289 results on '"Croucher, Nicholas"'
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2. Pneumococcal within-host diversity during colonization, transmission and treatment
3. Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes
4. Detecting co-selection through excess linkage disequilibrium in bacterial genomes
5. Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA
6. Seamless, rapid and accurate analyses of outbreak genomic data using Split K-mer Analysis (SKA)
7. Estimating Between Country Migration in Pneumococcal Populations
8. Immune interface interference vaccines: An evolution‐informed approach to anti‐bacterial vaccine design
9. Rapid expansion and international spread of M1UK in the post-pandemic upsurge of Streptococcus pyogenes infections in United Kingdom
10. Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci
11. Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures
12. AmiA and AliA peptide ligands, found in Klebsiella pneumoniae, are imported into pneumococci and alter the transcriptome.
13. Klebsiella pneumoniae peptide hijacks a Streptococcus pneumoniae permease to subvert pneumococcal growth and colonization.
14. Designing ecologically optimized pneumococcal vaccines using population genomics
15. Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study
16. Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae
17. Detecting co-selection through excess linkage disequilibrium in bacterial genomes
18. Divergent serotype replacement trends and increasing diversity in pneumococcal disease in high income settings reduce the benefit of expanding vaccine valency
19. Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage
20. Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening
21. Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
22. Frequency-dependent selection in vaccine-associated pneumococcal population dynamics
23. Pneumococcal capsule expression is controlled through a conserved, distal cis-regulatory element during infection
24. Accurate and fast graph-based pangenome annotation and clustering with ggCaller
25. Β-Lactam Antibiotic Use Modulates Multi-Drug Resistant Clone Success in Escherichia Coli Populations: A Longitudinal Multi-Country Genomic Cohort Study
26. Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
27. Epidemiological dynamics of bacteriocin competition and antibiotic resistance
28. Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study
29. Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA
30. Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
31. Nitrofurantoin-resistant Escherichia coli in the UK: genetic determinants, diversity, and undetected occurrences
32. Targeted control of pneumolysin production by a mobile genetic element in Streptococcus pneumoniae
33. Supporting text and figures from Epidemiological dynamics of bacteriocin competition and antibiotic resistance
34. Diverse regulatory pathways modulate “bet hedging” of competence induction in epigenetically-differentiated phase variants ofStreptococcus pneumoniae
35. Pneumococcal within-host diversity during colonisation, transmission and treatment
36. Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
37. International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease
38. Genome-wide association, prediction and heritability in bacteria with application toStreptococcus pneumoniae
39. Alterations in chromosomal genes nfsA, nfsB, and ribE are associated with nitrofurantoin resistance in Escherichia coli from the United Kingdom
40. RCandy: an R package for visualizing homologous recombinations in bacterial genomes
41. Genome-wide association, prediction and heritability in bacteria
42. Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
43. Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study
44. Accurate and fast graph-based pangenome annotation and clustering with ggCaller
45. Diverse Genetic Determinants of Nitrofurantoin Resistance in UK Escherichia coli
46. Lineage‐specific evolution and gene flow in Listeria monocytogenes are independent of bacteriophages
47. Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci.
48. Additional file of Identification, variation and transcription of pneumococcal repeat sequences
49. Epidemiological dynamics of bacteriocin competition and antibiotic resistance
50. Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae
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