15 results on '"Cointault F"'
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2. Multispectral band selection for imaging sensor design for vineyard disease detection: case of Flavescence Dorée
- Author
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Al-Saddik, H., Simon, J.C., Brousse, O., and Cointault, F.
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- 2017
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3. Protocol for the Definition of a Multi-Spectral Sensor for Specific Foliar Disease Detection: Case of “Flavescence Dorée”
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Al-Saddik, H., primary, Laybros, A., additional, Simon, J. C., additional, and Cointault, F., additional
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- 2018
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4. Pesticide Spray Characterisation using High Speed Imaging Techniques
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Minov, S. Vulgarakis, Cointault, F., Vangeyte, J., Pieters, J.G., and Nuyttens, D.
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- 2015
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5. Image Based Techniques for Determining Spread Patterns of Centrifugal Fertilizer Spreaders
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Cool, Simon, Pieters, J.G., Mertens, K.C., Nuyttens, D., Hijazi, B., Dubois, J., Cointault, F., and Vangeyte, J.
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- 2015
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6. Phénaufol - Mise au point d'outils et techniques de PHENotypage pour détecter AUtomatiquement les maladies FOLiaires de la betterave. Innovations Agronomiques 85, 279-288
- Author
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Joudelat, F., Dupin, S., Benet, B., Cointault, F., and Maupas, F.
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- 2022
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7. Assessment of the optimal spectral bands for designing a sensor for vineyard disease detection: the case of ‘Flavescence dorée’
- Author
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Al-Saddik, H., primary, Simon, J. C., additional, and Cointault, F., additional
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- 2018
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8. DEVELOPMENT OF HIGH-SPEED IMAGE ACQUISITION SYSTEMS FOR SPRAY CHARACTERIZATION BASED ON SINGLE-DROPLET EXPERIMENTS.
- Author
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Minov, S. Vulgarakis, Cointault, F., Vangeyte, J., Pieters, J. G., and Nuyttens, D.
- Subjects
- *
IMAGE processing , *PIEZOELECTRIC devices , *CAMERAS , *SPRAYING & dusting in agriculture , *FLUID dynamics - Abstract
Accurate spray and droplet characterization is important for increased understanding of the pesticide spray application process. The goal of this study was to develop two image acquisition systems based on single-droplet experiments using a piezoelectric single-droplet generator and a high-speed imaging technique, which will be used in a later stage of this study to evaluate micro and macro spray characteristics and droplet impact behavior. Experiments with different camera settings, lenses, diffusers, and light sources and the resulting image quality parameters showed the necessity of having a good image acquisition and processing system. The image analysis results contributed to selecting the optimal setup for measuring droplet size and velocity, which consisted of a high-speed camera with 6 µs exposure time, a microscope lens at a working distance of 430 mm resulting in a field of view of 10.5 mm x 8.4 mm, and a xenon backlight without a diffuser. The high-speed camera with a macro video zoom lens at a working distance of 143 mm with a larger field of view (88 mm x 110 mm) in combination with a halogen spotlight with a diffuser was found to have the best potential for measuring macro spray characteristics, such as the droplet trajectory, spray angle, and spray shape. [ABSTRACT FROM AUTHOR]
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- 2015
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9. Analyse spectrale et texturale de données à haute résolution pour la détection automatique des maladies de la vigne
- Author
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Al-Saddik, Hania, Agroécologie [Dijon], Université de Bourgogne (UB)-Institut National de la Recherche Agronomique (INRA)-Université Bourgogne Franche-Comté [COMUE] (UBFC)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Université de Bourgogne Franche-Comté, Cointault F, Simon J.C, and EL Mjiyad, Noureddine
- Subjects
capteur multispectral ,multispectral sensor ,[SDV]Life Sciences [q-bio] ,indices de végétation ,algorithmes génétiques ,grapevine diseases detection ,détection des maladies de la vigne ,genetic algorithms ,[SDV] Life Sciences [q-bio] ,successive projections algorithm ,feature selection ,classification ,algorithmes de projections successives ,vegetation indices ,analyse de texture ,sélection de caractéristiques ,texture analysis - Abstract
‘Flavescence dorée’ is a contagious and incurable disease present on the vine leaves. In order to contain the infection, the regulations require growers to control each of the vine rows and to remove the suspect vine plants. This monitoring is done on foot during the harvest and mobilizes many people during a strategic period for viticulture. In order to solve this problem, the DAMAV project (Automatic detection of Vine Diseases) aims to develop a solution for automated detection of vine diseases using a micro-drone. The goal is to offer a turnkey solution for wine growers. This tool will allow the search for potential foci, and then more generally any type of vine diseases detectable on the foliage. To enable this diagnosis, the foliage is proposed to be studied using a dedicated high-resolution multispectral camera. The objective of this PhD-thesis in the context of DAMAV is to participate in the design and implementation of the Multi-Spectral (MS) image acquisition system and to develop the image pre-processing algorithms, based on the most relevant spectral and textural characteristics related to ‘Flavescence dorée’. Several grapevine varieties were considered such as red-berried and white-berried ones; furthermore, other diseases than ‘Flavescence dorée’ (FD) such as Esca and ‘Bois noir’ (BN) were also tested under real production conditions. The PhD work was basically performed at a leaf-level scale and involved an acquisition step followed by a data analysis step. Most imaging techniques, used to detect diseases in field crops or vineyards, operate in the visible electromagnetic radiation range. It turns out that for disease detection, when the symptoms are already present, the visible may be sufficient, although the colorimetric information is not the only one to consider. In our case, it is advised to detect the disease as early as possible, the information of the visible spectrum does not seem sufficient and it is therefore necessary to investigate broader information. Reflectance responses of plant leaves can be obtained from short to long wavelengths with convenient sensors. These reflectance signatures describe the internal constituents of leaves. This means that the presence of a disease can modify the internal structure of the leaves and hence cause an alteration of its reflectance signature. A spectro-radiometer is used in our study to characterize reflectance responses of leaves in the field. Several samples at different growth stages were used for the tests. To define optimal reflectance features for grapevine disease detection (FD, Esca, BN), a new methodology that designs Spectral Disease Indices (SDIs) has been developed. It is based on two dimension reduction techniques, coupled with a classifier. The first feature selection technique uses the Genetic Algorithms (GA) and the second one relies on the Successive Projection Algorithm (SPA). The new resulting SDIs outperformed traditional Spectral Vegetation Indices (SVIs) and GA performed, in general, better than SPA. The features finally chosen can then be implemented as filters in the MS sensor. In general, the reflectance information was satisfying for finding infections (higher than 90% of accuracy for the best method) but wasn’t enough. The images acquired with the developed MS device can further be pre- processed by low-level techniques based on the calculation of texture parameters. Several texture processing techniques have been tested but only on colored images. A method that combines many texture features is elaborated, allowing to choose the best ones. We found that the combination of optimal textural information could provide a complementary mean for not only differentiating healthy from infected grapevine leaves (higher than 85% of accuracy), but also for grading the disease severity stages (higher than 73% of accuracy) and for discriminating among diseases (higher than 72% of accuracy). This is in accordance with the hypothesis that a MS camera can enable detection and identification of diseases in grapevine fields. The first experiments of the whole system “sensor-UAV” will be done during future acquisition campaigns in 2019., La Flavescence dorée est une maladie contagieuse et incurable de la vigne détectable sur les feuilles. Pour contenir l’infection, la réglementation impose aux producteurs le contrôle des rangs de vigne pour éliminer les plants suspects. Ce suivi se fait à pied pendant la récolte, et mobilise de nombreuses personnes pendant une période très stratégique en viticulture. Pour résoudre ce problème, le projet DAMAV (Détection Automatique des MAladies de la Vigne) a été mis en place, avec pour objectif de développer une solution de détection automatisée des maladies de la vigne à l’aide d’un micro-drone. Cet outil doit permettre la recherche des foyers potentiels de la Flavescence dorée, puis plus généralement de toute maladie détectable sur le feuillage à l’aide d’un outil multispectral dédié haute résolution. Dans le cadre de ce projet, cette thèse a pour objectif de participer à la conception et à l’implémentation du système d’acquisition multispectral et de développer les algorithmes de prétraitement d’images basés sur les caractéristiques spectrales et texturales les plus pertinentes reliées à la Flavescence dorée. Plusieurs variétés de vigne ont été considérées telles que des variétés rouges et blanches; de plus, d’autres maladies que ‘Flavescence dorée’ (FD) telles que Esca et ‘Bois noir’ (BN) ont également été testées dans des conditions de production réelles. Le travail de doctorat a été essentiellement réalisé au niveau feuille et a impliqué une étape d’acquisition suivie d’une étape d’analyse des données. La plupart des techniques d'imagerie, utilisées pour détecter les maladies dans les grandes cultures ou les vignobles, opèrent dans le domaine du visible. Il s'avère que pour la détection de la maladie lorsque les symptômes sont déjà présents, le visible peut être suffisant, bien que les informations colorimétriques ne soient pas les seules à devoir être prises en compte. Dans DAMAV, il est conseillé que la maladie soit détectée le plus tôt possible, l’information du spectre électromagnétique visible semble donc insuffisante. Des informations spectrales plus larges sont nécessaires, notamment dans l’infrarouge. Les réflectances des feuilles des plantes peuvent être obtenues sur les longueurs d'onde les plus courtes aux plus longues avec des capteurs convenables. Ces réflectances sont intimement liées aux composants internes des feuilles. Cela signifie que la présence d'une maladie peut modifier la structure interne des feuilles et donc altérer sa signature.Un spectro-radiomètre a été utilisé sur le terrain pour caractériser les signatures spectrales des feuilles à différents stades de croissance. Afin de déterminer les réflectances optimales pour la détection des maladies (FD, Esca, BN), une nouvelle méthodologie de conception d'indices de maladies (SDIs) basée sur deux techniques de réduction de dimensions, associées à un classifieur, a été mise en place. La première technique de sélection de variables utilise les Algorithmes Génétiques (GA) et la seconde s'appuie sur l'Algorithme de Projections Successives (SPA). Les nouveaux SDIs résultants surpassent les indices de végétation spectrales (SVIs) traditionnels et GA était en général meilleur que SPA. Les variables finalement choisies peuvent ainsi être implémentées en tant que filtres dans le capteur MS. Les informations de réflectance étaient satisfaisantes pour la recherche d’infections (plus que 90% de précision pour la meilleure méthode) mais n’étaient pas suffisantes. Ainsi, les images acquises par l’appareil MS peuvent être ensuite traitées par des techniques bas-niveau basées sur le calcul de paramètres de texture. Plusieurs techniques de traitement de texture ont été testées mais uniquement sur des images couleur. Une nouvelle méthode combinant plusieurs paramètres texturaux a été élaborée pour en choisir les meilleurs. Nous avons constaté que les informations texturales pouvaient constituer un moyen complémentaire non seulement pour différencier les feuilles de vigne saines des feuilles infectées (plus que 85% de précision), mais également pour classer le degré d’infestation des maladies (plus que 74% de précision) et pour distinguer entre les maladies (plus que 75% de précision). Ceci conforte l’hypothèse qu’une caméra multispectrale permet la détection et l’identification de maladies de la vigne en plein champ. Les premiers essais du dispositif « capteurs-drone » se dérouleront lors de la future campagne d’acquisition de 2019.
- Published
- 2019
10. In situ Phenotyping of Grapevine Root System Architecture by 2D or 3D Imaging: Advantages and Limits of Three Cultivation Methods.
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Krzyzaniak Y, Cointault F, Loupiac C, Bernaud E, Ott F, Salon C, Laybros A, Han S, Héloir MC, Adrian M, and Trouvelot S
- Abstract
The root system plays an essential role in the development and physiology of the plant, as well as in its response to various stresses. However, it is often insufficiently studied, mainly because it is difficult to visualize. For grapevine, a plant of major economic interest, there is a growing need to study the root system, in particular to assess its resistance to biotic and abiotic stresses, understand the decline that may affect it, and identify new ecofriendly production systems. In this context, we have evaluated and compared three distinct growing methods (hydroponics, plane, and cylindric rhizotrons) in order to describe relevant architectural root traits of grapevine cuttings (mode of grapevine propagation), and also two 2D- (hydroponics and rhizotron) and one 3D- (neutron tomography) imaging techniques for visualization and quantification of roots. We observed that hydroponics tubes are a system easy to implement but do not allow the direct quantification of root traits over time, conversely to 2D imaging in rhizotron. We demonstrated that neutron tomography is relevant to quantify the root volume. We have also produced a new automated analysis method of digital photographs, adapted for identifying adventitious roots as a feature of root architecture in rhizotrons. This method integrates image segmentation, skeletonization, detection of adventitious root skeleton, and adventitious root reconstruction. Although this study was targeted to grapevine, most of the results obtained could be extended to other plants propagated by cuttings. Image analysis methods could also be adapted to characterization of the root system from seedlings., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Krzyzaniak, Cointault, Loupiac, Bernaud, Ott, Salon, Laybros, Han, Héloir, Adrian and Trouvelot.)
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- 2021
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11. Protocol for the Definition of a Multi-Spectral Sensor for Specific Foliar Disease Detection: Case of "Flavescence Dorée".
- Author
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Al-Saddik H, Laybros A, Simon JC, and Cointault F
- Subjects
- Crops, Agricultural microbiology, Phytoplasma genetics, Plant Leaves microbiology, Polymerase Chain Reaction, Image Processing, Computer-Assisted instrumentation, Phytoplasma isolation & purification, Plant Diseases microbiology, Vitis microbiology
- Abstract
Flavescence Dorée (FD) is a contagious and incurable grapevine disease that can be perceived on leaves. In order to contain its spread, the regulations obligate winegrowers to control each plant and to remove the suspected ones. Nevertheless, this monitoring is performed during the harvest and mobilizes many people during a strategic period for viticulture. To solve this problem, we aim to develop a Multi-Spectral (MS) imaging device ensuring an automated grapevine disease detection solution. If embedded on a UAV, the tool can provide disease outbreaks locations in a geographical information system allowing localized and direct treatment of infected vines. The high-resolution MS camera aims to allow the identification of potential FD occurrence, but the procedure can, more generally, be used to detect any type of foliar diseases on any type of vegetation.Our work consists on defining the spectral bands of the multispectral camera, responsible for identifying the desired symptoms of the disease. In fact, the FD diseased samples were selected after establishing a Polymerase Chain Reaction (PCR) confirmation test and then a feature selection technique was applied to identify the best subset of wavelengths capable of detecting FD samples. An example of a preliminary version of the MS sensor was also presented along with the geometric and radiometric required corrections. An image analysis based on texture and neural networks was also detailed for an enhanced disease classification.
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- 2019
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12. Development of Spectral Disease Indices for 'Flavescence Dorée' Grapevine Disease Identification.
- Author
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Al-Saddik H, Simon JC, and Cointault F
- Subjects
- Agriculture, Plant Leaves, Vitis, Plant Diseases
- Abstract
Spectral measurements are employed in many precision agriculture applications, due to their ability to monitor the vegetation's health state. Spectral vegetation indices are one of the main techniques currently used in remote sensing activities, since they are related to biophysical and biochemical crop variables. Moreover, they have been evaluated in some studies as potentially beneficial for detecting or differentiating crop diseases. Flavescence Dorée (FD) is an infectious, incurable disease of the grapevine that can produce severe yield losses and, hence, compromise the stability of the vineyards. The aim of this study was to develop specific spectral disease indices (SDIs) for the detection of FD disease in grapevines. Spectral signatures of healthy and diseased grapevine leaves were measured with a non-imaging spectro-radiometer at two infection severity levels. The most discriminating wavelengths were selected by a genetic algorithm (GA) feature selection tool, the Spectral Disease Indices (SDIs) are designed by exhaustively testing all possible combinations of wavelengths chosen. The best weighted combination of a single wavelength and a normalized difference is chosen to create the index. The SDIs are tested for their ability to differentiate healthy from diseased vine leaves and they are compared to some common set of Spectral Vegetation Indices (SVIs). It was demonstrated that using vegetation indices was, in general, better than using complete spectral data and that SDIs specifically designed for FD performed better than traditional SVIs in most of cases. The precision of the classification is higher than 90%. This study demonstrates that SDIs have the potential to improve disease detection, identification and monitoring in precision agriculture applications., Competing Interests: The authors declare no conflict of interest.
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- 2017
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13. RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation.
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Jeudy C, Adrian M, Baussard C, Bernard C, Bernaud E, Bourion V, Busset H, Cabrera-Bosquet L, Cointault F, Han S, Lamboeuf M, Moreau D, Pivato B, Prudent M, Trouvelot S, Truong HN, Vernoud V, Voisin AS, Wipf D, and Salon C
- Abstract
Background: In order to maintain high yields while saving water and preserving non-renewable resources and thus limiting the use of chemical fertilizer, it is crucial to select plants with more efficient root systems. This could be achieved through an optimization of both root architecture and root uptake ability and/or through the improvement of positive plant interactions with microorganisms in the rhizosphere. The development of devices suitable for high-throughput phenotyping of root structures remains a major bottleneck., Results: Rhizotrons suitable for plant growth in controlled conditions and non-invasive image acquisition of plant shoot and root systems (RhizoTubes) are described. These RhizoTubes allow growing one to six plants simultaneously, having a maximum height of 1.1 m, up to 8 weeks, depending on plant species. Both shoot and root compartment can be imaged automatically and non-destructively throughout the experiment thanks to an imaging cabin (RhizoCab). RhizoCab contains robots and imaging equipment for obtaining high-resolution pictures of plant roots. Using this versatile experimental setup, we illustrate how some morphometric root traits can be determined for various species including model (Medicago truncatula), crops (Pisum sativum, Brassica napus, Vitis vinifera, Triticum aestivum) and weed (Vulpia myuros) species grown under non-limiting conditions or submitted to various abiotic and biotic constraints. The measurement of the root phenotypic traits using this system was compared to that obtained using "classic" growth conditions in pots., Conclusions: This integrated system, to include 1200 Rhizotubes, will allow high-throughput phenotyping of plant shoots and roots under various abiotic and biotic environmental conditions. Our system allows an easy visualization or extraction of roots and measurement of root traits for high-throughput or kinetic analyses. The utility of this system for studying root system architecture will greatly facilitate the identification of genetic and environmental determinants of key root traits involved in crop responses to stresses, including interactions with soil microorganisms.
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- 2016
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14. Spray Droplet Characterization from a Single Nozzle by High Speed Image Analysis Using an In-Focus Droplet Criterion.
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Minov SV, Cointault F, Vangeyte J, Pieters JG, and Nuyttens D
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- Particle Size, Pesticides chemistry, Wind, Agriculture, Image Processing, Computer-Assisted, Pesticides isolation & purification
- Abstract
Accurate spray characterization helps to better understand the pesticide spray application process. The goal of this research was to present the proof of principle of a droplet size and velocity measuring technique for different types of hydraulic spray nozzles using a high speed backlight image acquisition and analysis system. As only part of the drops of an agricultural spray can be in focus at any given moment, an in-focus criterion based on the gray level gradient was proposed to decide whether a given droplet is in focus or not. In a first experiment, differently sized droplets were generated with a piezoelectric generator and studied to establish the relationship between size and in-focus characteristics. In a second experiment, it was demonstrated that droplet sizes and velocities from a real sprayer could be measured reliably in a non-intrusive way using the newly developed image acquisition set-up and image processing. Measured droplet sizes ranged from 24 μm to 543 μm, depending on the nozzle type and size. Droplet velocities ranged from around 0.5 m/s to 12 m/s. The droplet size and velocity results were compared and related well with the results obtained with a Phase Doppler Particle Analyzer (PDPA).
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- 2016
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15. Development of a High Irradiance LED Configuration for Small Field of View Motion Estimation of Fertilizer Particles.
- Author
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Cool S, Pieters JG, Mertens KC, Mora S, Cointault F, Dubois J, van de Gucht T, and Vangeyte J
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- Algorithms, Light, Agriculture methods, Fertilizers, Imaging, Three-Dimensional methods, Lighting methods
- Abstract
Better characterization of the fertilizer spreading process, especially the fertilizer pattern distribution on the ground, requires an accurate measurement of individual particle properties and dynamics. Both 2D and 3D high speed imaging techniques have been developed for this purpose. To maximize the accuracy of the predictions, a specific illumination level is required. This paper describes the development of a high irradiance LED system for high speed motion estimation of fertilizer particles. A spectral sensitivity factor was used to select the optimal LED in relation to the used camera from a range of commercially available high power LEDs. A multiple objective genetic algorithm was used to find the optimal configuration of LEDs resulting in the most homogeneous irradiance in the target area. Simulations were carried out for different lenses and number of LEDs. The chosen configuration resulted in an average irradiance level of 452 W/m² with coefficient of variation less than 2%. The algorithm proved superior and more flexible to other approaches reported in the literature and can be used for various other applications.
- Published
- 2015
- Full Text
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