essentielles, des effets inhibiteurs ont été mis en évidence sur la croissance et la production de mycotoxines d'A. flavus, A. carbonarius et F. verticillioides en utilisant une méthode de contact direct et une méthode de diffusion sur disque. D’une manière générale, les huiles essentielles de Cymbopogon schoenanthus et Cymbopogon nardus ont montré une activité supérieure à celle de l’huile essentielle d’Eucalyptus camaldulensis mais il est intéressant de noter que E. camaldulensis a été capable d'inhiber la production de mycotoxines sans effet significatif ou moindre sur le développement fongique.