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5. Dominance and rarity in tree communities across the globe: Patterns, predictors and threats

Author

Hordijk, Iris, Bialic‐Murphy, Lalasia, Lauber, Thomas, Routh, Devin, Poorter, Lourens, Rivers, Malin C, Steege, Hans ter, Liang, Jingjing, Reich, Peter B, de‐Miguel, Sergio, Nabuurs, Gert‐Jan, Gamarra, Javier GP, Chen, Han YH, Zhou, Mo, Wiser, Susan K, Pretzsch, Hans, Paquette, Alain, Picard, Nicolas, Hérault, Bruno, Bastin, Jean‐Francois, Alberti, Giorgio, Abegg, Meinrad, Yao, Yves C Adou, Zambrano, Angelica M Almeyda, Alvarado, Braulio V, Alvarez‐Davila, Esteban, Alvarez‐Loayza, Patricia, Alves, Luciana F, Ammer, Christian, Antón‐Fernández, Clara, Araujo‐Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Corredor, Gerardo A Aymard, Baker, Timothy, Banki, Olaf, Barroso, Jorcely, Bastian, Meredith L, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Gatti, Roberto Cazzolla, Cesar, Ricardo G, Cesljar, Goran, Chazdon, Robin, Chisholm, Chelsea, Cienciala, Emil, Clark, Connie J, Clar, David B, Colletta, Gabriel, Coomes, David, Valverde, Fernando Cornejo, Corral‐Rivas, Jose J, Crim, Philip, Cumming, Jonathan, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Iêda, Amaral, Dourdain, Aurélie, Dolezal, Jiri, Obiang, Nestor Laurier Engone, Enquist, Brian, Eyre, Teresa, Fandohan, Adandé Belarmain, Fayle, Tom M, Ferreira, Leandro V, Feldpausch, Ted R, Finér, Leena, Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gianelle, Damiano, Glick, Henry B, Harris, David, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Herbohn, John, Hillers, Annika, Coronado, Eurídice N Honorio, Hui, Cang, Cho, Hyunkook, Ibanez, Thomas, Jung, Ilbin, Imai, Nobuo, Jagodzinski, Andrzej M, and Jaroszewicz, Bogdan

Subjects
Environmental Sciences, Ecological Applications, Ecology, Biological Sciences, Machine Learning and Artificial Intelligence, Life on Land, Life Below Water
Abstract

Aim: Ecological and anthropogenic factors shift the abundances of dominant and rare tree species within local forest communities, thus affecting species composition and ecosystem functioning. To inform forest and conservation management it is important to understand the drivers of dominance and rarity in local tree communities. We answer the following research questions: (1) What are the patterns of dominance and rarity in tree communities? (2) Which ecological and anthropogenic factors predict these patterns? And (3) what is the extinction risk of locally dominant and rare tree species?. Location: Global. Time period: 1990–2017. Major taxa studied: Trees. Methods: We used 1.2 million forest plots and quantified local tree dominance as the relative plot basal area of the single most dominant species and local rarity as the percentage of species that contribute together to the least 10% of plot basal area. We mapped global community dominance and rarity using machine learning models and evaluated the ecological and anthropogenic predictors with linear models. Extinction risk, for example threatened status, of geographically widespread dominant and rare species was evaluated. Results: Community dominance and rarity show contrasting latitudinal trends, with boreal forests having high levels of dominance and tropical forests having high levels of rarity. Increasing annual precipitation reduces community dominance, probably because precipitation is related to an increase in tree density and richness. Additionally, stand age is positively related to community dominance, due to stem diameter increase of the most dominant species. Surprisingly, we find that locally dominant and rare species, which are geographically widespread in our data, have an equally high rate of elevated extinction due to declining populations through large-scale land degradation. Main conclusions: By linking patterns and predictors of community dominance and rarity to extinction risk, our results suggest that also widespread species should be considered in large-scale management and conservation practices.

Published
2024

6. Integrated global assessment of the natural forest carbon potential

Author

Mo, Lidong, Zohner, Constantin M, Reich, Peter B, Liang, Jingjing, de Miguel, Sergio, Nabuurs, Gert-Jan, Renner, Susanne S, van den Hoogen, Johan, Araza, Arnan, Herold, Martin, Mirzagholi, Leila, Ma, Haozhi, Averill, Colin, Phillips, Oliver L, Gamarra, Javier GP, Hordijk, Iris, Routh, Devin, Abegg, Meinrad, Adou Yao, Yves C, Alberti, Giorgio, Almeyda Zambrano, Angelica M, Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F, Amaral, Iêda, Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A, Baker, Timothy R, Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G, Bastian, Meredith L, Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brearley, Francis Q, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Cazzolla Gatti, Roberto, César, Ricardo G, Cesljar, Goran, Chazdon, Robin L, Chen, Han YH, Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D, Coomes, David A, Cornejo Valverde, Fernando, Corral-Rivas, José J, Crim, Philip M, Cumming, Jonathan R, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J, Eyre, Teresa J, Fandohan, Adandé Belarmain, Fayle, Tom M, Feldpausch, Ted R, Ferreira, Leandro V, Finér, Leena, Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gianelle, Damiano, Glick, Henry B, Harris, David J, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L, Hillers, Annika, Honorio Coronado, Eurídice N, Hui, Cang, Ibanez, Thomas, Imai, Nobuo, and Jagodziński, Andrzej M

Subjects
Agricultural, Veterinary and Food Sciences, Ecological Applications, Environmental Sciences, Forestry Sciences, Life on Land, Biodiversity, Carbon, Carbon Sequestration, Conservation of Natural Resources, Forests, Human Activities, Environmental Restoration and Remediation, Sustainable Development, Global Warming, Agricultural, Ecosystem, General Science & Technology, Humans, Veterinary and Food Sciences
Abstract

Forests are a substantial terrestrial carbon sink, but anthropogenic changes in land use and climate have considerably reduced the scale of this system1. Remote-sensing estimates to quantify carbon losses from global forests2-5 are characterized by considerable uncertainty and we lack a comprehensive ground-sourced evaluation to benchmark these estimates. Here we combine several ground-sourced6 and satellite-derived approaches2,7,8 to evaluate the scale of the global forest carbon potential outside agricultural and urban lands. Despite regional variation, the predictions demonstrated remarkable consistency at a global scale, with only a 12% difference between the ground-sourced and satellite-derived estimates. At present, global forest carbon storage is markedly under the natural potential, with a total deficit of 226 Gt (model range = 151-363 Gt) in areas with low human footprint. Most (61%, 139 Gt C) of this potential is in areas with existing forests, in which ecosystem protection can allow forests to recover to maturity. The remaining 39% (87 Gt C) of potential lies in regions in which forests have been removed or fragmented. Although forests cannot be a substitute for emissions reductions, our results support the idea2,3,9 that the conservation, restoration and sustainable management of diverse forests offer valuable contributions to meeting global climate and biodiversity targets.

Published
2023

7. The global biogeography of tree leaf form and habit

Author

Ma, Haozhi, Crowther, Thomas W, Mo, Lidong, Maynard, Daniel S, Renner, Susanne S, van den Hoogen, Johan, Zou, Yibiao, Liang, Jingjing, de-Miguel, Sergio, Nabuurs, Gert-Jan, Reich, Peter B, Niinemets, Ülo, Abegg, Meinrad, Adou Yao, Yves C, Alberti, Giorgio, Almeyda Zambrano, Angelica M, Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F, Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A, Baker, Timothy R, Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G, Bastian, Meredith L, Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brearley, Francis Q, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Cazzolla Gatti, Roberto, César, Ricardo G, Cesljar, Goran, Chazdon, Robin, Chen, Han YH, Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D, Coomes, David A, Valverde, Fernando Cornejo, Corral-Rivas, José J, Crim, Philip M, Cumming, Jonathan R, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J, Eyre, Teresa J, Fandohan, Adandé Belarmain, Fayle, Tom M, Feldpausch, Ted R, Ferreira, Leandro V, Finér, Leena, Fischer, Markus, Fletcher, Christine, Fridman, Jonas, Frizzera, Lorenzo, Gamarra, Javier GP, Gianelle, Damiano, Glick, Henry B, Harris, David J, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L, Herold, Martin, Hillers, Annika, Honorio Coronado, Eurídice N, Hui, Cang, Ibanez, Thomas T, Amaral, Iêda, Imai, Nobuo, Jagodziński, Andrzej M, Jaroszewicz, Bogdan, and Johannsen, Vivian Kvist

Subjects
Biological Sciences, Ecology, Climate Action, Plant Biology, Crop and Pasture Production, Plant biology
Abstract

Understanding what controls global leaf type variation in trees is crucial for comprehending their role in terrestrial ecosystems, including carbon, water and nutrient dynamics. Yet our understanding of the factors influencing forest leaf types remains incomplete, leaving us uncertain about the global proportions of needle-leaved, broadleaved, evergreen and deciduous trees. To address these gaps, we conducted a global, ground-sourced assessment of forest leaf-type variation by integrating forest inventory data with comprehensive leaf form (broadleaf vs needle-leaf) and habit (evergreen vs deciduous) records. We found that global variation in leaf habit is primarily driven by isothermality and soil characteristics, while leaf form is predominantly driven by temperature. Given these relationships, we estimate that 38% of global tree individuals are needle-leaved evergreen, 29% are broadleaved evergreen, 27% are broadleaved deciduous and 5% are needle-leaved deciduous. The aboveground biomass distribution among these tree types is approximately 21% (126.4 Gt), 54% (335.7 Gt), 22% (136.2 Gt) and 3% (18.7 Gt), respectively. We further project that, depending on future emissions pathways, 17-34% of forested areas will experience climate conditions by the end of the century that currently support a different forest type, highlighting the intensification of climatic stress on existing forests. By quantifying the distribution of tree leaf types and their corresponding biomass, and identifying regions where climate change will exert greatest pressure on current leaf types, our results can help improve predictions of future terrestrial ecosystem functioning and carbon cycling.

Published
2023

8. Author Correction: Native diversity buffers against severity of non-native tree invasions

Author

Delavaux, Camille S, Crowther, Thomas W, Zohner, Constantin M, Robmann, Niamh M, Lauber, Thomas, van den Hoogen, Johan, Kuebbing, Sara, Liang, Jingjing, de-Miguel, Sergio, Nabuurs, Gert-Jan, Reich, Peter B, Abegg, Meinrad, Adou Yao, Yves C, Alberti, Giorgio, Almeyda Zambrano, Angelica M, Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F, Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A, Baker, Timothy R, Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G, Bastian, Meredith L, Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Gatti, Roberto Cazzolla, César, Ricardo G, Cesljar, Goran, Chazdon, Robin, Chen, Han YH, Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D, Coomes, David A, Cornejo Valverde, Fernando, Corral-Rivas, José J, Crim, Philip M, Cumming, Jonathan R, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J, Eyre, Teresa J, Fandohan, Adandé Belarmain, Fayle, Tom M, Feldpausch, Ted R, Ferreira, Leandro V, Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gamarra, Javier GP, Gianelle, Damiano, Glick, Henry B, Harris, David J, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L, Herold, Martin, Hillers, Annika, Honorio Coronado, Eurídice N, Hui, Cang, Ibanez, Thomas T, Amaral, Iêda, Imai, Nobuo, Jagodziński, Andrzej M, Jaroszewicz, Bogdan, Johannsen, Vivian Kvist, Joly, Carlos A, Jucker, Tommaso, Jung, Ilbin, and Karminov, Viktor

Subjects
General Science & Technology
Published
2023

9. Sensitivity of South American tropical forests to an extreme climate anomaly

Author

Bennett, Amy C, Rodrigues de Sousa, Thaiane, Monteagudo-Mendoza, Abel, Esquivel-Muelbert, Adriane, Morandi, Paulo S, Coelho de Souza, Fernanda, Castro, Wendeson, Duque, Luisa Fernanda, Flores Llampazo, Gerardo, Manoel dos Santos, Rubens, Ramos, Eliana, Vilanova Torre, Emilio, Alvarez-Davila, Esteban, Baker, Timothy R, Costa, Flávia RC, Lewis, Simon L, Marimon, Beatriz S, Schietti, Juliana, Burban, Benoît, Berenguer, Erika, Araujo-Murakami, Alejandro, Restrepo Correa, Zorayda, Lopez, Wilmar, Delgado Santana, Flávia, Viscarra, Laura Jessica, Elias, Fernando, Vasquez Martinez, Rodolfo, Marimon-Junior, Ben Hur, Galbraith, David, Sullivan, Martin JP, Emilio, Thaise, Prestes, Nayane CCS, Barlow, Jos, Alencar Fagundes, Nathalle Cristine, Almeida de Oliveira, Edmar, Alvarez Loayza, Patricia, Alves, Luciana F, Aparecida Vieira, Simone, Andrade Maia, Vinícius, Aragão, Luiz EOC, Arets, Eric JMM, Arroyo, Luzmila, Bánki, Olaf, Baraloto, Christopher, Barbosa Camargo, Plínio, Barroso, Jorcely, Bento da Silva, Wilder, Bonal, Damien, Borges Miranda Santos, Alisson, Brienen, Roel JW, Brown, Foster, Castilho, Carolina V, Cerruto Ribeiro, Sabina, Chama Moscoso, Victor, Chavez, Ezequiel, Comiskey, James A, Cornejo Valverde, Fernando, Dávila Cardozo, Nállarett, de Aguiar-Campos, Natália, de Oliveira Melo, Lia, del Aguila Pasquel, Jhon, Derroire, Géraldine, Disney, Mathias, do Socorro, Maria, Dourdain, Aurélie, Feldpausch, Ted R, Ferreira, Joice, Forni Martins, Valeria, Gardner, Toby, Gloor, Emanuel, Gutierrez Sibauty, Gloria, Guillen, René, Hase, Eduardo, Hérault, Bruno, Honorio Coronado, Eurídice N, Huaraca Huasco, Walter, Janovec, John P, Jimenez-Rojas, Eliana, Joly, Carlos, Kalamandeen, Michelle, Killeen, Timothy J, Lais Farrapo, Camila, Levesley, Aurora, Lizon Romano, Leon, Lopez Gonzalez, Gabriela, Maës dos Santos, Flavio Antonio, Magnusson, William E, Malhi, Yadvinder, Matias de Almeida Reis, Simone, Melgaço, Karina, Melo Cruz, Omar A, Mendoza Polo, Irina, Montañez, Tatiana, Morel, Jean Daniel, Núñez Vargas, M Percy, Oliveira de Araújo, Raimunda, Pallqui Camacho, Nadir C, Parada Gutierrez, Alexander, Pennington, Toby, and Pickavance, Georgia C

Subjects
Agricultural, Veterinary and Food Sciences, Climate Change Impacts and Adaptation, Biological Sciences, Ecology, Environmental Sciences, Forestry Sciences, Climate Action, Life on Land, Atmospheric Sciences, Physical Geography and Environmental Geoscience, Environmental Science and Management
Abstract

Abstract: The tropical forest carbon sink is known to be drought sensitive, but it is unclear which forests are the most vulnerable to extreme events. Forests with hotter and drier baseline conditions may be protected by prior adaptation, or more vulnerable because they operate closer to physiological limits. Here we report that forests in drier South American climates experienced the greatest impacts of the 2015–2016 El Niño, indicating greater vulnerability to extreme temperatures and drought. The long-term, ground-measured tree-by-tree responses of 123 forest plots across tropical South America show that the biomass carbon sink ceased during the event with carbon balance becoming indistinguishable from zero (−0.02 ± 0.37 Mg C ha−1 per year). However, intact tropical South American forests overall were no more sensitive to the extreme 2015–2016 El Niño than to previous less intense events, remaining a key defence against climate change as long as they are protected.

Published
2023

10. Native diversity buffers against severity of non-native tree invasions.

Author

Delavaux, Camille S, Crowther, Thomas W, Zohner, Constantin M, Robmann, Niamh M, Lauber, Thomas, van den Hoogen, Johan, Kuebbing, Sara, Liang, Jingjing, de-Miguel, Sergio, Nabuurs, Gert-Jan, Reich, Peter B, Abegg, Meinrad, Adou Yao, Yves C, Alberti, Giorgio, Almeyda Zambrano, Angelica M, Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F, Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A, Baker, Timothy R, Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G, Bastian, Meredith L, Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Gatti, Roberto Cazzolla, César, Ricardo G, Cesljar, Goran, Chazdon, Robin, Chen, Han YH, Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D, Coomes, David A, Cornejo Valverde, Fernando, Corral-Rivas, José J, Crim, Philip M, Cumming, Jonathan R, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J, Eyre, Teresa J, Fandohan, Adandé Belarmain, Fayle, Tom M, Feldpausch, Ted R, Ferreira, Leandro V, Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gamarra, Javier GP, Gianelle, Damiano, Glick, Henry B, Harris, David J, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L, Herold, Martin, Hillers, Annika, Honorio Coronado, Eurídice N, Hui, Cang, Ibanez, Thomas T, Amaral, Iêda, Imai, Nobuo, Jagodziński, Andrzej M, Jaroszewicz, Bogdan, Johannsen, Vivian Kvist, Joly, Carlos A, Jucker, Tommaso, Jung, Ilbin, and Karminov, Viktor

Subjects
General Science & Technology
Abstract

Determining the drivers of non-native plant invasions is critical for managing native ecosystems and limiting the spread of invasive species1,2. Tree invasions in particular have been relatively overlooked, even though they have the potential to transform ecosystems and economies3,4. Here, leveraging global tree databases5-7, we explore how the phylogenetic and functional diversity of native tree communities, human pressure and the environment influence the establishment of non-native tree species and the subsequent invasion severity. We find that anthropogenic factors are key to predicting whether a location is invaded, but that invasion severity is underpinned by native diversity, with higher diversity predicting lower invasion severity. Temperature and precipitation emerge as strong predictors of invasion strategy, with non-native species invading successfully when they are similar to the native community in cold or dry extremes. Yet, despite the influence of these ecological forces in determining invasion strategy, we find evidence that these patterns can be obscured by human activity, with lower ecological signal in areas with higher proximity to shipping ports. Our global perspective of non-native tree invasion highlights that human drivers influence non-native tree presence, and that native phylogenetic and functional diversity have a critical role in the establishment and spread of subsequent invasions.

Published
2023

11. Consistent patterns of common species across tropical tree communities

Author

Cooper, Declan L. M., Lewis, Simon L., Sullivan, Martin J. P., Prado, Paulo I., ter Steege, Hans, Barbier, Nicolas, Slik, Ferry, Sonké, Bonaventure, Ewango, Corneille E. N., Adu-Bredu, Stephen, Affum-Baffoe, Kofi, de Aguiar, Daniel P. P., Ahuite Reategui, Manuel Augusto, Aiba, Shin-Ichiro, Albuquerque, Bianca Weiss, de Almeida Matos, Francisca Dionízia, Alonso, Alfonso, Amani, Christian A., do Amaral, Dário Dantas, do Amaral, Iêda Leão, Andrade, Ana, de Andrade Miranda, Ires Paula, Angoboy, Ilondea B., Araujo-Murakami, Alejandro, Arboleda, Nicolás Castaño, Arroyo, Luzmila, Ashton, Peter, Aymard C, Gerardo A., Baider, Cláudia, Baker, Timothy R., Balinga, Michael Philippe Bessike, Balslev, Henrik, Banin, Lindsay F., Bánki, Olaf S., Baraloto, Chris, Barbosa, Edelcilio Marques, Barbosa, Flávia Rodrigues, Barlow, Jos, Bastin, Jean-Francois, Beeckman, Hans, Begne, Serge, Bengone, Natacha Nssi, Berenguer, Erika, Berry, Nicholas, Bitariho, Robert, Boeckx, Pascal, Bogaert, Jan, Bonyoma, Bernard, Boundja, Patrick, Bourland, Nils, Boyemba Bosela, Faustin, Brambach, Fabian, Brienen, Roel, Burslem, David F. R. P., Camargo, José Luís, Campelo, Wegliane, Cano, Angela, Cárdenas, Sasha, Cárdenas López, Dairon, de Sá Carpanedo, Rainiellen, Carrero Márquez, Yrma Andreina, Carvalho, Fernanda Antunes, Casas, Luisa Fernanda, Castellanos, Hernán, Castilho, Carolina V., Cerón, Carlos, Chapman, Colin A., Chave, Jerome, Chhang, Phourin, Chutipong, Wanlop, Chuyong, George B., Cintra, Bruno Barçante Ladvocat, Clark, Connie J., Coelho de Souza, Fernanda, Comiskey, James A., Coomes, David A., Cornejo Valverde, Fernando, Correa, Diego F., Costa, Flávia R. C., Costa, Janaina Barbosa Pedrosa, Couteron, Pierre, Culmsee, Heike, Cuni-Sanchez, Aida, Dallmeier, Francisco, Damasco, Gabriel, Dauby, Gilles, Dávila, Nállarett, Dávila Doza, Hilda Paulette, De Alban, Jose Don T., de Assis, Rafael L., De Canniere, Charles, De Haulleville, Thales, de Jesus Veiga Carim, Marcelo, Demarchi, Layon O., Dexter, Kyle G., Di Fiore, Anthony, Din, Hazimah Haji Mohammad, Disney, Mathias I., Djiofack, Brice Yannick, Djuikouo, Marie-Noël K., Do, Tran Van, Doucet, Jean-Louis, Draper, Freddie C., Droissart, Vincent, Duivenvoorden, Joost F., Engel, Julien, Estienne, Vittoria, Farfan-Rios, William, Fauset, Sophie, Feeley, Kenneth J., Feitosa, Yuri Oliveira, Feldpausch, Ted R., Ferreira, Cid, Ferreira, Joice, Ferreira, Leandro Valle, Fletcher, Christine D., Flores, Bernardo Monteiro, Fofanah, Alusine, Foli, Ernest G., Fonty, Émile, Fredriksson, Gabriella M., Fuentes, Alfredo, Galbraith, David, Gallardo Gonzales, George Pepe, Garcia-Cabrera, Karina, García-Villacorta, Roosevelt, Gomes, Vitor H. F., Gómez, Ricardo Zárate, Gonzales, Therany, Gribel, Rogerio, Guedes, Marcelino Carneiro, Guevara, Juan Ernesto, Hakeem, Khalid Rehman, Hall, Jefferson S., Hamer, Keith C., Hamilton, Alan C., Harris, David J., Harrison, Rhett D., Hart, Terese B., Hector, Andy, Henkel, Terry W., Herbohn, John, Hockemba, Mireille B. N., Hoffman, Bruce, Holmgren, Milena, Honorio Coronado, Euridice N., Huamantupa-Chuquimaco, Isau, Hubau, Wannes, Imai, Nobuo, Irume, Mariana Victória, Jansen, Patrick A., Jeffery, Kathryn J., Jimenez, Eliana M., Jucker, Tommaso, Junqueira, André Braga, Kalamandeen, Michelle, Kamdem, Narcisse G., Kartawinata, Kuswata, Kasongo Yakusu, Emmanuel, Katembo, John M., Kearsley, Elizabeth, Kenfack, David, Kessler, Michael, Khaing, Thiri Toe, Killeen, Timothy J., Kitayama, Kanehiro, Klitgaard, Bente, Labrière, Nicolas, Laumonier, Yves, Laurance, Susan G. W., Laurance, William F., Laurent, Félix, Le, Tinh Cong, Le, Trai Trong, Leal, Miguel E., Leão de Moraes Novo, Evlyn Márcia, Levesley, Aurora, Libalah, Moses B., Licona, Juan Carlos, Lima Filho, Diógenes de Andrade, Lindsell, Jeremy A., Lopes, Aline, Lopes, Maria Aparecida, Lovett, Jon C., Lowe, Richard, Lozada, José Rafael, Lu, Xinghui, Luambua, Nestor K., Luize, Bruno Garcia, Maas, Paul, Magalhães, José Leonardo Lima, Magnusson, William E., Mahayani, Ni Putu Diana, Makana, Jean-Remy, Malhi, Yadvinder, Maniguaje Rincón, Lorena, Mansor, Asyraf, Manzatto, Angelo Gilberto, Marimon, Beatriz S., Marimon-Junior, Ben Hur, Marshall, Andrew R, Martins, Maria Pires, Mbayu, Faustin M., de Medeiros, Marcelo Brilhante, Mesones, Italo, Metali, Faizah, Mihindou, Vianet, Millet, Jerome, Milliken, William, Mogollón, Hugo F., Molino, Jean-François, Mohd. Said, Mohd. Nizam, Monteagudo Mendoza, Abel, Montero, Juan Carlos, Moore, Sam, Mostacedo, Bonifacio, Mozombite Pinto, Linder Felipe, Mukul, Sharif Ahmed, Munishi, Pantaleo K. T., Nagamasu, Hidetoshi, Nascimento, Henrique Eduardo Mendonça, Nascimento, Marcelo Trindade, Neill, David, Nilus, Reuben, Noronha, Janaína Costa, Nsenga, Laurent, Núñez Vargas, Percy, Ojo, Lucas, Oliveira, Alexandre A., de Oliveira, Edmar Almeida, Ondo, Fidèle Evouna, Palacios Cuenca, Walter, Pansini, Susamar, Pansonato, Marcelo Petratti, Paredes, Marcos Ríos, Paudel, Ekananda, Pauletto, Daniela, Pearson, Richard G., Pena, José Luis Marcelo, Pennington, R. Toby, Peres, Carlos A., Permana, Andrea, Petronelli, Pascal, Peñuela Mora, Maria Cristina, Phillips, Juan Fernando, Phillips, Oliver L., Pickavance, Georgia, Piedade, Maria Teresa Fernandez, Pitman, Nigel C. A., Ploton, Pierre, Popelier, Andreas, Poulsen, John R., Prieto, Adriana, Primack, Richard B., Priyadi, Hari, Qie, Lan, Quaresma, Adriano Costa, de Queiroz, Helder Lima, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Reis, Neidiane Farias Costa, Reitsma, Jan, Revilla, Juan David Cardenas, Riutta, Terhi, Rivas-Torres, Gonzalo, Robiansyah, Iyan, Rocha, Maira, Rodrigues, Domingos de Jesus, Rodriguez-Ronderos, M. Elizabeth, Rovero, Francesco, Rozak, Andes H., Rudas, Agustín, Rutishauser, Ervan, Sabatier, Daniel, Sagang, Le Bienfaiteur, Sampaio, Adeilza Felipe, Samsoedin, Ismayadi, Satdichanh, Manichanh, Schietti, Juliana, Schöngart, Jochen, Scudeller, Veridiana Vizoni, Seuaturien, Naret, Sheil, Douglas, Sierra, Rodrigo, Silman, Miles R., Silva, Thiago Sanna Freire, da Silva Guimarães, José Renan, Simo-Droissart, Murielle, Simon, Marcelo Fragomeni, Sist, Plinio, Sousa, Thaiane R., de Sousa Farias, Emanuelle, de Souza Coelho, Luiz, Spracklen, Dominick V., Stas, Suzanne M., Steinmetz, Robert, Stevenson, Pablo R., Stropp, Juliana, Sukri, Rahayu S., Sunderland, Terry C. H., Suzuki, Eizi, Swaine, Michael D., Tang, Jianwei, Taplin, James, Taylor, David M., Tello, J. Sebastián, Terborgh, John, Texier, Nicolas, Theilade, Ida, Thomas, Duncan W., Thomas, Raquel, Thomas, Sean C., Tirado, Milton, Toirambe, Benjamin, de Toledo, José Julio, Tomlinson, Kyle W., Torres-Lezama, Armando, Tran, Hieu Dang, Tshibamba Mukendi, John, Tumaneng, Roven D., Umaña, Maria Natalia, Umunay, Peter M., Urrego Giraldo, Ligia Estela, Valderrama Sandoval, Elvis H., Valenzuela Gamarra, Luis, Van Andel, Tinde R., van de Bult, Martin, van de Pol, Jaqueline, van der Heijden, Geertje, Vasquez, Rodolfo, Vela, César I. A., Venticinque, Eduardo Martins, Verbeeck, Hans, Veridiano, Rizza Karen A., Vicentini, Alberto, Vieira, Ima Célia Guimarães, Vilanova Torre, Emilio, Villarroel, Daniel, Villa Zegarra, Boris Eduardo, Vleminckx, Jason, von Hildebrand, Patricio, Vos, Vincent Antoine, Vriesendorp, Corine, Webb, Edward L., White, Lee J. T., Wich, Serge, Wittmann, Florian, Zagt, Roderick, Zang, Runguo, Zartman, Charles Eugene, Zemagho, Lise, Zent, Egleé L., and Zent, Stanford

Published
2024
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12. Evenness mediates the global relationship between forest productivity and richness

Author

Hordijk, Iris, Maynard, Daniel S, Hart, Simon P, Lidong, Mo, ter Steege, Hans, Liang, Jingjing, de‐Miguel, Sergio, Nabuurs, Gert‐Jan, Reich, Peter B, Abegg, Meinrad, Adou Yao, C Yves, Alberti, Giorgio, Almeyda Zambrano, Angelica M, Alvarado, Braulio V, Esteban, Alvarez‐Davila, Alvarez‐Loayza, Patricia, Alves, Luciana F, Ammer, Christian, Antón‐Fernández, Clara, Araujo‐Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard C, Gerardo A, Baker, Timothy, Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely, Bastian, Meredith L, Bastin, Jean‐Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Cazzolla Gatti, Roberto, César, Ricardo G, Cesljar, Goran, Chazdon, Robin, Chen, Han YH, Chisholm, Chelsea, Cienciala, Emil, Clark, Connie J, Clark, David B, Colletta, Gabriel, Coomes, David, Cornejo Valverde, Fernando, Corral‐Rivas, Jose J, Crim, Philip, Cumming, Jonathan, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Iêda, Amaral, Dourdain, Aurélie, Nestor Laurier, Engone Obiang, Enquist, Brian, Eyre, Teresa, Fandohan, Adandé Belarmain, Fayle, Tom M, Ferreira, Leandro V, Feldpausch, Ted R, Finér, Leena, Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gamarra, Javier GP, Gianelle, Damiano, Glick, Henry B, Harris, David, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John, Hillers, Annika, Honorio Coronado, Eurídice N, Hui, Cang, Cho, Hyunkook, Ibanez, Thomas, Bin Jung, Il, Imai, Nobuo, Jagodzinski, Andrzej M, Jaroszewicz, Bogdan, Johanssen, Vivian, Joly, Carlos A, Jucker, Tommaso, Karminov, Viktor, Kartawinata, Kuswata, Kearsley, Elizabeth, and Kenfack, David

Subjects
Biological Sciences, Ecology, Life Below Water, diversity, ecosystem function and services, evenness, forests, global, productivity, species richness, Environmental Sciences, Agricultural and Veterinary Sciences
Abstract

1. Biodiversity is an important component of natural ecosystems, with higher species richness often correlating with an increase in ecosystem productivity. Yet, this relationship varies substantially across environments, typically becoming less pronounced at high levels of species richness. However, species richness alone cannot reflect all important properties of a community, including community evenness, which may mediate the relationship between biodiversity and productivity. If the evenness of a community correlates negatively with richness across forests globally, then a greater number of species may not always increase overall diversity and productivity of the system. Theoretical work and local empirical studies have shown that the effect of evenness on ecosystem functioning may be especially strong at high richness levels, yet the consistency of this remains untested at a global scale. 2. Here, we used a dataset of forests from across the globe, which includes composition, biomass accumulation and net primary productivity, to explore whether productivity correlates with community evenness and richness in a way that evenness appears to buffer the effect of richness. Specifically, we evaluated whether low levels of evenness in speciose communities correlate with the attenuation of the richness–productivity relationship. 3. We found that tree species richness and evenness are negatively correlated across forests globally, with highly speciose forests typically comprising a few dominant and many rare species. Furthermore, we found that the correlation between diversity and productivity changes with evenness: at low richness, uneven communities are more productive, while at high richness, even communities are more productive. 4. Synthesis. Collectively, these results demonstrate that evenness is an integral component of the relationship between biodiversity and productivity, and that the attenuating effect of richness on forest productivity might be partly explained by low evenness in speciose communities. Productivity generally increases with species richness, until reduced evenness limits the overall increases in community diversity. Our research suggests that evenness is a fundamental component of biodiversity–ecosystem function relationships, and is of critical importance for guiding conservation and sustainable ecosystem management decisions.

Published
2023

13. Smoking Status, Nicotine Medication, Vaccination, and COVID-19 Hospital Outcomes: Findings from the COVID EHR Cohort at the University of Wisconsin (CEC-UW) Study

Author

Piasecki, Thomas M, Smith, Stevens S, Baker, Timothy B, Slutske, Wendy S, Adsit, Robert T, Bolt, Daniel M, Conner, Karen L, Bernstein, Steven L, Eng, Oliver D, Lazuk, David, Gonzalez, Alec, Jorenby, Douglas E, D’Angelo, Heather, Kirsch, Julie A, Williams, Brian S, Nolan, Margaret B, Hayes-Birchler, Todd, Kent, Sean, Kim, Hanna, Lubanski, Stan, Yu, Menggang, Suk, Youmi, Cai, Yuxin, Kashyap, Nitu, Mathew, Jomol P, McMahan, Gabriel, Rolland, Betsy, Tindle, Hilary A, Warren, Graham W, An, Lawrence C, Boyd, Andrew D, Brunzell, Darlene H, Carrillo, Victor, Chen, Li-Shiun, Davis, James M, Deshmukh, Vikrant G, Dilip, Deepika, Ellerbeck, Edward F, Goldstein, Adam O, Iturrate, Eduardo, Jose, Thulasee, Khanna, Niharika, King, Andrea, Klass, Elizabeth, Mermelstein, Robin J, Tong, Elisa, Tsoh, Janice Y, Wilson, Karen M, Theobald, Wendy E, and Fiore, Michael C

Subjects
Prevention, Tobacco Smoke and Health, Patient Safety, Clinical Research, Immunization, Tobacco, 6.1 Pharmaceuticals, Evaluation of treatments and therapeutic interventions, Respiratory, Good Health and Well Being, Humans, Nicotine, Smoking Cessation, Cohort Studies, Hospital Mortality, COVID-19 Vaccines, Universities, Wisconsin, COVID-19, SARS-CoV-2, Tobacco Use Cessation Devices, Smoking, Hospitals, Clinical Sciences, Public Health and Health Services, Marketing, Public Health
Abstract

IntroductionAvailable evidence is mixed concerning associations between smoking status and COVID-19 clinical outcomes. Effects of nicotine replacement therapy (NRT) and vaccination status on COVID-19 outcomes in smokers are unknown.MethodsElectronic health record data from 104 590 COVID-19 patients hospitalized February 1, 2020 to September 30, 2021 in 21 U.S. health systems were analyzed to assess associations of smoking status, in-hospital NRT prescription, and vaccination status with in-hospital death and ICU admission.ResultsCurrent (n = 7764) and never smokers (n = 57 454) did not differ on outcomes after adjustment for age, sex, race, ethnicity, insurance, body mass index, and comorbidities. Former (vs never) smokers (n = 33 101) had higher adjusted odds of death (aOR, 1.11; 95% CI, 1.06-1.17) and ICU admission (aOR, 1.07; 95% CI, 1.04-1.11). Among current smokers, NRT prescription was associated with reduced mortality (aOR, 0.64; 95% CI, 0.50-0.82). Vaccination effects were significantly moderated by smoking status; vaccination was more strongly associated with reduced mortality among current (aOR, 0.29; 95% CI, 0.16-0.66) and former smokers (aOR, 0.47; 95% CI, 0.39-0.57) than for never smokers (aOR, 0.67; 95% CI, 0.57, 0.79). Vaccination was associated with reduced ICU admission more strongly among former (aOR, 0.74; 95% CI, 0.66-0.83) than never smokers (aOR, 0.87; 95% CI, 0.79-0.97).ConclusionsFormer but not current smokers hospitalized with COVID-19 are at higher risk for severe outcomes. SARS-CoV-2 vaccination is associated with better hospital outcomes in COVID-19 patients, especially current and former smokers. NRT during COVID-19 hospitalization may reduce mortality for current smokers.ImplicationsPrior findings regarding associations between smoking and severe COVID-19 disease outcomes have been inconsistent. This large cohort study suggests potential beneficial effects of nicotine replacement therapy on COVID-19 outcomes in current smokers and outsized benefits of SARS-CoV-2 vaccination in current and former smokers. Such findings may influence clinical practice and prevention efforts and motivate additional research that explores mechanisms for these effects.

Published
2023

14. Associations of Demographics, Dependence, and Biomarkers With Transitions in Tobacco Product Use in a Cohort of Cigarette Users and Dual Users of Cigarettes and E-cigarettes

Author

Shafie-Khorassani, Fatema, Piper, Megan E, Jorenby, Douglas E, Baker, Timothy B, Benowitz, Neal L, Hayes-Birchler, Todd, Meza, Rafael, and Brouwer, Andrew F

Subjects
Behavioral and Social Science, Drug Abuse (NIDA only), Tobacco, Substance Misuse, Clinical Research, Prevention, Cancer, Tobacco Smoke and Health, Pediatric Research Initiative, 3.1 Primary prevention interventions to modify behaviours or promote wellbeing, Prevention of disease and conditions, and promotion of well-being, Respiratory, Good Health and Well Being, Adult, Humans, Electronic Nicotine Delivery Systems, Tobacco Use Disorder, Tobacco Products, Biomarkers, Demography, Clinical Sciences, Public Health and Health Services, Marketing, Public Health
Abstract

IntroductionIt is uncertain whether e-cigarettes facilitate smoking cessation in the real world. We aimed to understand whether and how transitions among cigarette, e-cigarette, and dual use are associated with sociodemographics, dependence measures, and biomarkers.Aims and methodsWe followed 380 adult daily cigarette users and dual users every 2 months for up to 2 years. We estimated transition rates between noncurrent, cigarette-only, e-cigarette-only, and dual use states using a multistate transition model. We estimated univariable hazard ratios (HR) for demographics, dependence measures for cigarettes and e-cigarettes, biomarkers, spousal or partner behaviors, and other measures.ResultsWe estimated that participants transitioned from cigarette-only to e-cigarette-only through a period of dual use. Dual users ceased smoking (transitioning to e-cigarette-only use) at a greater rate than cigarette-only users did (HR 2.44, 95% CI: 1.49, 4.02). However, of the 60% of dual users estimated to transition to single product use in 1 year, 83% would transition to cigarette-only use and only 17% to e-cigarette-only use. E-cigarette dependence measures were generally associated with reduced e-cigarette cessation rather than enhanced cigarette cessation. E-cigarette users motivated by harm or toxicity reduction or because of restrictions on where or when they could smoke had reduced rates of smoking relapse. Cigarette dependence and spousal smoking were barriers to cigarette cessation for dual users, while using e-cigarettes first in the morning, motivation to quit smoking, and sensory, social, and emotional enjoyment of e-cigarettes (secondary dependence motives) were facilitators of smoking cessation among dual users.ConclusionsTobacco control policy and interventions may be informed by the barriers and facilitators of product transitions.ImplicationsAlthough e-cigarettes have the potential to promote smoking cessation, their real-world impact is uncertain. In this cohort, dual users were more likely to quit smoking than cigarette-only users, but the overall impact was small because most dual users returned to cigarette-only use. Moreover, e-cigarette dependence promoted continued dual use rather than smoking cessation. Yet, high motivation to quit smoking and the sensory, social, and emotional enjoyment of e-cigarettes facilitated smoking cessation in dual users. Better understanding the barriers and facilitators of transitions can help to develop regulations and interventions that lead to more effective use of e-cigarettes for smoking cessation.

Published
2023

15. Relations of Current and Past Cancer with Severe Outcomes among 104,590 Hospitalized COVID-19 Patients: The COVID EHR Cohort at the University of Wisconsin

Author

Nolan, Margaret B, Piasecki, Thomas M, Smith, Stevens S, Baker, Timothy B, Fiore, Michael C, Adsit, Robert T, Bolt, Daniel M, Conner, Karen L, Bernstein, Steven L, Eng, Oliver D, Lazuk, David, Gonzalez, Alec, Hayes-Birchler, Todd, Jorenby, Douglas E, D'Angelo, Heather, Kirsch, Julie A, Williams, Brian S, Kent, Sean, Kim, Hanna, Lubanski, Stanley A, Yu, Menggang, Suk, Youmi, Cai, Yuxin, Kashyap, Nitu, Mathew, Jomol, McMahan, Gabriel, Rolland, Betsy, Tindle, Hilary A, Warren, Graham W, Abu-el-rub, Noor, An, Lawrence C, Boyd, Andrew D, Brunzell, Darlene H, Carrillo, Victor A, Chen, Li-Shiun, Davis, James M, Deshmukh, Vikrant G, Dilip, Deepika, Goldstein, Adam, Ha, Patrick K, Iturrate, Eduardo, Jose, Thulasee, Khanna, Niharika, King, Andrea, Klass, Elizabeth, Lui, Michelle, Mermelstein, Robin J, Poon, Chester, Tong, Elisa, Wilson, Karen M, Theobald, Wendy E, and Slutske, Wendy S

Subjects
Cancer, Clinical Research, Prevention, Patient Safety, Good Health and Well Being, Adult, Humans, COVID-19 Vaccines, Pandemics, Universities, Wisconsin, COVID-19, Neoplasms, Hospitalization, Medical and Health Sciences, Epidemiology
Abstract

BackgroundThere is mixed evidence about the relations of current versus past cancer with severe COVID-19 outcomes and how they vary by patient and cancer characteristics.MethodsElectronic health record data of 104,590 adult hospitalized patients with COVID-19 were obtained from 21 United States health systems from February 2020 through September 2021. In-hospital mortality and ICU admission were predicted from current and past cancer diagnoses. Moderation by patient characteristics, vaccination status, cancer type, and year of the pandemic was examined.Results6.8% of the patients had current (n = 7,141) and 6.5% had past (n = 6,749) cancer diagnoses. Current cancer predicted both severe outcomes but past cancer did not; adjusted odds ratios (aOR) for mortality were 1.58 [95% confidence interval (CI), 1.46-1.70] and 1.04 (95% CI, 0.96-1.13), respectively. Mortality rates decreased over the pandemic but the incremental risk of current cancer persisted, with the increment being larger among younger vs. older patients. Prior COVID-19 vaccination reduced mortality generally and among those with current cancer (aOR, 0.69; 95% CI, 0.53-0.90).ConclusionsCurrent cancer, especially among younger patients, posed a substantially increased risk for death and ICU admission among patients with COVID-19; prior COVID-19 vaccination mitigated the risk associated with current cancer. Past history of cancer was not associated with higher risks for severe COVID-19 outcomes for most cancer types.ImpactThis study clarifies the characteristics that modify the risk associated with cancer on severe COVID-19 outcomes across the first 20 months of the COVID-19 pandemic. See related commentary by Egan et al., p. 3.

Published
2023

16. Data envelopment analysis to evaluate the efficiency of tobacco treatment programs in the NCI Moonshot Cancer Center Cessation Initiative

Author

Pluta, Kathryn, Hohl, Sarah D, D’Angelo, Heather, Ostroff, Jamie S, Shelley, Donna, Asvat, Yasmin, Chen, Li-Shiun, Cummings, K Michael, Dahl, Neely, Day, Andrew T, Fleisher, Linda, Goldstein, Adam O, Hayes, Rashelle, Hitsman, Brian, Buckles, Deborah Hudson, King, Andrea C, Lam, Cho Y, Lenhoff, Katie, Levinson, Arnold H, Minion, Mara, Presant, Cary, Prochaska, Judith J, Shoenbill, Kimberly, Simmons, Vani, Taylor, Kathryn, Tindle, Hilary, Tong, Elisa, White, Justin S, Wiseman, Kara P, Warren, Graham W, Baker, Timothy B, Rolland, Betsy, Fiore, Michael C, and Salloum, Ramzi G

Subjects
Health Services and Systems, Health Sciences, Clinical Research, Cancer, Bioengineering, Comparative Effectiveness Research, Health Services, Dissemination and Implementation Research, Tobacco Smoke and Health, Tobacco, Good Health and Well Being, Data envelopment analysis, Efficiency, Program performance, Implementation costs, Smoking cessation, Implementation science, Tobacco treatment, Health services and systems, Public health
Abstract

BackgroundThe Cancer Center Cessation Initiative (C3I) is a National Cancer Institute (NCI) Cancer Moonshot Program that supports NCI-designated cancer centers developing tobacco treatment programs for oncology patients who smoke. C3I-funded centers implement evidence-based programs that offer various smoking cessation treatment components (e.g., counseling, Quitline referrals, access to medications). While evaluation of implementation outcomes in C3I is guided by evaluation of reach and effectiveness (via RE-AIM), little is known about technical efficiency-i.e., how inputs (e.g., program costs, staff time) influence implementation outcomes (e.g., reach, effectiveness). This study demonstrates the application of data envelopment analysis (DEA) as an implementation science tool to evaluate technical efficiency of C3I programs and advance prioritization of implementation resources.MethodsDEA is a linear programming technique widely used in economics and engineering for assessing relative performance of production units. Using data from 16 C3I-funded centers reported in 2020, we applied input-oriented DEA to model technical efficiency (i.e., proportion of observed outcomes to benchmarked outcomes for given input levels). The primary models used the constant returns-to-scale specification and featured cost-per-participant, total full-time equivalent (FTE) effort, and tobacco treatment specialist effort as model inputs and reach and effectiveness (quit rates) as outcomes.ResultsIn the DEA model featuring cost-per-participant (input) and reach/effectiveness (outcomes), average constant returns-to-scale technical efficiency was 25.66 (SD = 24.56). When stratified by program characteristics, technical efficiency was higher among programs in cohort 1 (M = 29.15, SD = 28.65, n = 11) vs. cohort 2 (M = 17.99, SD = 10.16, n = 5), with point-of-care (M = 33.90, SD = 28.63, n = 9) vs. no point-of-care services (M = 15.59, SD = 14.31, n = 7), larger (M = 33.63, SD = 30.38, n = 8) vs. smaller center size (M = 17.70, SD = 15.00, n = 8), and higher (M = 29.65, SD = 30.99, n = 8) vs. lower smoking prevalence (M = 21.67, SD = 17.21, n = 8).ConclusionMost C3I programs assessed were technically inefficient relative to the most efficient center benchmark and may be improved by optimizing the use of inputs (e.g., cost-per-participant) relative to program outcomes (e.g., reach, effectiveness). This study demonstrates the appropriateness and feasibility of using DEA to evaluate the relative performance of evidence-based programs.

Published
2023

17. Native diversity buffers against severity of non-native tree invasions

Author

Delavaux, Camille S., Crowther, Thomas W., Zohner, Constantin M., Robmann, Niamh M., Lauber, Thomas, van den Hoogen, Johan, Kuebbing, Sara, Liang, Jingjing, de-Miguel, Sergio, Nabuurs, Gert-Jan, Reich, Peter B., Abegg, Meinrad, Adou Yao, Yves C., Alberti, Giorgio, Almeyda Zambrano, Angelica M., Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F., Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A., Baker, Timothy R., Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G., Bastian, Meredith L., Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro H. S., Brandl, Susanne, Brienen, Roel, Broadbent, Eben N., Bruelheide, Helge, Bussotti, Filippo, Gatti, Roberto Cazzolla, César, Ricardo G., Cesljar, Goran, Chazdon, Robin, Chen, Han Y. H., Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D., Coomes, David A., Cornejo Valverde, Fernando, Corral-Rivas, José J., Crim, Philip M., Cumming, Jonathan R., Dayanandan, Selvadurai, de Gasper, André L., Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J., Eyre, Teresa J., Fandohan, Adandé Belarmain, Fayle, Tom M., Feldpausch, Ted R., Ferreira, Leandro V., Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gamarra, Javier G. P., Gianelle, Damiano, Glick, Henry B., Harris, David J., Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L., Herold, Martin, Hillers, Annika, Honorio Coronado, Eurídice N., Hui, Cang, Ibanez, Thomas T., Amaral, Iêda, Imai, Nobuo, Jagodziński, Andrzej M., Jaroszewicz, Bogdan, Johannsen, Vivian Kvist, Joly, Carlos A., Jucker, Tommaso, Jung, Ilbin, Karminov, Viktor, Kartawinata, Kuswata, Kearsley, Elizabeth, Kenfack, David, Kennard, Deborah K., Kepfer-Rojas, Sebastian, Keppel, Gunnar, Khan, Mohammed Latif, Killeen, Timothy J., Kim, Hyun Seok, Kitayama, Kanehiro, Köhl, Michael, Korjus, Henn, Kraxner, Florian, Laarmann, Diana, Lang, Mait, Lewis, Simon L., Lu, Huicui, Lukina, Natalia V., Maitner, Brian S., Malhi, Yadvinder, Marcon, Eric, Marimon, Beatriz Schwantes, Marimon-Junior, Ben Hur, Marshall, Andrew R., Martin, Emanuel H., Martynenko, Olga, Meave, Jorge A., Melo-Cruz, Omar, Mendoza, Casimiro, Merow, Cory, Mendoza, Abel Monteagudo, Moreno, Vanessa S., Mukul, Sharif A., Mundhenk, Philip, Nava-Miranda, María Guadalupe, Neill, David, Neldner, Victor J., Nevenic, Radovan V., Ngugi, Michael R., Niklaus, Pascal A., Oleksyn, Jacek, Ontikov, Petr, Ortiz-Malavasi, Edgar, Pan, Yude, Paquette, Alain, Parada-Gutierrez, Alexander, Parfenova, Elena I., Park, Minjee, Parren, Marc, Parthasarathy, Narayanaswamy, Peri, Pablo L., Pfautsch, Sebastian, Phillips, Oliver L., Picard, Nicolas, Piedade, Maria Teresa T. F., Piotto, Daniel, Pitman, Nigel C. A., Polo, Irina, Poorter, Lourens, Poulsen, Axel D., Pretzsch, Hans, Ramirez Arevalo, Freddy, Restrepo-Correa, Zorayda, Rodeghiero, Mirco, Rolim, Samir G., Roopsind, Anand, Rovero, Francesco, Rutishauser, Ervan, Saikia, Purabi, Salas-Eljatib, Christian, Saner, Philippe, Schall, Peter, Schepaschenko, Dmitry, Scherer-Lorenzen, Michael, Schmid, Bernhard, Schöngart, Jochen, Searle, Eric B., Seben, Vladimír, Serra-Diaz, Josep M., Sheil, Douglas, Shvidenko, Anatoly Z., Silva-Espejo, Javier E., Silveira, Marcos, Singh, James, Sist, Plinio, Slik, Ferry, Sonké, Bonaventure, Souza, Alexandre F., Miscicki, Stanislaw, Stereńczak, Krzysztof J., Svenning, Jens-Christian, Svoboda, Miroslav, Swanepoel, Ben, Targhetta, Natalia, Tchebakova, Nadja, ter Steege, Hans, Thomas, Raquel, Tikhonova, Elena, Umunay, Peter M., Usoltsev, Vladimir A., Valencia, Renato, Valladares, Fernando, van der Plas, Fons, Do, Tran Van, van Nuland, Michael E., Vasquez, Rodolfo M., Verbeeck, Hans, Viana, Helder, Vibrans, Alexander C., Vieira, Simone, von Gadow, Klaus, Wang, Hua-Feng, Watson, James V., Werner, Gijsbert D. A., Wiser, Susan K., Wittmann, Florian, Woell, Hannsjoerg, Wortel, Verginia, Zagt, Roderik, Zawiła-Niedźwiecki, Tomasz, Zhang, Chunyu, Zhao, Xiuhai, Zhou, Mo, Zhu, Zhi-Xin, Zo-Bi, Irie C., and Maynard, Daniel S.

Published
2023
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18. CeMux: Maximizing the Accuracy of Stochastic Mux Adders and an Application to Filter Design

Author

Baker, Timothy J. and Hayes, John P.

Subjects
Computer Science - Emerging Technologies, B.2
Abstract

Stochastic computing (SC) is a low-cost computational paradigm that has promising applications in digital filter design, image processing and neural networks. Fundamental to these applications is the weighted addition operation which is most often implemented by a multiplexer (mux) tree. Mux-based adders have very low area but typically require long bit-streams to reach practical accuracy thresholds when the number of summands is large. In this work, we first identify the main contributors to mux adder error. We then demonstrate with analysis and experiment that two new techniques, precise sampling and full correlation, can target and mitigate these error sources. Implementing these techniques in hardware leads to the design of CeMux (Correlation-enhanced Multiplexer), a stochastic mux adder that is significantly more accurate and uses much less area than traditional weighted adders. We compare CeMux to other SC and hybrid designs for an electrocardiogram filtering case study that employs a large digital filter. One major result is that CeMux is shown to be accurate even for large input sizes. CeMux's higher accuracy leads to a latency reduction of 4x to 16x over other designs. Further, CeMux uses about 35% less area than existing designs, and we demonstrate that a small amount of accuracy can be traded for a further 50% reduction in area. Finally, we compare CeMux to a conventional binary design and we show that CeMux can achieve a 50 to 73% area reduction for similar power and latency as the conventional design, but at a slightly higher level of error.

Published
2021

21. Aboveground biomass density models for NASA’s Global Ecosystem Dynamics Investigation (GEDI) lidar mission

Author

Duncanson, Laura, Kellner, James R, Armston, John, Dubayah, Ralph, Minor, David M, Hancock, Steven, Healey, Sean P, Patterson, Paul L, Saarela, Svetlana, Marselis, Suzanne, Silva, Carlos E, Bruening, Jamis, Goetz, Scott J, Tang, Hao, Hofton, Michelle, Blair, Bryan, Luthcke, Scott, Fatoyinbo, Lola, Abernethy, Katharine, Alonso, Alfonso, Andersen, Hans-Erik, Aplin, Paul, Baker, Timothy R, Barbier, Nicolas, Bastin, Jean Francois, Biber, Peter, Boeckx, Pascal, Bogaert, Jan, Boschetti, Luigi, Boucher, Peter Brehm, Boyd, Doreen S, Burslem, David FRP, Calvo-Rodriguez, Sofia, Chave, Jérôme, Chazdon, Robin L, Clark, David B, Clark, Deborah A, Cohen, Warren B, Coomes, David A, Corona, Piermaria, Cushman, KC, Cutler, Mark EJ, Dalling, James W, Dalponte, Michele, Dash, Jonathan, de-Miguel, Sergio, Deng, Songqiu, Ellis, Peter Woods, Erasmus, Barend, Fekety, Patrick A, Fernandez-Landa, Alfredo, Ferraz, Antonio, Fischer, Rico, Fisher, Adrian G, García-Abril, Antonio, Gobakken, Terje, Hacker, Jorg M, Heurich, Marco, Hill, Ross A, Hopkinson, Chris, Huang, Huabing, Hubbell, Stephen P, Hudak, Andrew T, Huth, Andreas, Imbach, Benedikt, Jeffery, Kathryn J, Katoh, Masato, Kearsley, Elizabeth, Kenfack, David, Kljun, Natascha, Knapp, Nikolai, Král, Kamil, Krůček, Martin, Labrière, Nicolas, Lewis, Simon L, Longo, Marcos, Lucas, Richard M, Main, Russell, Manzanera, Jose A, Martínez, Rodolfo Vásquez, Mathieu, Renaud, Memiaghe, Herve, Meyer, Victoria, Mendoza, Abel Monteagudo, Monerris, Alessandra, Montesano, Paul, Morsdorf, Felix, Næsset, Erik, Naidoo, Laven, Nilus, Reuben, O’Brien, Michael, Orwig, David A, Papathanassiou, Konstantinos, Parker, Geoffrey, Philipson, Christopher, Phillips, Oliver L, Pisek, Jan, Poulsen, John R, Pretzsch, Hans, and Rüdiger, Christoph

Subjects
Earth Sciences, LiDAR, GEDI, Waveform, Forest, Aboveground biomass, Modeling, Physical Geography and Environmental Geoscience, Geomatic Engineering, Geological & Geomatics Engineering, Earth sciences
Abstract

NASA's Global Ecosystem Dynamics Investigation (GEDI) is collecting spaceborne full waveform lidar data with a primary science goal of producing accurate estimates of forest aboveground biomass density (AGBD). This paper presents the development of the models used to create GEDI's footprint-level (~25 m) AGBD (GEDI04_A) product, including a description of the datasets used and the procedure for final model selection. The data used to fit our models are from a compilation of globally distributed spatially and temporally coincident field and airborne lidar datasets, whereby we simulated GEDI-like waveforms from airborne lidar to build a calibration database. We used this database to expand the geographic extent of past waveform lidar studies, and divided the globe into four broad strata by Plant Functional Type (PFT) and six geographic regions. GEDI's waveform-to-biomass models take the form of parametric Ordinary Least Squares (OLS) models with simulated Relative Height (RH) metrics as predictor variables. From an exhaustive set of candidate models, we selected the best input predictor variables, and data transformations for each geographic stratum in the GEDI domain to produce a set of comprehensive predictive footprint-level models. We found that model selection frequently favored combinations of RH metrics at the 98th, 90th, 50th, and 10th height above ground-level percentiles (RH98, RH90, RH50, and RH10, respectively), but that inclusion of lower RH metrics (e.g. RH10) did not markedly improve model performance. Second, forced inclusion of RH98 in all models was important and did not degrade model performance, and the best performing models were parsimonious, typically having only 1-3 predictors. Third, stratification by geographic domain (PFT, geographic region) improved model performance in comparison to global models without stratification. Fourth, for the vast majority of strata, the best performing models were fit using square root transformation of field AGBD and/or height metrics. There was considerable variability in model performance across geographic strata, and areas with sparse training data and/or high AGBD values had the poorest performance. These models are used to produce global predictions of AGBD, but will be improved in the future as more and better training data become available.

Published
2022

22. Relations Among Cigarette Dependence, E-Cigarette Dependence, and Key Dependence Criteria Among Dual Users of Combustible and E-Cigarettes

Author

Piper, Megan E, Baker, Timothy B, Mermelstein, Robin, Benowitz, Neal, and Jorenby, Douglas E

Subjects
Biological Psychology, Clinical and Health Psychology, Psychology, Tobacco Smoke and Health, Substance Misuse, Brain Disorders, Prevention, Clinical Research, Tobacco, Good Health and Well Being, Adult, Electronic Nicotine Delivery Systems, Female, Humans, Male, Tobacco Products, Tobacco Smoking, Tobacco Use Disorder, Vaping, e-cigarettes, cigarettes, dependence, dual use, Substance Abuse, Biological psychology, Clinical and health psychology
Abstract

Objective: The aim of this study was to examine dependence on combustible and e-cigarettes among users of both products (dual users), which may provide important insights into long-term use patterns. Method: Dual users (smoking daily for 3 months, using e-cigarettes at least once/week for the past month; N = 256; 45% women, 71% White, M age 39.0 years) not interested in quitting either product participated in a longitudinal, 2-year, observational study. At baseline, participants completed measures of combustible and e-cigarette dependence (Fagerström Test of Cigarette Dependence [FTCD], e-FTCD, Wisconsin Inventory of Smoking Dependence Motives [WISDM], e-WISDM, Penn State Cigarette Dependence Index, and Penn State E-Cigarette Dependence Index) and carried a study smartphone for 2 weeks to record cigarette and e-cigarette use events. Results: Most measures of dependence were product specific (e.g., FTCD and e-FTCD were not correlated, r = -0.003) and predicted product-specific outcomes (e.g., long-term use of that product). However, individuals used the two products for some of the same secondary dependence motives (e.g., weight control, cognitive and affective enhancement). These secondary, or instrumental, motives predicted use of both products at 1 year. Which product was used first in the morning was strongly related to product dependence scores and likelihood of continued product use at 1 year. Conclusions: Among dual users of combustible and e-cigarettes, measures of e-cigarette and cigarette dependence tended to be unrelated to one another, but dual users tended to use both products for the same instrumental motives. Which product is used first in the morning may serve as a valuable measure of relative dependence on the two products. (PsycInfo Database Record (c) 2022 APA, all rights reserved).

Published
2022

23. The first 20 months of the COVID-19 pandemic: Mortality, intubation and ICU rates among 104,590 patients hospitalized at 21 United States health systems.

Author

Fiore, Michael C, Smith, Stevens S, Adsit, Robert T, Bolt, Daniel M, Conner, Karen L, Bernstein, Steven L, Eng, Oliver D, Lazuk, David, Gonzalez, Alec, Jorenby, Douglas E, D'Angelo, Heather, Kirsch, Julie A, Williams, Brian, Nolan, Margaret B, Hayes-Birchler, Todd, Kent, Sean, Kim, Hanna, Piasecki, Thomas M, Slutske, Wendy S, Lubanski, Stan, Yu, Menggang, Suk, Youmi, Cai, Yuxin, Kashyap, Nitu, Mathew, Jomol P, McMahan, Gabriel, Rolland, Betsy, Tindle, Hilary A, Warren, Graham W, An, Lawrence C, Boyd, Andrew D, Brunzell, Darlene H, Carrillo, Victor, Chen, Li-Shiun, Davis, James M, Dilip, Deepika, Ellerbeck, Edward F, Iturrate, Eduardo, Jose, Thulasee, Khanna, Niharika, King, Andrea, Klass, Elizabeth, Newman, Michael, Shoenbill, Kimberly A, Tong, Elisa, Tsoh, Janice Y, Wilson, Karen M, Theobald, Wendy E, and Baker, Timothy B

Subjects
Humans, Hospitalization, Hospital Mortality, Intubation, Intratracheal, Adult, Aged, Middle Aged, Intensive Care Units, Medicare, United States, Female, Male, Pandemics, COVID-19, Clinical Research, Prevention, Good Health and Well Being, General Science & Technology
Abstract

Main objectiveThere is limited information on how patient outcomes have changed during the COVID-19 pandemic. This study characterizes changes in mortality, intubation, and ICU admission rates during the first 20 months of the pandemic.Study design and methodsUniversity of Wisconsin researchers collected and harmonized electronic health record data from 1.1 million COVID-19 patients across 21 United States health systems from February 2020 through September 2021. The analysis comprised data from 104,590 adult hospitalized COVID-19 patients. Inclusion criteria for the analysis were: (1) age 18 years or older; (2) COVID-19 ICD-10 diagnosis during hospitalization and/or a positive COVID-19 PCR test in a 14-day window (+/- 7 days of hospital admission); and (3) health system contact prior to COVID-19 hospitalization. Outcomes assessed were: (1) mortality (primary), (2) endotracheal intubation, and (3) ICU admission.Results and significanceThe 104,590 hospitalized participants had a mean age of 61.7 years and were 50.4% female, 24% Black, and 56.8% White. Overall risk-standardized mortality (adjusted for age, sex, race, ethnicity, body mass index, insurance status and medical comorbidities) declined from 16% of hospitalized COVID-19 patients (95% CI: 16% to 17%) early in the pandemic (February-April 2020) to 9% (CI: 9% to 10%) later (July-September 2021). Among subpopulations, males (vs. females), those on Medicare (vs. those on commercial insurance), the severely obese (vs. normal weight), and those aged 60 and older (vs. younger individuals) had especially high mortality rates both early and late in the pandemic. ICU admission and intubation rates also declined across these 20 months.ConclusionsMortality, intubation, and ICU admission rates improved markedly over the first 20 months of the pandemic among adult hospitalized COVID-19 patients although gains varied by subpopulation. These data provide important information on the course of COVID-19 and identify hospitalized patient groups at heightened risk for negative outcomes.Trial registrationClinicalTrials.gov Identifier: NCT04506528 (https://clinicaltrials.gov/ct2/show/NCT04506528).

Published
2022

24. Basin-wide variation in tree hydraulic safety margins predicts the carbon balance of Amazon forests

Author

Tavares, Julia Valentim, Oliveira, Rafael S., Mencuccini, Maurizio, Signori-Müller, Caroline, Pereira, Luciano, Diniz, Francisco Carvalho, Gilpin, Martin, Marca Zevallos, Manuel J., Salas Yupayccana, Carlos A., Acosta, Martin, Pérez Mullisaca, Flor M., Barros, Fernanda de V., Bittencourt, Paulo, Jancoski, Halina, Scalon, Marina Corrêa, Marimon, Beatriz S., Oliveras Menor, Imma, Marimon, Jr, Ben Hur, Fancourt, Max, Chambers-Ostler, Alexander, Esquivel-Muelbert, Adriane, Rowland, Lucy, Meir, Patrick, Lola da Costa, Antonio Carlos, Nina, Alex, Sanchez, Jesus M. B., Tintaya, Jose S., Chino, Rudi S. C., Baca, Jean, Fernandes, Leticia, Cumapa, Edwin R. M., Santos, João Antônio R., Teixeira, Renata, Tello, Ligia, Ugarteche, Maira T. M., Cuellar, Gina A., Martinez, Franklin, Araujo-Murakami, Alejandro, Almeida, Everton, da Cruz, Wesley Jonatar Alves, del Aguila Pasquel, Jhon, Aragāo, Luís, Baker, Timothy R., de Camargo, Plinio Barbosa, Brienen, Roel, Castro, Wendeson, Ribeiro, Sabina Cerruto, Coelho de Souza, Fernanda, Cosio, Eric G., Davila Cardozo, Nallaret, da Costa Silva, Richarlly, Disney, Mathias, Espejo, Javier Silva, Feldpausch, Ted R., Ferreira, Leandro, Giacomin, Leandro, Higuchi, Niro, Hirota, Marina, Honorio, Euridice, Huaraca Huasco, Walter, Lewis, Simon, Flores Llampazo, Gerardo, Malhi, Yadvinder, Monteagudo Mendoza, Abel, Morandi, Paulo, Chama Moscoso, Victor, Muscarella, Robert, Penha, Deliane, Rocha, Mayda Cecília, Rodrigues, Gleicy, Ruschel, Ademir R., Salinas, Norma, Schlickmann, Monique, Silveira, Marcos, Talbot, Joey, Vásquez, Rodolfo, Vedovato, Laura, Vieira, Simone Aparecida, Phillips, Oliver L., Gloor, Emanuel, and Galbraith, David R.

Published
2023
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27. Assessment of Medical Student Burnout: Toward an Implicit Measure to Address Current Issues

Author

Smith, Gregory S., Houmanfar, Ramona A., Jacobs, Negar Nicole, Froehlich, Mary, Szarko, Alison J., Smith, Brooke M., Kemmelmeier, Markus, Baker, Timothy K., Piasecki, Melissa, and Schwenk, Thomas L.

Abstract

The feasibility of implicitly assessing medical student burnout was explored, using the Implicit Relational Assessment Procedure (IRAP), to measure longitudinal student burnout over the first two years of medical school and directly comparing it with an existing explicit measure of burnout (Maslach Burnout Inventory; MBI). Three successive cohorts of medical students completed both implicit and explicit measures of burnout at several time points during their first two years of medical school. Both assessments were conducted via the internet within a one-week period during the first week of medical school, the end of the first year of medical school, and the end of the second year, though not all cohorts were able to complete the assessments at all time points. Mixed linear models were used to compare the two measures directly, as well as to evaluate changes over time in each measure separately. Minimal correspondence was observed between the implicit and explicit measures of burnout on a within-subject basis. However, when analyzed separately, all subscales of both measures detected significant change over time in the direction of greater levels of burnout, particularly during the first year of medical school. These results provide preliminary evidence the IRAP is able to assess implicit attitudes related to burnout among medical students, though additional research is needed. The IRAP detected consistent improvements in positive implicit attitudes toward medical training during students' second year of medical school, which was not detected by the MBI. Possible implications of these findings are discussed.

Published
2022
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28. An investigation into pricing anomalies and the influence of information processing constraints on forecasts derived from sports betting markets

Author

Baker, Timothy Owen, Sung, Ming-Chien, Ma, Tiejun, and Johnson, Johnnie

Abstract

This thesis is made up of three separate papers, all of which explore how decision makers discount information in simplified financial markets where participants' behaviour can be easily segmented. Overall, this thesis provides a valuable contribution to the existing knowledge of pricing anomalies in betting markets by identifying uncharted research niches and adopting novel applications. The first paper explicitly examines how legacy information affects the accuracy of probability forecasts, utilising data from a low liquidity sports betting market where the demographic of bettors is predominantly homogeneous. The findings are important as they shed new light on the ability of participants to discount older information, especially as increasing amounts of past performance information are processed. The second paper explores the influence of order effects in horse race betting markets which are generally ranked from highest to the lowest quality of contenders. Research suggests the way information is presented can impact how effectively information is processed by individuals. This paper finds evidence of order effects in relation to more favoured contenders which has serious implications for the most widely researched phenomena in betting markets, that is, the favourite-longshot bias. The third paper takes a novel twist on a commonly employed benchmark model to focus purely on market makers' ability to frame accurate opening price odds. Paper three directly tests whether public information plays a role in price movements over the duration of betting. In particular, the findings challenge the current consensus in the literature.

Published
2021

29. Pantropical variability in tree crown allometry

Author

Panzou, Grace Jopaul Loubota, Fayolle, Adeline, Jucker, Tommaso, Phillips, Oliver L, Bohlman, Stephanie, Banin, Lindsay F, Lewis, Simon L, Affum‐Baffoe, Kofi, Alves, Luciana F, Antin, Cécile, Arets, Eric, Arroyo, Luzmila, Baker, Timothy R, Barbier, Nicolas, Beeckman, Hans, Berger, Uta, Bocko, Yannick Enock, Bongers, Frans, Bowers, Sam, Brade, Thom, Brondizio, Eduardo S, Chantrain, Arthur, Chave, Jerome, Compaore, Halidou, Coomes, David, Diallo, Adama, Dias, Arildo S, Dimobe, Kangbéni, Djagbletey, Gloria Djaney, Domingues, Tomas, Doucet, Jean‐Louis, Drouet, Thomas, Forni, Eric, Godlee, John L, Goodman, Rosa C, Gourlet‐Fleury, Sylvie, Hien, Fidele, Iida, Yoshiko, Ilondea, Bhely Angoboy, Muledi, Jonathan Ilunga, Jacques, Pierre, Kuyah, Shem, López‐Portillo, Jorge, Loumeto, Jean Joël, Marimon‐Junior, Ben Hur, Marimon, Beatriz Schwantes, Mensah, Sylvanus, Mitchard, Edward TA, Moncrieff, Glenn R, Narayanan, Ayyappan, O’Brien, Sean T, Ouedraogo, Korotimi, Palace, Michael W, Pelissier, Raphael, Ploton, Pierre, Poorter, Lourens, Ryan, Casey M, Saiz, Gustavo, Santos, Karin, Schlund, Michael, Sellan, Giacomo, Sonke, Bonaventure, Sterck, Frank, Thibaut, Quentin, Van Hoef, Yorick, Veenendaal, Elmar, Vovides, Alejandra G, Xu, Yaozhan, Yao, Tze Leong, and Feldpausch, Ted R

Subjects
Environmental Sciences, Ecological Applications, Environmental Management, crown allometry, environment, forest, precipitation, savanna, soil, stand&#8208, level variable, tropical biomes, Ecology
Abstract

Aim: Tree crowns determine light interception, carbon and water exchange. Thus, understanding the factors causing tree crown allometry to vary at the tree and stand level matters greatly for the development of future vegetation modelling and for the calibration of remote sensing products. Nevertheless, we know little about large-scale variation and determinants in tropical tree crown allometry. In this study, we explored the continental variation in scaling exponents of site-specific crown allometry and assessed their relationships with environmental and stand-level variables in the tropics. Location: Global tropics. Time period: Early 21st century. Major taxa studied: Woody plants. Methods: Using a dataset of 87,737 trees distributed among 245 forest and savanna sites across the tropics, we fitted site-specific allometric relationships between crown dimensions (crown depth, diameter and volume) and stem diameter using power-law models. Stand-level and environmental drivers of crown allometric relationships were assessed at pantropical and continental scales. Results: The scaling exponents of allometric relationships between stem diameter and crown dimensions were higher in savannas than in forests. We identified that continental crown models were better than pantropical crown models and that continental differences in crown allometric relationships were driven by both stand-level (wood density) and environmental (precipitation, cation exchange capacity and soil texture) variables for both tropical biomes. For a given diameter, forest trees from Asia and savanna trees from Australia had smaller crown dimensions than trees in Africa and America, with crown volumes for some Asian forest trees being smaller than those of trees in African forests. Main conclusions: Our results provide new insight into geographical variability, with large continental differences in tropical tree crown allometry that were driven by stand-level and environmental variables. They have implications for the assessment of ecosystem function and for the monitoring of woody biomass by remote sensing techniques in the global tropics.

Published
2021

33. Author Correction: Native diversity buffers against severity of non-native tree invasions

Author

Delavaux, Camille S., Crowther, Thomas W., Zohner, Constantin M., Robmann, Niamh M., Lauber, Thomas, van den Hoogen, Johan, Kuebbing, Sara, Liang, Jingjing, de-Miguel, Sergio, Nabuurs, Gert-Jan, Reich, Peter B., Abegg, Meinrad, Adou Yao, Yves C., Alberti, Giorgio, Almeyda Zambrano, Angelica M., Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F., Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A., Baker, Timothy R., Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G., Bastian, Meredith L., Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro H. S., Brandl, Susanne, Brienen, Roel, Broadbent, Eben N., Bruelheide, Helge, Bussotti, Filippo, Gatti, Roberto Cazzolla, César, Ricardo G., Cesljar, Goran, Chazdon, Robin, Chen, Han Y. H., Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D., Coomes, David A., Cornejo Valverde, Fernando, Corral-Rivas, José J., Crim, Philip M., Cumming, Jonathan R., Dayanandan, Selvadurai, de Gasper, André L., Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J., Eyre, Teresa J., Fandohan, Adandé Belarmain, Fayle, Tom M., Feldpausch, Ted R., Ferreira, Leandro V., Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gamarra, Javier G. P., Gianelle, Damiano, Glick, Henry B., Harris, David J., Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L., Herold, Martin, Hillers, Annika, Honorio Coronado, Eurídice N., Hui, Cang, Ibanez, Thomas T., Amaral, Iêda, Imai, Nobuo, Jagodziński, Andrzej M., Jaroszewicz, Bogdan, Johannsen, Vivian Kvist, Joly, Carlos A., Jucker, Tommaso, Jung, Ilbin, Karminov, Viktor, Kartawinata, Kuswata, Kearsley, Elizabeth, Kenfack, David, Kennard, Deborah K., Kepfer-Rojas, Sebastian, Keppel, Gunnar, Khan, Mohammed Latif, Killeen, Timothy J., Kim, Hyun Seok, Kitayama, Kanehiro, Köhl, Michael, Korjus, Henn, Kraxner, Florian, Laarmann, Diana, Lang, Mait, Lewis, Simon L., Lu, Huicui, Lukina, Natalia V., Maitner, Brian S., Malhi, Yadvinder, Marcon, Eric, Marimon, Beatriz Schwantes, Marimon-Junior, Ben Hur, Marshall, Andrew R., Martin, Emanuel H., Martynenko, Olga, Meave, Jorge A., Melo-Cruz, Omar, Mendoza, Casimiro, Merow, Cory, Mendoza, Abel Monteagudo, Moreno, Vanessa S., Mukul, Sharif A., Mundhenk, Philip, Nava-Miranda, María Guadalupe, Neill, David, Neldner, Victor J., Nevenic, Radovan V., Ngugi, Michael R., Niklaus, Pascal A., Oleksyn, Jacek, Ontikov, Petr, Ortiz-Malavasi, Edgar, Pan, Yude, Paquette, Alain, Parada-Gutierrez, Alexander, Parfenova, Elena I., Park, Minjee, Parren, Marc, Parthasarathy, Narayanaswamy, Peri, Pablo L., Pfautsch, Sebastian, Phillips, Oliver L., Picard, Nicolas, Piedade, Maria Teresa T. F., Piotto, Daniel, Pitman, Nigel C. A., Polo, Irina, Poorter, Lourens, Poulsen, Axel D., Pretzsch, Hans, Ramirez Arevalo, Freddy, Restrepo-Correa, Zorayda, Rodeghiero, Mirco, Rolim, Samir G., Roopsind, Anand, Rovero, Francesco, Rutishauser, Ervan, Saikia, Purabi, Salas-Eljatib, Christian, Saner, Philippe, Schall, Peter, Schepaschenko, Dmitry, Scherer-Lorenzen, Michael, Schmid, Bernhard, Schöngart, Jochen, Searle, Eric B., Seben, Vladimír, Serra-Diaz, Josep M., Sheil, Douglas, Shvidenko, Anatoly Z., Silva-Espejo, Javier E., Silveira, Marcos, Singh, James, Sist, Plinio, Slik, Ferry, Sonké, Bonaventure, Souza, Alexandre F., Miscicki, Stanislaw, Stereńczak, Krzysztof J., Svenning, Jens-Christian, Svoboda, Miroslav, Swanepoel, Ben, Targhetta, Natalia, Tchebakova, Nadja, ter Steege, Hans, Thomas, Raquel, Tikhonova, Elena, Umunay, Peter M., Usoltsev, Vladimir A., Valencia, Renato, Valladares, Fernando, van der Plas, Fons, Do, Tran Van, van Nuland, Michael E., Vasquez, Rodolfo M., Verbeeck, Hans, Viana, Helder, Vibrans, Alexander C., Vieira, Simone, von Gadow, Klaus, Wang, Hua-Feng, Watson, James V., Werner, Gijsbert D. A., Wiser, Susan K., Wittmann, Florian, Woell, Hannsjoerg, Wortel, Verginia, Zagt, Roderik, Zawiła-Niedźwiecki, Tomasz, Zhang, Chunyu, Zhao, Xiuhai, Zhou, Mo, Zhu, Zhi-Xin, Zo-Bi, Irie C., and Maynard, Daniel S.

Published
2023
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34. Co-limitation towards lower latitudes shapes global forest diversity gradients

Author

Liang, Jingjing, Gamarra, Javier G. P., Picard, Nicolas, Zhou, Mo, Pijanowski, Bryan, Jacobs, Douglass F., Reich, Peter B., Crowther, Thomas W., Nabuurs, Gert-Jan, de-Miguel, Sergio, Fang, Jingyun, Woodall, Christopher W., Svenning, Jens-Christian, Jucker, Tommaso, Bastin, Jean-Francois, Wiser, Susan K., Slik, Ferry, Hérault, Bruno, Alberti, Giorgio, Keppel, Gunnar, Hengeveld, Geerten M., Ibisch, Pierre L., Silva, Carlos A., ter Steege, Hans, Peri, Pablo L., Coomes, David A., Searle, Eric B., von Gadow, Klaus, Jaroszewicz, Bogdan, Abbasi, Akane O., Abegg, Meinrad, Yao, Yves C. Adou, Aguirre-Gutiérrez, Jesús, Zambrano, Angelica M. Almeyda, Altman, Jan, Alvarez-Dávila, Esteban, Álvarez-González, Juan Gabriel, Alves, Luciana F., Amani, Bienvenu H. K., Amani, Christian A., Ammer, Christian, Ilondea, Bhely Angoboy, Antón-Fernández, Clara, Avitabile, Valerio, Aymard, Gerardo A., Azihou, Akomian F., Baard, Johan A., Baker, Timothy R., Balazy, Radomir, Bastian, Meredith L., Batumike, Rodrigue, Bauters, Marijn, Beeckman, Hans, Benu, Nithanel Mikael Hendrik, Bitariho, Robert, Boeckx, Pascal, Bogaert, Jan, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro H. S., Brandl, Susanne, Brearley, Francis Q., Briseno-Reyes, Jaime, Broadbent, Eben N., Bruelheide, Helge, Bulte, Erwin, Catlin, Ann Christine, Cazzolla Gatti, Roberto, César, Ricardo G., Chen, Han Y. H., Chisholm, Chelsea, Cienciala, Emil, Colletta, Gabriel D., Corral-Rivas, José Javier, Cuchietti, Anibal, Cuni-Sanchez, Aida, Dar, Javid A., Dayanandan, Selvadurai, de Haulleville, Thales, Decuyper, Mathieu, Delabye, Sylvain, Derroire, Géraldine, DeVries, Ben, Diisi, John, Do, Tran Van, Dolezal, Jiri, Dourdain, Aurélie, Durrheim, Graham P., Obiang, Nestor Laurier Engone, Ewango, Corneille E. N., Eyre, Teresa J., Fayle, Tom M., Feunang, Lethicia Flavine N., Finér, Leena, Fischer, Markus, Fridman, Jonas, Frizzera, Lorenzo, de Gasper, André L., Gianelle, Damiano, Glick, Henry B., Gonzalez-Elizondo, Maria Socorro, Gorenstein, Lev, Habonayo, Richard, Hardy, Olivier J., Harris, David J., Hector, Andrew, Hemp, Andreas, Herold, Martin, Hillers, Annika, Hubau, Wannes, Ibanez, Thomas, Imai, Nobuo, Imani, Gerard, Jagodzinski, Andrzej M., Janecek, Stepan, Johannsen, Vivian Kvist, Joly, Carlos A., Jumbam, Blaise, Kabelong, Banoho L. P. R., Kahsay, Goytom Abraha, Karminov, Viktor, Kartawinata, Kuswata, Kassi, Justin N., Kearsley, Elizabeth, Kennard, Deborah K., Kepfer-Rojas, Sebastian, Khan, Mohammed Latif, Kigomo, John N., Kim, Hyun Seok, Klauberg, Carine, Klomberg, Yannick, Korjus, Henn, Kothandaraman, Subashree, Kraxner, Florian, Kumar, Amit, Kuswandi, Relawan, Lang, Mait, Lawes, Michael J., Leite, Rodrigo V., Lentner, Geoffrey, Lewis, Simon L., Libalah, Moses B., Lisingo, Janvier, López-Serrano, Pablito Marcelo, Lu, Huicui, Lukina, Natalia V., Lykke, Anne Mette, Maicher, Vincent, Maitner, Brian S., Marcon, Eric, Marshall, Andrew R., Martin, Emanuel H., Martynenko, Olga, Mbayu, Faustin M., Mbuvi, Musingo T. E., Meave, Jorge A., Merow, Cory, Miscicki, Stanislaw, Moreno, Vanessa S., Morera, Albert, Mukul, Sharif A., Müller, Jörg C., Murdjoko, Agustinus, Nava-Miranda, Maria Guadalupe, Ndive, Litonga Elias, Neldner, Victor J., Nevenic, Radovan V., Nforbelie, Louis N., Ngoh, Michael L., N’Guessan, Anny E., Ngugi, Michael R., Ngute, Alain S. K., Njila, Emile Narcisse N., Nyako, Melanie C., Ochuodho, Thomas O., Oleksyn, Jacek, Paquette, Alain, Parfenova, Elena I., Park, Minjee, Parren, Marc, Parthasarathy, Narayanaswamy, Pfautsch, Sebastian, Phillips, Oliver L., Piedade, Maria T. F., Piotto, Daniel, Pollastrini, Martina, Poorter, Lourens, Poulsen, John R., Poulsen, Axel Dalberg, Pretzsch, Hans, Rodeghiero, Mirco, Rolim, Samir G., Rovero, Francesco, Rutishauser, Ervan, Sagheb-Talebi, Khosro, Saikia, Purabi, Sainge, Moses Nsanyi, Salas-Eljatib, Christian, Salis, Antonello, Schall, Peter, Schepaschenko, Dmitry, Scherer-Lorenzen, Michael, Schmid, Bernhard, Schöngart, Jochen, Šebeň, Vladimír, Sellan, Giacomo, Selvi, Federico, Serra-Diaz, Josep M., Sheil, Douglas, Shvidenko, Anatoly Z., Sist, Plinio, Souza, Alexandre F., Stereńczak, Krzysztof J., Sullivan, Martin J. P., Sundarapandian, Somaiah, Svoboda, Miroslav, Swaine, Mike D., Targhetta, Natalia, Tchebakova, Nadja, Trethowan, Liam A., Tropek, Robert, Mukendi, John Tshibamba, Umunay, Peter Mbanda, Usoltsev, Vladimir A., Vaglio Laurin, Gaia, Valentini, Riccardo, Valladares, Fernando, van der Plas, Fons, Vega-Nieva, Daniel José, Verbeeck, Hans, Viana, Helder, Vibrans, Alexander C., Vieira, Simone A., Vleminckx, Jason, Waite, Catherine E., Wang, Hua-Feng, Wasingya, Eric Katembo, Wekesa, Chemuku, Westerlund, Bertil, Wittmann, Florian, Wortel, Verginia, Zawiła-Niedźwiecki, Tomasz, Zhang, Chunyu, Zhao, Xiuhai, Zhu, Jun, Zhu, Xiao, Zhu, Zhi-Xin, Zo-Bi, Irie C., and Hui, Cang

Published
2022
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35. The global abundance of tree palms

Author

Muscarella, Robert, Emilio, Thaise, Phillips, Oliver L, Lewis, Simon L, Slik, Ferry, Baker, William J, Couvreur, Thomas LP, Eiserhardt, Wolf L, Svenning, Jens‐Christian, Affum‐Baffoe, Kofi, Aiba, Shin‐Ichiro, Almeida, Everton C, Almeida, Samuel S, Oliveira, Edmar Almeida, Álvarez‐Dávila, Esteban, Alves, Luciana F, Alvez‐Valles, Carlos Mariano, Carvalho, Fabrício Alvim, Guarin, Fernando Alzate, Andrade, Ana, Aragão, Luis EOC, Murakami, Alejandro Araujo, Arroyo, Luzmila, Ashton, Peter S, Corredor, Gerardo A Aymard, Baker, Timothy R, Camargo, Plinio Barbosa, Barlow, Jos, Bastin, Jean‐François, Bengone, Natacha Nssi, Berenguer, Erika, Berry, Nicholas, Blanc, Lilian, Böhning‐Gaese, Katrin, Bonal, Damien, Bongers, Frans, Bradford, Matt, Brambach, Fabian, Brearley, Francis Q, Brewer, Steven W, Camargo, Jose LC, Campbell, David G, Castilho, Carolina V, Castro, Wendeson, Catchpole, Damien, Martínez, Carlos E Cerón, Chen, Shengbin, Chhang, Phourin, Cho, Percival, Chutipong, Wanlop, Clark, Connie, Collins, Murray, Comiskey, James A, Medina, Massiel Nataly Corrales, Costa, Flávia RC, Culmsee, Heike, David‐Higuita, Heriberto, Davidar, Priya, Aguila‐Pasquel, Jhon, Derroire, Géraldine, Di Fiore, Anthony, Van Do, Tran, Doucet, Jean‐Louis, Dourdain, Aurélie, Drake, Donald R, Ensslin, Andreas, Erwin, Terry, Ewango, Corneille EN, Ewers, Robert M, Fauset, Sophie, Feldpausch, Ted R, Ferreira, Joice, Ferreira, Leandro Valle, Fischer, Markus, Franklin, Janet, Fredriksson, Gabriella M, Gillespie, Thomas W, Gilpin, Martin, Gonmadje, Christelle, Gunatilleke, Arachchige Upali Nimal, Hakeem, Khalid Rehman, Hall, Jefferson S, Hamer, Keith C, Harris, David J, Harrison, Rhett D, Hector, Andrew, Hemp, Andreas, Herault, Bruno, Pizango, Carlos Gabriel Hidalgo, Coronado, Eurídice N Honorio, Hubau, Wannes, Hussain, Mohammad Shah, Ibrahim, Faridah‐Hanum, Imai, Nobuo, Joly, Carlos A, Joseph, Shijo, Anitha, K, Kartawinata, Kuswata, Kassi, Justin, and Killeen, Timothy J

Subjects
Life on Land, above-ground biomass, abundance patterns, Arecaceae, local abiotic conditions, Neotropics, pantropical biogeography, tropical rainforest, wood density, Ecology
Abstract

Aim: Palms are an iconic, diverse and often abundant component of tropical ecosystems that provide many ecosystem services. Being monocots, tree palms are evolutionarily, morphologically and physiologically distinct from other trees, and these differences have important consequences for ecosystem services (e.g., carbon sequestration and storage) and in terms of responses to climate change. We quantified global patterns of tree palm relative abundance to help improve understanding of tropical forests and reduce uncertainty about these ecosystems under climate change. Location: Tropical and subtropical moist forests. Time period: Current. Major taxa studied: Palms (Arecaceae). Methods: We assembled a pantropical dataset of 2,548 forest plots (covering 1,191 ha) and quantified tree palm (i.e., ≥10 cm diameter at breast height) abundance relative to co-occurring non-palm trees. We compared the relative abundance of tree palms across biogeographical realms and tested for associations with palaeoclimate stability, current climate, edaphic conditions and metrics of forest structure. Results: On average, the relative abundance of tree palms was more than five times larger between Neotropical locations and other biogeographical realms. Tree palms were absent in most locations outside the Neotropics but present in >80% of Neotropical locations. The relative abundance of tree palms was more strongly associated with local conditions (e.g., higher mean annual precipitation, lower soil fertility, shallower water table and lower plot mean wood density) than metrics of long-term climate stability. Life-form diversity also influenced the patterns; palm assemblages outside the Neotropics comprise many non-tree (e.g., climbing) palms. Finally, we show that tree palms can influence estimates of above-ground biomass, but the magnitude and direction of the effect require additional work. Conclusions: Tree palms are not only quintessentially tropical, but they are also overwhelmingly Neotropical. Future work to understand the contributions of tree palms to biomass estimates and carbon cycling will be particularly crucial in Neotropical forests.

Published
2020

36. E-cigarette Dependence Measures in Dual Users: Reliability and Relations With Dependence Criteria and E-cigarette Cessation

Author

Piper, Megan E, Baker, Timothy B, Benowitz, Neal L, Smith, Stevens S, and Jorenby, Douglas E

Subjects
Public Health, Health Sciences, Pediatric Research Initiative, Substance Misuse, Brain Disorders, Tobacco, Drug Abuse (NIDA only), Tobacco Smoke and Health, Clinical Research, Prevention, Good Health and Well Being, Adult, Behavior, Addictive, Electronic Nicotine Delivery Systems, Female, Humans, Longitudinal Studies, Male, Reproducibility of Results, Smokers, Smoking Cessation, Tobacco Smoking, Tobacco Use Disorder, Wisconsin, Clinical Sciences, Public Health and Health Services, Marketing, Epidemiology, Public health
Abstract

BackgroundElectronic cigarettes (e-cigarettes) have drastically changed the nicotine and tobacco product landscape. However, their potential public health impact is still unclear. A reliable and valid measure of e-cigarette dependence would likely advance assessment and prognostication of the public health impact of e-cigarettes. The aim of this research was to examine the internal consistency, structure, and validity of three e-cigarette dependence scales.MethodsAdult dual users (smokers who also vape, N = 256) enrolled in an observational cohort study (45.1% women, 70.7% white). At baseline, participants completed the e-cigarette Fagerström Test of Cigarette Dependence (e-FTCD), the e-cigarette Wisconsin Inventory of Smoking Dependence Motives (e-WISDM), and the Penn State Electronic Cigarette Dependence Index (PS-ECDI). All participants provided a urine sample for cotinine analysis and reported e-cigarette use at 1 year.ResultsThe e-WISDM subscales had the highest internal consistency (α = .81-.96), then the PS-ECDI (α = .74) and e-FTCD (α = .51). A single-factor structure for the e-FTCD and an 11-factor structure for the e-WISDM were supported, but the PS-ECDI did not have a single-factor structure. All three e-cigarette dependence scales were highly correlated with validation criteria including continued e-cigarette use at 1 year, but not with e-liquid nicotine concentration or cotinine.ConclusionsThe e-WISDM and PS-ECDI had stronger internal consistency than did the e-FTCD, despite the e-FTCD's single-factor structure, but all 3 measures appear to be valid measures of e-cigarette dependence as suggested by their significant relations with self-perceived addiction, heavy use, early use after overnight deprivation, and continued use over time.ImplicationsThis research provides empirical support for three e-cigarette dependence measures: the e-FTCD, the PS-ECDI, and the e-WISDM among dual users of e-cigarettes and combustible cigarettes. The PS-ECDI and e-WISDM are more reliable, but all three measures were strongly correlated with key dependence constructs such as heavy use and continued use over time.

Published
2020

37. Changes in Use Patterns Over 1 Year Among Smokers and Dual Users of Combustible and Electronic Cigarettes

Author

Piper, Megan E, Baker, Timothy B, Benowitz, Neal L, and Jorenby, Douglas E

Subjects
Epidemiology, Public Health, Health Sciences, Cancer, Substance Misuse, Prevention, Tobacco, Drug Abuse (NIDA only), Tobacco Smoke and Health, Bioengineering, Clinical Research, Good Health and Well Being, Adult, Electronic Nicotine Delivery Systems, Female, Humans, Longitudinal Studies, Male, Middle Aged, San Francisco, Smokers, Smoking, Smoking Cessation, Tobacco Products, Vaping, Clinical Sciences, Public Health and Health Services, Marketing, Public health
Abstract

BackgroundDual use of combustible and electronic cigarettes (e-cigarettes) is a growing use pattern; more than half of e-cigarette users are dual users. However, little is known regarding the course of dual use; for example, the likelihood of discontinuation of either combustible or e-cigarettes or both.MethodsAdult daily smokers and dual users (daily smokers who also vaped at least once per week) who did not intend to quit use of either product in the next 30 days participated in a longitudinal, observational study (N = 322, 51.2% women, 62.7% white, mean age = 42.27 [SD = 14.05]). At baseline, participants completed demographics and smoking and vaping history assessments. They also reported daily cigarette and e-cigarette use via timeline follow-back assessment and provided a breath sample for carbon monoxide assay at 4-month intervals for 1 year.ResultsOf those who completed the year 1 follow-up, 1.9% baseline smokers and 8.0% dual users achieved biochemically confirmed seven-day point-prevalence abstinence from combustible cigarettes (χ2 = 4.57, p = .03). Of initial dual users, by 1 year 43.9% were smoking only, 48.8% continued dual use, 5.9% were vaping only, and 1.4% abstained from both products. Among baseline smokers, 92.3% continued as exclusive smokers. Baseline dual users who continued e-cigarette use were more likely to be white and report higher baseline e-cigarette dependence.ConclusionsIn this community sample, the majority of dual users transitioned to exclusive smoking. A higher percentage of dual users quit smoking than smokers, but attrition and baseline differences between the groups compromise strong conclusions. Sustained e-cigarette use was related to baseline e-cigarette dependence.ImplicationsThis research suggests that dual use of combustible and e-cigarettes is not a sustained pattern for the majority of dual users, but it is more likely to be a continued pattern if the user is more dependent on e-cigarettes. There was evidence that dual users were more likely to quit smoking than exclusive smokers, but this may be due to factors other than their dual use.

Published
2020

38. Constructing protein polyhedra via orthogonal chemical interactions

Author

Golub, Eyal, Subramanian, Rohit H, Esselborn, Julian, Alberstein, Robert G, Bailey, Jake B, Chiong, Jerika A, Yan, Xiaodong, Booth, Timothy, Baker, Timothy S, and Tezcan, F Akif

Subjects
Generic health relevance, Coordination Complexes, Models, Molecular, Proteins, General Science & Technology
Abstract

Many proteins exist naturally as symmetrical homooligomers or homopolymers1. The emergent structural and functional properties of such protein assemblies have inspired extensive efforts in biomolecular design2-5. As synthesized by ribosomes, proteins are inherently asymmetric. Thus, they must acquire multiple surface patches that selectively associate to generate the different symmetry elements needed to form higher-order architectures1,6-a daunting task for protein design. Here we address this problem using an inorganic chemical approach, whereby multiple modes of protein-protein interactions and symmetry are simultaneously achieved by selective, 'one-pot' coordination of soft and hard metal ions. We show that a monomeric protein (protomer) appropriately modified with biologically inspired hydroxamate groups and zinc-binding motifs assembles through concurrent Fe3+ and Zn2+ coordination into discrete dodecameric and hexameric cages. Our cages closely resemble natural polyhedral protein architectures7,8 and are, to our knowledge, unique among designed systems9-13 in that they possess tightly packed shells devoid of large apertures. At the same time, they can assemble and disassemble in response to diverse stimuli, owing to their heterobimetallic construction on minimal interprotein-bonding footprints. With stoichiometries ranging from [2 Fe:9 Zn:6 protomers] to [8 Fe:21 Zn:12 protomers], these protein cages represent some of the compositionally most complex protein assemblies-or inorganic coordination complexes-obtained by design.

Published
2020

39. TRY plant trait database – enhanced coverage and open access

Author

Kattge, Jens, Bönisch, Gerhard, Díaz, Sandra, Lavorel, Sandra, Prentice, Iain Colin, Leadley, Paul, Tautenhahn, Susanne, Werner, Gijsbert DA, Aakala, Tuomas, Abedi, Mehdi, Acosta, Alicia TR, Adamidis, George C, Adamson, Kairi, Aiba, Masahiro, Albert, Cécile H, Alcántara, Julio M, C, Carolina Alcázar, Aleixo, Izabela, Ali, Hamada, Amiaud, Bernard, Ammer, Christian, Amoroso, Mariano M, Anand, Madhur, Anderson, Carolyn, Anten, Niels, Antos, Joseph, Apgaua, Deborah Mattos Guimarães, Ashman, Tia‐Lynn, Asmara, Degi Harja, Asner, Gregory P, Aspinwall, Michael, Atkin, Owen, Aubin, Isabelle, Baastrup‐Spohr, Lars, Bahalkeh, Khadijeh, Bahn, Michael, Baker, Timothy, Baker, William J, Bakker, Jan P, Baldocchi, Dennis, Baltzer, Jennifer, Banerjee, Arindam, Baranger, Anne, Barlow, Jos, Barneche, Diego R, Baruch, Zdravko, Bastianelli, Denis, Battles, John, Bauerle, William, Bauters, Marijn, Bazzato, Erika, Beckmann, Michael, Beeckman, Hans, Beierkuhnlein, Carl, Bekker, Renee, Belfry, Gavin, Belluau, Michael, Beloiu, Mirela, Benavides, Raquel, Benomar, Lahcen, Berdugo‐Lattke, Mary Lee, Berenguer, Erika, Bergamin, Rodrigo, Bergmann, Joana, Carlucci, Marcos Bergmann, Berner, Logan, Bernhardt‐Römermann, Markus, Bigler, Christof, Bjorkman, Anne D, Blackman, Chris, Blanco, Carolina, Blonder, Benjamin, Blumenthal, Dana, Bocanegra‐González, Kelly T, Boeckx, Pascal, Bohlman, Stephanie, Böhning‐Gaese, Katrin, Boisvert‐Marsh, Laura, Bond, William, Bond‐Lamberty, Ben, Boom, Arnoud, Boonman, Coline CF, Bordin, Kauane, Boughton, Elizabeth H, Boukili, Vanessa, Bowman, David MJS, Bravo, Sandra, Brendel, Marco Richard, Broadley, Martin R, Brown, Kerry A, Bruelheide, Helge, Brumnich, Federico, Bruun, Hans Henrik, Bruy, David, Buchanan, Serra W, Bucher, Solveig Franziska, Buchmann, Nina, Buitenwerf, Robert, Bunker, Daniel E, and Bürger, Jana

Subjects
Climate Change Impacts and Adaptation, Biological Sciences, Ecology, Environmental Sciences, Access to Information, Biodiversity, Ecosystem, Plants, data coverage, data integration, data representativeness, functional diversity, plant traits, TRY plant trait database, Nutrient Network, Biological sciences, Earth sciences, Environmental sciences
Abstract

Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.

Published
2020

41. Mapping peat thickness and carbon stocks of the central Congo Basin using field data

Author

Crezee, Bart, Dargie, Greta C., Ewango, Corneille E. N., Mitchard, Edward T. A., Emba B., Ovide, Kanyama T., Joseph, Bola, Pierre, Ndjango, Jean-Bosco N., Girkin, Nicholas T., Bocko, Yannick E., Ifo, Suspense A., Hubau, Wannes, Seidensticker, Dirk, Batumike, Rodrigue, Imani, Gérard, Cuní-Sanchez, Aida, Kiahtipes, Christopher A., Lebamba, Judicaël, Wotzka, Hans-Peter, Bean, Hollie, Baker, Timothy R., Baird, Andy J., Boom, Arnoud, Morris, Paul J., Page, Susan E., Lawson, Ian T., and Lewis, Simon L.

Published
2022
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44. Sustainable palm fruit harvesting as a pathway to conserve Amazon peatland forests

Author

Hidalgo Pizango, C. Gabriel, Honorio Coronado, Eurídice N., del Águila-Pasquel, Jhon, Flores Llampazo, Gerardo, de Jong, Johan, Córdova Oroche, César J., Reyna Huaymacari, José M., Carver, Steve J., del Castillo Torres, Dennis, Draper, Frederick C., Phillips, Oliver L., Roucoux, Katherine H., de Bruin, Sytze, Peña-Claros, Marielos, van der Zon, Marieke, Mitchell, Gordon, Lovett, Jon, García Mendoza, Gabriel, Gatica Saboya, Leticia, Irarica Pacaya, Julio, Brañas, Manuel Martín, Ramírez Paredes, Eliseo, and Baker, Timothy R.

Published
2022
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45. Risks to carbon storage from land-use change revealed by peat thickness maps of Peru

Author

Hastie, Adam, Honorio Coronado, Eurídice N., Reyna, José, Mitchard, Edward T. A., Åkesson, Christine M., Baker, Timothy R., Cole, Lydia E. S., Oroche, César. J. Córdova, Dargie, Greta, Dávila, Nállarett, De Grandi, Elsa Carla, Del Águila, Jhon, Del Castillo Torres, Dennis, De La Cruz Paiva, Ricardo, Draper, Frederick C., Flores, Gerardo, Grández, Julio, Hergoualc’h, Kristell, Householder, J. Ethan, Janovec, John P., Lähteenoja, Outi, Reyna, David, Rodríguez-Veiga, Pedro, Roucoux, Katherine H., Tobler, Mathias, Wheeler, Charlotte E., Williams, Mathew, and Lawson, Ian T.

Published
2022
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48. Dual Users Compared to Smokers: Demographics, Dependence, and Biomarkers

Author

Piper, Megan E, Baker, Timothy B, Benowitz, Neal L, Kobinsky, Kate H, and Jorenby, Douglas E

Subjects
Epidemiology, Public Health, Health Sciences, Substance Misuse, Brain Disorders, Prevention, Tobacco, Drug Abuse (NIDA only), Tobacco Smoke and Health, Cancer, Clinical Research, Prevention of disease and conditions, and promotion of well-being, 2.2 Factors relating to the physical environment, Aetiology, 3.1 Primary prevention interventions to modify behaviours or promote wellbeing, Good Health and Well Being, Adult, Age Factors, Cigarette Smoking, Cohort Studies, Demography, Electronic Nicotine Delivery Systems, Female, Humans, Longitudinal Studies, Male, Middle Aged, Smokers, Smoking Cessation, Socioeconomic Factors, Tobacco Products, Tobacco Use Disorder, United States, Vaping, Young Adult, Clinical Sciences, Public Health and Health Services, Marketing, Public health
Abstract

IntroductionThe availability of electronic cigarettes (e-cigarettes) has profoundly changed the tobacco product landscape. In the United States, almost 6 million adults use both combustible and e-cigarettes (ie, dual users). The goal of this study was to understand how smokers and dual users differ in terms of demographics, cigarette dependence, and exposure to carcinogens.MethodsAn observational cohort (smokers, n = 166, ≥5 cigarettes/day for 6 months and no e-cigarette use in 3 months; dual users, n = 256, smoked daily for 3 months and used e-cigarettes at least once/week for the past 3 months) completed baseline assessments of demographics, tobacco use, and dependence. They also provided breath samples for carbon monoxide (CO) assay and urine samples for cotinine, 3-hydroxycotinine, and 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanol (NNAL) assays.ResultsCompared to smokers, dual users (mean e-cigarette use = 5.5 days/week [SD = 1.9]) were significantly younger and more likely to be white, have more education, report a history of psychiatric co-morbidity, and smoke fewer cigarettes per day. There were no differences in CO, cotinine, or 3-hydroxycotinine levels; however, dual users had significantly lower levels of NNAL than did smokers. Most smokers and dual users had no plans to quit smoking within the next year; 91% of dual users planned to continue using e-cigarettes for at least the next year.ConclusionsIn this community sample, dual users are supplementing their smoking with e-cigarette use. Dual users, versus smokers, smoked fewer cigarettes per day and delayed their first cigarette of the day, but did not differ in quitting intentions.ImplicationsThis comparison of a community sample of established dual users and exclusive smokers addresses key questions of dependence and health risks of dual use in real-world settings. Dual users were more likely to be white, younger, have more than a high school education and have a psychiatric history. Dual users also smoked significantly fewer cigarettes and had lower levels of NNAL (a carcinogen), but they did not differ from exclusive smokers in CO or cotinine levels, suggesting that they supplemented their nicotine intake via e-cigarettes.

Published
2019

49. Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA

Author

Haack, Daniel B, Yan, Xiaodong, Zhang, Cheng, Hingey, Jason, Lyumkis, Dmitry, Baker, Timothy S, and Toor, Navtej

Subjects
Biochemistry and Cell Biology, Bioinformatics and Computational Biology, Biological Sciences, Genetics, Generic health relevance, Catalytic Domain, Cryoelectron Microscopy, Escherichia coli, Nucleic Acid Conformation, Protein Structure, Tertiary, RNA, RNA Splicing, RNA-Directed DNA Polymerase, Retroelements, Spliceosomes, RNA structure, cryo-EM, group II intron, maturase, retroelement, ribozyme, spliceosome, splicing, Medical and Health Sciences, Developmental Biology, Biological sciences, Biomedical and clinical sciences
Abstract

Group II introns are a class of retroelements that invade DNA through a copy-and-paste mechanism known as retrotransposition. Their coordinated activities occur within a complex that includes a maturase protein, which promotes splicing through an unknown mechanism. The mechanism of splice site exchange within the RNA active site during catalysis also remains unclear. We determined two cryo-EM structures at 3.6-Å resolution of a group II intron reverse splicing into DNA. These structures reveal that the branch-site domain VI helix swings 90°, enabling substrate exchange during DNA integration. The maturase assists catalysis through a transient RNA-protein contact with domain VI that positions the branch-site adenosine for lariat formation during forward splicing. These findings provide the first direct evidence of the role the maturase plays during group II intron catalysis. The domain VI dynamics closely parallel spliceosomal branch-site helix movement and provide strong evidence for a retroelement origin of the spliceosome.

Published
2019

50. Atomic structures of enterovirus D68 in complex with two monoclonal antibodies define distinct mechanisms of viral neutralization

Author

Zheng, Qingbing, Zhu, Rui, Xu, Longfa, He, Maozhou, Yan, Xiaodong, Liu, Dongxiao, Yin, Zhichao, Wu, Yangtao, Li, Yongchao, Yang, Lisheng, Hou, Wangheng, Li, Shuxuan, Li, Zizhen, Chen, Zhenqin, Li, Zhihai, Yu, Hai, Gu, Ying, Zhang, Jun, Baker, Timothy S, Zhou, Z Hong, Graham, Barney S, Cheng, Tong, Li, Shaowei, and Xia, Ningshao

Subjects
Microbiology, Biological Sciences, Infectious Diseases, Biotechnology, 2.2 Factors relating to the physical environment, Aetiology, 2.1 Biological and endogenous factors, Infection, Animals, Antibodies, Monoclonal, Antibodies, Neutralizing, Antigen-Antibody Complex, Capsid, Cell Adhesion Molecules, Cell Line, Tumor, Cryoelectron Microscopy, Enterovirus, Enterovirus D, Human, Humans, Mice, Mice, Inbred BALB C, Nerve Tissue Proteins, Medical Microbiology
Abstract

Enterovirus D68 (EV-D68) undergoes structural transformation between mature, cell-entry intermediate (A-particle) and empty forms throughout its life cycle. Structural information for the various forms and antibody-bound capsids will facilitate the development of effective vaccines and therapeutics against EV-D68 infection, which causes childhood respiratory and paralytic diseases worldwide. Here, we report the structures of three EV-D68 capsid states representing the virus at major phases. We further describe two original monoclonal antibodies (15C5 and 11G1) with distinct structurally defined mechanisms for virus neutralization. 15C5 and 11G1 engage the capsid loci at icosahedral three-fold and five-fold axes, respectively. To block viral attachment, 15C5 binds three forms of capsids, and triggers mature virions to transform into A-particles, mimicking engagement by the functional receptor ICAM-5, whereas 11G1 exclusively recognizes the A-particle. Our data provide a structural and molecular explanation for the transition of picornavirus capsid conformations and demonstrate distinct mechanisms for antibody-mediated neutralization.

Published
2019

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