1. NFKBIZ polymorphisms and susceptibility to pneumococcal disease in European and African populations
- Author
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J A Scott, James A. Berkley, Shelley Segal, Fredrik O. Vannberg, Derrick W. Crook, N P Day, N Peshu, Davies Rjo., Hill Avs., Thomas N. Williams, Stephen J Chapman, Catrin E. Moore, Chiea Chuen Khor, and Anna Rautanen
- Subjects
Genetics ,Linkage disequilibrium ,Polymorphism, Genetic ,Bacterial disease ,Immunology ,Haplotype ,Black People ,Nuclear Proteins ,Single-nucleotide polymorphism ,Odds ratio ,Biology ,Linkage Disequilibrium ,Pneumococcal Infections ,White People ,Article ,Loss of heterozygosity ,Case-Control Studies ,Genotype ,Humans ,I-kappa B Proteins ,Allele ,Genetics (clinical) ,Adaptor Proteins, Signal Transducing - Abstract
The proinflammatory transcription factor nuclear factor-kappaB (NF-κB) plays a central role in host defence against pneumococcal disease. Both rare mutations and common polymorphisms in the NFKBIA gene encoding the NF-κB inhibitor IκB-α associate with susceptibility to bacterial disease, but the possible role of polymorphisms within the related IκB-ζ gene NFKBIZ in the development of invasive pneumococcal disease has not previously been reported. To investigate this further, we examined the frequencies of 22 single-nucleotide polymorphisms spanning NFKBIZ in two case-control studies, comprising UK Caucasian (n=1008) and Kenyan (n=723) individuals. Nine polymorphisms within a single UK linkage disequilibrium block and all four polymorphisms within the equivalent, shorter Kenyan linkage disequilibrium block displayed either significant association with invasive pneumococcal disease or a trend towards association. For each polymorphism, heterozygosity was associated with protection from invasive pneumococcal disease when compared to the combined homozygous states (e.g. for rs600718, Mantel-Haenszel 2×2 χ2=7.576, P=0.006, OR=0.67, 95% CI for OR: 0.51-0.88; for rs616597, Mantel-Haenszel 2×2 χ2=8.715, P=0.003, OR=0.65, 95% CI: 0.49-0.86). We conclude that multiple NFKBIZ polymorphisms associate with susceptibility to invasive pneumococcal disease in humans. The study of multiple populations may aid fine-mapping of associations within extensive regions of strong linkage disequilibrium (‘transethnic mapping’).
- Published
- 2016