40 results on '"De Bruyne, Marieke"'
Search Results
2. Diagnostic yield of an inherited retinal disease gene panel in retinopathy of unknown origin
- Author
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Abramowicz, Stéphane, Meunier, Audrey, Postelmans, Laurence, Caspers, Laure, Corazza, Francis, De Bruyne, Marieke, Van de Sompele, Stijn, De Baere, Elfride, Leroy, Bart P., Willermain, François, and Draganova, Dafina
- Published
- 2024
- Full Text
- View/download PDF
3. Dominant-negative mutations in human IL6ST underlie hyper-IgE syndrome.
- Author
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Béziat, Vivien, Tavernier, Simon J, Chen, Yin-Huai, Ma, Cindy S, Materna, Marie, Laurence, Arian, Staal, Jens, Aschenbrenner, Dominik, Roels, Lisa, Worley, Lisa, Claes, Kathleen, Gartner, Lisa, Kohn, Lisa A, De Bruyne, Marieke, Schmitz-Abe, Klaus, Charbonnier, Louis-Marie, Keles, Sevgi, Nammour, Justine, Vladikine, Natasha, Maglorius Renkilaraj, Majistor Raj Luxman, Seeleuthner, Yoann, Migaud, Mélanie, Rosain, Jérémie, Jeljeli, Mohamed, Boisson, Bertrand, Van Braeckel, Eva, Rosenfeld, Jill A, Dai, Hongzheng, Burrage, Lindsay C, Murdock, David R, Lambrecht, Bart N, Avettand-Fenoel, Véronique, Vogel, Tiphanie P, Undiagnosed Diseases Network, Esther, Charles R, Haskologlu, Sule, Dogu, Figen, Ciznar, Peter, Boutboul, David, Ouachée-Chardin, Marie, Amourette, Jean, Lebras, Marie-Noëlle, Gauvain, Clément, Tcherakian, Colas, Ikinciogullari, Aydan, Beyaert, Rudi, Abel, Laurent, Milner, Joshua D, Grimbacher, Bodo, Couderc, Louis-Jean, Butte, Manish J, Freeman, Alexandra F, Catherinot, Émilie, Fieschi, Claire, Chatila, Talal A, Tangye, Stuart G, Uhlig, Holm H, Haerynck, Filomeen, Casanova, Jean-Laurent, and Puel, Anne
- Subjects
Undiagnosed Diseases Network ,Th2 Cells ,Cells ,Cultured ,Cell Membrane ,Fibroblasts ,Humans ,C-Reactive Protein ,Cytokines ,Pedigree ,Genetics ,Population ,Up-Regulation ,Kinetics ,Genes ,Dominant ,Phenotype ,Mutation ,Alleles ,Models ,Biological ,Adolescent ,Middle Aged ,Child ,Female ,Male ,Cytokine Receptor gp130 ,Young Adult ,HEK293 Cells ,Job Syndrome ,Loss of Function Mutation ,Cells ,Cultured ,Genetics ,Population ,Genes ,Dominant ,Models ,Biological ,Medical and Health Sciences ,Immunology - Abstract
Autosomal dominant hyper-IgE syndrome (AD-HIES) is typically caused by dominant-negative (DN) STAT3 mutations. Patients suffer from cold staphylococcal lesions and mucocutaneous candidiasis, severe allergy, and skeletal abnormalities. We report 12 patients from 8 unrelated kindreds with AD-HIES due to DN IL6ST mutations. We identified seven different truncating mutations, one of which was recurrent. The mutant alleles encode GP130 receptors bearing the transmembrane domain but lacking both the recycling motif and all four STAT3-recruiting tyrosine residues. Upon overexpression, the mutant proteins accumulate at the cell surface and are loss of function and DN for cellular responses to IL-6, IL-11, LIF, and OSM. Moreover, the patients' heterozygous leukocytes and fibroblasts respond poorly to IL-6 and IL-11. Consistently, patients with STAT3 and IL6ST mutations display infectious and allergic manifestations of IL-6R deficiency, and some of the skeletal abnormalities of IL-11R deficiency. DN STAT3 and IL6ST mutations thus appear to underlie clinical phenocopies through impairment of the IL-6 and IL-11 response pathways.
- Published
- 2020
4. Mutations in RNU7-1 Weaken Secondary RNA Structure, Induce MCP-1 and CXCL10 in CSF, and Result in Aicardi-Goutières Syndrome with Severe End-Organ Involvement
- Author
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Naesens, Leslie, Nemegeer, Josephine, Roelens, Filip, Vallaeys, Lore, Meuwissen, Marije, Janssens, Katrien, Verloo, Patrick, Ogunjimi, Benson, Hemelsoet, Dimitri, Hoste, Levi, Roels, Lisa, De Bruyne, Marieke, De Baere, Elfride, Van Dorpe, Jo, Dendooven, Amélie, Sieben, Anne, Rice, Gillian I., Kerre, Tessa, Beyaert, Rudi, Uggenti, Carolina, Crow, Yanick J., Tavernier, Simon J., Maelfait, Jonathan, and Haerynck, Filomeen
- Published
- 2022
- Full Text
- View/download PDF
5. Expanding the genetic landscape of Usher syndrome type IV caused by pathogenic ARSG variants.
- Author
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Bauwens, Miriam, De Man, Vincent, Audo, Isabelle, Balikova, Irina, Zein, Wadih M., Smirnov, Vasily, Held, Sebastian, Vermeer, Sascha, Loos, Elke, Jacob, Julie, Casteels, Ingele, Désir, Julie, Depasse, Fanny, Van de Sompele, Stijn, Van Heetvelde, Mattias, De Bruyne, Marieke, Andrieu, Camille, Condroyer, Christel, Antonio, Aline, and Hufnagel, Robert
- Subjects
SENSORINEURAL hearing loss ,USHER'S syndrome ,GENETIC disorders ,NEURONAL ceroid-lipofuscinosis ,SULFATASES - Abstract
Usher syndrome (USH) is the most common cause of deafblindness. USH is autosomal recessively inherited and characterized by rod‐cone dystrophy or retinitis pigmentosa (RP), often accompanied by sensorineural hearing loss. Variants in >15 genes have been identified as causative for clinically and genetically distinct subtypes. Among the ultra‐rare and recently discovered genes is ARSG, coding for the lysosomal sulfatase Arylsulfatase G. This subtype was assigned as "USH IV" with a late onset of RP and usually late‐onset progressive SNHL without vestibular involvement. Here, we describe nine new subjects and the clinical description of four cases with the USH IV phenotype bearing seven novel and two known pathogenic variants. Functional experiments indicated the complete loss of sulfatase enzymatic activity upon ectopic expression of mutated ARSG cDNA. Interestingly, we identified a homozygous missense variant, p.(Arg99His), previously described in dogs with neuronal ceroid lipofuscinosis. Our study expands the genetic landscape of ARSG‐USH IV and the number of known subjects by more than 30%. These findings highlight that USH IV likely has been underdiagnosed and emphasize the need to test molecularly unresolved subjects with deafblindness syndrome. Finally, testing of ARSG should be considered for the genetic work‐up of apparent isolated inherited retinal diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2025
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6. Phenocopy of a heterozygous carrier of X-linked retinitis pigmentosa due to mosaicism for a RHO variant
- Author
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Strubbe, Ine, Van Cauwenbergh, Caroline, De Zaeytijd, Julie, De Jaegere, Sarah, De Bruyne, Marieke, Rosseel, Toon, Van de Sompele, Stijn, De Baere, Elfride, and Leroy, Bart P.
- Published
- 2021
- Full Text
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7. Compendium of Clinical Variant Classification for 2,246 Unique ABCA4 Variants to Clarify Variant Pathogenicity in Stargardt Disease Using a Modified ACMG/AMP Framework
- Author
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Cornelis, Stéphanie S., primary, Bauwens, Miriam, additional, Haer-Wigman, Lonneke, additional, De Bruyne, Marieke, additional, Pantrangi, Madhulatha, additional, De Baere, Elfride, additional, Hufnagel, Robert B., additional, Dhaenens, Claire-Marie, additional, and Cremers, Frans P. M., additional
- Published
- 2023
- Full Text
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8. Cost-effective sequence analysis of 113 genes in 1,192 probands with retinitis pigmentosa and Leber congenital amaurosis
- Author
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Novartis, Foundation Fighting Blindness, Ghent University, Research Foundation - Flanders, European Commission, Panneman, Daan M., Hitti-Malin, Rebekkah J., Holtes, Lara K., Bruijn, Suzanne E. de, Reurink, Janine, Boonen, Erica G. M., Khan, Muhammad Imran, Ali, Manir, Andréasson, Sten, De Baere, Elfride, Banfi, Sandro, Bauwens, Miriam, Ben-Yosef, Tamar, Bocquet, Béatrice, De Bruyne, Marieke, Cerda, Berta de la, Coppieters, Frauke, Farinelli, Pietro, Guignard, Thomas, Inglehearn, Chris F., Karali, Marianthi, Kjellström, Ulrika, Koenekoop, Robert, Koning, Bart de, Leroy, Bart P., McKibbin, Martin, Meunier, Isabelle, Nikopoulos, Konstantinos, Nishiguchi, Koji M., Poulter, James A., Rivolta, Carlo, Rodríguez de la Rúa, Enrique, Saunders, Patrick, Simonelli, Francesca, Tatour, Yasmin, Testa, Francesco, Thiadens, Alberta A. H. J., Toomes, Carmel, Tracewska, Anna M., Tran, Hoai Viet, Ushida, Hiroaki, Vaclavik, Veronika, Verhoeven, Virginie J. M., Vorst, Maartje van de, Gilissen, Christian, Hoischen, Alexander, Cremers, Frans P. M., Roosing, Susanne, Novartis, Foundation Fighting Blindness, Ghent University, Research Foundation - Flanders, European Commission, Panneman, Daan M., Hitti-Malin, Rebekkah J., Holtes, Lara K., Bruijn, Suzanne E. de, Reurink, Janine, Boonen, Erica G. M., Khan, Muhammad Imran, Ali, Manir, Andréasson, Sten, De Baere, Elfride, Banfi, Sandro, Bauwens, Miriam, Ben-Yosef, Tamar, Bocquet, Béatrice, De Bruyne, Marieke, Cerda, Berta de la, Coppieters, Frauke, Farinelli, Pietro, Guignard, Thomas, Inglehearn, Chris F., Karali, Marianthi, Kjellström, Ulrika, Koenekoop, Robert, Koning, Bart de, Leroy, Bart P., McKibbin, Martin, Meunier, Isabelle, Nikopoulos, Konstantinos, Nishiguchi, Koji M., Poulter, James A., Rivolta, Carlo, Rodríguez de la Rúa, Enrique, Saunders, Patrick, Simonelli, Francesca, Tatour, Yasmin, Testa, Francesco, Thiadens, Alberta A. H. J., Toomes, Carmel, Tracewska, Anna M., Tran, Hoai Viet, Ushida, Hiroaki, Vaclavik, Veronika, Verhoeven, Virginie J. M., Vorst, Maartje van de, Gilissen, Christian, Hoischen, Alexander, Cremers, Frans P. M., and Roosing, Susanne
- Abstract
Introduction: Retinitis pigmentosa (RP) and Leber congenital amaurosis (LCA) are two groups of inherited retinal diseases (IRDs) where the rod photoreceptors degenerate followed by the cone photoreceptors of the retina. A genetic diagnosis for IRDs is challenging since >280 genes are associated with these conditions. While whole exome sequencing (WES) is commonly used by diagnostic facilities, the costs and required infrastructure prevent its global applicability. Previous studies have shown the cost-effectiveness of sequence analysis using single molecule Molecular Inversion Probes (smMIPs) in a cohort of patients diagnosed with Stargardt disease and other maculopathies. Methods: Here, we introduce a smMIPs panel that targets the exons and splice sites of all currently known genes associated with RP and LCA, the entire RPE65 gene, known causative deep-intronic variants leading to pseudo-exons, and part of the RP17 region associated with autosomal dominant RP, by using a total of 16,812 smMIPs. The RP-LCA smMIPs panel was used to screen 1,192 probands from an international cohort of predominantly RP and LCA cases. Results and discussion: After genetic analysis, a diagnostic yield of 56% was obtained which is on par with results from WES analysis. The effectiveness and the reduced costs compared to WES renders the RP-LCA smMIPs panel a competitive approach to provide IRD patients with a genetic diagnosis, especially in countries with restricted access to genetic testing.
- Published
- 2023
9. Cost-effective sequence analysis of 113 genes in 1,192 probands with retinitis pigmentosa and Leber congenital amaurosis
- Author
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Panneman, Daan M., Hitti-Malin, Rebekkah J., Holtes, Lara K., de Bruijn, Suzanne E., Reurink, Janine, Boonen, Erica G.M., Khan, Muhammad Imran, Ali, Manir, Andréasson, Sten, De Baere, Elfride, Banfi, Sandro, Bauwens, Miriam, Ben-Yosef, Tamar, Bocquet, Béatrice, De Bruyne, Marieke, Cerda, Berta de la, Coppieters, Frauke, Farinelli, Pietro, Guignard, Thomas, Inglehearn, Chris F., Karali, Marianthi, Kjellström, Ulrika, Koenekoop, Robert, de Koning, Bart, Leroy, Bart P., McKibbin, Martin, Meunier, Isabelle, Nikopoulos, Konstantinos, Nishiguchi, Koji M., Poulter, James A., Rivolta, Carlo, Rodríguez de la Rúa, Enrique, Saunders, Patrick, Simonelli, Francesca, Tatour, Yasmin, Testa, Francesco, Thiadens, Alberta A.H.J., Toomes, Carmel, Tracewska, Anna M., Tran, Hoai Viet, Ushida, Hiroaki, Vaclavik, Veronika, Verhoeven, Virginie J.M., van de Vorst, Maartje, Gilissen, Christian, Hoischen, Alexander, Cremers, Frans P.M., Roosing, Susanne, Panneman, Daan M., Hitti-Malin, Rebekkah J., Holtes, Lara K., de Bruijn, Suzanne E., Reurink, Janine, Boonen, Erica G.M., Khan, Muhammad Imran, Ali, Manir, Andréasson, Sten, De Baere, Elfride, Banfi, Sandro, Bauwens, Miriam, Ben-Yosef, Tamar, Bocquet, Béatrice, De Bruyne, Marieke, Cerda, Berta de la, Coppieters, Frauke, Farinelli, Pietro, Guignard, Thomas, Inglehearn, Chris F., Karali, Marianthi, Kjellström, Ulrika, Koenekoop, Robert, de Koning, Bart, Leroy, Bart P., McKibbin, Martin, Meunier, Isabelle, Nikopoulos, Konstantinos, Nishiguchi, Koji M., Poulter, James A., Rivolta, Carlo, Rodríguez de la Rúa, Enrique, Saunders, Patrick, Simonelli, Francesca, Tatour, Yasmin, Testa, Francesco, Thiadens, Alberta A.H.J., Toomes, Carmel, Tracewska, Anna M., Tran, Hoai Viet, Ushida, Hiroaki, Vaclavik, Veronika, Verhoeven, Virginie J.M., van de Vorst, Maartje, Gilissen, Christian, Hoischen, Alexander, Cremers, Frans P.M., and Roosing, Susanne
- Abstract
Introduction: Retinitis pigmentosa (RP) and Leber congenital amaurosis (LCA) are two groups of inherited retinal diseases (IRDs) where the rod photoreceptors degenerate followed by the cone photoreceptors of the retina. A genetic diagnosis for IRDs is challenging since >280 genes are associated with these conditions. While whole exome sequencing (WES) is commonly used by diagnostic facilities, the costs and required infrastructure prevent its global applicability. Previous studies have shown the cost-effectiveness of sequence analysis using single molecule Molecular Inversion Probes (smMIPs) in a cohort of patients diagnosed with Stargardt disease and other maculopathies. Methods: Here, we introduce a smMIPs panel that targets the exons and splice sites of all currently known genes associated with RP and LCA, the entire RPE65 gene, known causative deep-intronic variants leading to pseudo-exons, and part of the RP17 region associated with autosomal dominant RP, by using a total of 16,812 smMIPs. The RP-LCA smMIPs panel was used to screen 1,192 probands from an international cohort of predominantly RP and LCA cases. Results and discussion: After genetic analysis, a diagnostic yield of 56% was obtained which is on par with results from WES analysis. The effectiveness and the reduced costs compared to WES renders the RP-LCA smMIPs panel a competitive approach to provide IRD patients with a genetic diagnosis, especially in countries with restricted access to genetic testing.
- Published
- 2023
10. Compendium of clinical variant classification for 2,247 unique ABCA4 variants to improve genetic medicine access for Stargardt Disease
- Author
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Cornelis, Stephanie S., primary, Bauwens, Miriam, additional, Haer-Wigman, Lonneke, additional, de Bruyne, Marieke, additional, Pantrangi, Madhulatha, additional, De Baere, Elfride, additional, Hufnagel, Robert B., additional, Dhaenens, Claire-Marie, additional, and Cremers, Frans P.M., additional
- Published
- 2023
- Full Text
- View/download PDF
11. Cost-effective sequence analysis of 113 genes in 1,192 probands with retinitis pigmentosa and Leber congenital amaurosis
- Author
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Panneman, Daan M., primary, Hitti-Malin, Rebekkah J., additional, Holtes, Lara K., additional, de Bruijn, Suzanne E., additional, Reurink, Janine, additional, Boonen, Erica G. M., additional, Khan, Muhammad Imran, additional, Ali, Manir, additional, Andréasson, Sten, additional, De Baere, Elfride, additional, Banfi, Sandro, additional, Bauwens, Miriam, additional, Ben-Yosef, Tamar, additional, Bocquet, Béatrice, additional, De Bruyne, Marieke, additional, Cerda, Berta de la, additional, Coppieters, Frauke, additional, Farinelli, Pietro, additional, Guignard, Thomas, additional, Inglehearn, Chris F., additional, Karali, Marianthi, additional, Kjellström, Ulrika, additional, Koenekoop, Robert, additional, de Koning, Bart, additional, Leroy, Bart P., additional, McKibbin, Martin, additional, Meunier, Isabelle, additional, Nikopoulos, Konstantinos, additional, Nishiguchi, Koji M., additional, Poulter, James A., additional, Rivolta, Carlo, additional, Rodríguez de la Rúa, Enrique, additional, Saunders, Patrick, additional, Simonelli, Francesca, additional, Tatour, Yasmin, additional, Testa, Francesco, additional, Thiadens, Alberta A. H. J., additional, Toomes, Carmel, additional, Tracewska, Anna M., additional, Tran, Hoai Viet, additional, Ushida, Hiroaki, additional, Vaclavik, Veronika, additional, Verhoeven, Virginie J. M., additional, van de Vorst, Maartje, additional, Gilissen, Christian, additional, Hoischen, Alexander, additional, Cremers, Frans P. M., additional, and Roosing, Susanne, additional
- Published
- 2023
- Full Text
- View/download PDF
12. Cost-effective sequence analysis of 113 genes in 1,192 probands with retinitis pigmentosa and Leber congenital amaurosis
- Author
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Panneman, Daan M., primary, Hitti-Malin, Rebekkah J., additional, Holtes, Lara K., additional, de Bruijn, Suzanne E., additional, Reurink, Janine, additional, Boonen, Erica G.M., additional, Khan, Muhammad Imran, additional, Ali, Manir, additional, Andréasson, Sten, additional, De Baere, Elfride, additional, Banfi, Sandro, additional, Bauwens, Miriam, additional, Ben-Yosef, Tamar, additional, Bocquet, Béatrice, additional, De Bruyne, Marieke, additional, de la Cerda, Berta, additional, Coppieters, Frauke, additional, Farinelli, Pietro, additional, Guignard, Thomas, additional, Inglehearn, Chris F., additional, Karali, Marianthi, additional, Kjellström, Ulrika, additional, Koenekoop, Robert, additional, de Koning, Bart, additional, Leroy, Bart P., additional, McKibbin, Martin, additional, Meunier, Isabelle, additional, Nikopoulos, Konstantinos, additional, Nishiguchi, Koji M., additional, Poulter, James A., additional, Rivolta, Carlo, additional, Rodríguez de la Rúa, Enrique, additional, Saunders, Patrick, additional, Simonelli, Francesca, additional, Tatour, Yasmin, additional, Testa, Francesco, additional, Thiadens, Alberta A.H.J., additional, Toomes, Carmel, additional, Tracewska, Anna M., additional, Viet Tran, Hoai, additional, Ushida, Hiroaki, additional, Vaclavik, Veronika, additional, Verhoeven, Virginie J.M., additional, van de Vorst, Maartje, additional, Gilissen, Christian, additional, Hoischen, Alexander, additional, Cremers, Frans P.M., additional, and Roosing, Susanne, additional
- Published
- 2022
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13. GTF3A mutations predispose to herpes simplex encephalitis by disrupting biogenesis of the host-derived RIG-I ligand RNA5SP141
- Author
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Naesens, Leslie, primary, Muppala, Santoshi, additional, Acharya, Dhiraj, additional, Nemegeer, Josephine, additional, Bogaert, Delfien, additional, Lee, Jung-Hyun, additional, Staes, Katrien, additional, Debacker, Veronique, additional, De Bleser, Pieter, additional, De Bruyne, Marieke, additional, De Baere, Elfride, additional, van Gent, Michiel, additional, Liu, GuanQun, additional, Lambrecht, Bart N., additional, Staal, Jens, additional, Kerre, Tessa, additional, Beyaert, Rudi, additional, Maelfait, Jonathan, additional, Tavernier, Simon J., additional, Gack, Michaela U., additional, and Haerynck, Filomeen, additional
- Published
- 2022
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14. A novel IKAROS haploinsufficiency kindred with unexpectedly late and variable B-cell maturation defects
- Author
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Bogaert, Delfien J., Kuehn, Hye Sun, Bonroy, Carolien, Calvo, Katherine R., Dehoorne, Joke, Vanlander, Arnaud V., De Bruyne, Marieke, Cytlak, Urszula, Bigley, Venetia, De Baets, Frans, De Baere, Elfride, Rosenzweig, Sergio D., Haerynck, Filomeen, and Dullaers, Melissa
- Published
- 2018
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15. High myopia and vitreal veils in a patient with Poretti– Boltshauser syndrome due to a novel homozygous LAMA1 mutation
- Author
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Faizi, Nawid, primary, Casteels, Ingele, additional, Termote, Bruno, additional, Coucke, Paul, additional, De Baere, Elfride, additional, De Bruyne, Marieke, additional, and Balikova, Irina, additional
- Published
- 2022
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16. Hidden Genetic Variation in LCA9-Associated Congenital Blindness Explained by 5′UTR Mutations and Copy-Number Variations of NMNAT1
- Author
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Coppieters, Frauke, Todeschini, Anne Laure, Fujimaki, Takuro, Baert, Annelot, De Bruyne, Marieke, Van Cauwenbergh, Caroline, Verdin, Hannah, Bauwens, Miriam, Ongenaert, Maté, Kondo, Mineo, Meire, Françoise, Murakami, Akira, Veitia, Reiner A., Leroy, Bart P., and De Baere, Elfride
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- 2015
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17. A Novel Non-Coding Variant in DCLRE1C Results in Deregulated Splicing and Induces SCID Through the Generation of a Truncated ARTEMIS Protein That Fails to Support V(D)J Recombination and DNA Damage Repair
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Strubbe, Steven, primary, De Bruyne, Marieke, additional, Pannicke, Ulrich, additional, Beyls, Elien, additional, Vandekerckhove, Bart, additional, Leclercq, Georges, additional, De Baere, Elfride, additional, Bordon, Victoria, additional, Vral, Anne, additional, Schwarz, Klaus, additional, Haerynck, Filomeen, additional, and Taghon, Tom, additional
- Published
- 2021
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18. ISOLATED MACULOPATHY AND MODERATE ROD–CONE DYSTROPHY REPRESENT THE MILDER END OF THE RDH12-RELATED RETINAL DYSTROPHY SPECTRUM
- Author
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De Zaeytijd, Julie, primary, Van Cauwenbergh, Caroline, additional, De Bruyne, Marieke, additional, Van Heetvelde, Mattias, additional, De Baere, Elfride, additional, Coppieters, Frauke, additional, and Leroy, Bart P., additional
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- 2021
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19. Long-Read Sequencing to Unravel Complex Structural Variants of CEP78 Leading to Cone-Rod Dystrophy and Hearing Loss
- Author
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Ascari, Giulia, Rendtorff, Nanna D., De Bruyne, Marieke, De Zaeytijd, Julie, Van Lint, Michel, Bauwens, Miriam, Van Heetvelde, Mattias, Arno, Gavin, Jacob, Julie, Creytens, David, Van Dorpe, Jo, Van Laethem, Thalia, Rosseel, Toon, De Pooter, Tim, De Rijk, Peter, De Coster, Wouter, Menten, Björn, Rey, Alfredo Dueñas, Strazisar, Mojca, Bertelsen, Mette, Tranebjaerg, Lisbeth, De Baere, Elfride, Ascari, Giulia, Rendtorff, Nanna D., De Bruyne, Marieke, De Zaeytijd, Julie, Van Lint, Michel, Bauwens, Miriam, Van Heetvelde, Mattias, Arno, Gavin, Jacob, Julie, Creytens, David, Van Dorpe, Jo, Van Laethem, Thalia, Rosseel, Toon, De Pooter, Tim, De Rijk, Peter, De Coster, Wouter, Menten, Björn, Rey, Alfredo Dueñas, Strazisar, Mojca, Bertelsen, Mette, Tranebjaerg, Lisbeth, and De Baere, Elfride
- Abstract
Inactivating variants as well as a missense variant in the centrosomal CEP78 gene have been identified in autosomal recessive cone-rod dystrophy with hearing loss (CRDHL), a rare syndromic inherited retinal disease distinct from Usher syndrome. Apart from this, a complex structural variant (SV) implicating CEP78 has been reported in CRDHL. Here we aimed to expand the genetic architecture of typical CRDHL by the identification of complex SVs of the CEP78 region and characterization of their underlying mechanisms. Approaches used for the identification of the SVs are shallow whole-genome sequencing (sWGS) combined with quantitative polymerase chain reaction (PCR) and long-range PCR, or ExomeDepth analysis on whole-exome sequencing (WES) data. Targeted or whole-genome nanopore long-read sequencing (LRS) was used to delineate breakpoint junctions at the nucleotide level. For all SVs cases, the effect of the SVs on CEP78 expression was assessed using quantitative PCR on patient-derived RNA. Apart from two novel canonical CEP78 splice variants and a frameshifting single-nucleotide variant (SNV), two SVs affecting CEP78 were identified in three unrelated individuals with CRDHL: a heterozygous total gene deletion of 235 kb and a partial gene deletion of 15 kb in a heterozygous and homozygous state, respectively. Assessment of the molecular consequences of the SVs on patient’s materials displayed a loss-of-function effect. Delineation and characterization of the 15-kb deletion using targeted LRS revealed the previously described complex CEP78 SV, suggestive of a recurrent genomic rearrangement. A founder haplotype was demonstrated for the latter SV in cases of Belgian and British origin, respectively. The novel 235-kb deletion was delineated using whole-genome LRS. Breakpoint analysis showed microhomology and pointed to a replication-based underlying mechanism. Moreover, data mining of bulk and single-cell human and mouse transcriptional datasets, together with CEP78 immu
- Published
- 2021
20. Longitudinal phenotypic study of late-onset retinal degeneration due to a founder variant c.562C>A p.(Pro188Thr) in theC1QTNF5gene
- Author
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De Zaeytijd, Julie, primary, Coppieters, Frauke, additional, De Bruyne, Marieke, additional, Van Royen, Jasper, additional, Roels, Dimitri, additional, Six, Rani, additional, Van Cauwenbergh, Caroline, additional, De Baere, Elfride, additional, and Leroy, Bart P., additional
- Published
- 2021
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21. Long-Read Sequencing to Unravel Complex Structural Variants of CEP78 Leading to Cone-Rod Dystrophy and Hearing Loss
- Author
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Ascari, Giulia, primary, Rendtorff, Nanna D., additional, De Bruyne, Marieke, additional, De Zaeytijd, Julie, additional, Van Lint, Michel, additional, Bauwens, Miriam, additional, Van Heetvelde, Mattias, additional, Arno, Gavin, additional, Jacob, Julie, additional, Creytens, David, additional, Van Dorpe, Jo, additional, Van Laethem, Thalia, additional, Rosseel, Toon, additional, De Pooter, Tim, additional, De Rijk, Peter, additional, De Coster, Wouter, additional, Menten, Björn, additional, Rey, Alfredo Dueñas, additional, Strazisar, Mojca, additional, Bertelsen, Mette, additional, Tranebjaerg, Lisbeth, additional, and De Baere, Elfride, additional
- Published
- 2021
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22. Case Report: Convalescent Plasma, a Targeted Therapy for Patients with CVID and Severe COVID-19
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Van Damme, Karel F. A., primary, Tavernier, Simon, additional, Van Roy, Nele, additional, De Leeuw, Elisabeth, additional, Declercq, Jozefien, additional, Bosteels, Cédric, additional, Maes, Bastiaan, additional, De Bruyne, Marieke, additional, Bogaert, Delfien, additional, Bosteels, Victor, additional, Hoste, Levi, additional, Naesens, Leslie, additional, Maes, Piet, additional, Grifoni, Alba, additional, Weiskopf, Daniela, additional, Sette, Alessandro, additional, Depuydt, Pieter, additional, Van Braeckel, Eva, additional, Haerynck, Filomeen, additional, and Lambrecht, Bart N., additional
- Published
- 2020
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23. Missing heritability in Bloom syndrome: First report of a deep intronic variant leading to pseudo‐exon activation in the BLM gene
- Author
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Backers, Lynn, primary, Parton, Bram, additional, De Bruyne, Marieke, additional, Tavernier, Simon J., additional, Van Den Bogaert, Kris, additional, Lambrecht, Bart N., additional, Haerynck, Filomeen, additional, and Claes, Kathleen B.M., additional
- Published
- 2020
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24. Correction: Dominant-negative mutations in human IL6ST underlie hyper-IgE syndrome
- Author
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Béziat, Vivien, primary, Tavernier, Simon J., additional, Chen, Yin-Huai, additional, Ma, Cindy S., additional, Materna, Marie, additional, Laurence, Arian, additional, Staal, Jens, additional, Aschenbrenner, Dominik, additional, Roels, Lisa, additional, Worley, Lisa, additional, Claes, Kathleen, additional, Gartner, Lisa, additional, Kohn, Lisa A., additional, De Bruyne, Marieke, additional, Schmitz-Abe, Klaus, additional, Charbonnier, Louis-Marie, additional, Keles, Sevgi, additional, Nammour, Justine, additional, Vladikine, Natasha, additional, Luxman Maglorius Renkilaraj, Majistor Raj, additional, Seeleuthner, Yoann, additional, Migaud, Mélanie, additional, Rosain, Jérémie, additional, Jeljeli, Mohamed, additional, Boisson, Bertrand, additional, Van Braeckel, Eva, additional, Rosenfeld, Jill A., additional, Dai, Hongzheng, additional, Burrage, Lindsay C., additional, Murdock, David R., additional, Lambrecht, Bart N., additional, Avettand-Fenoel, Véronique, additional, Vogel, Tiphanie P., additional, Network, Undiagnosed Diseases, additional, Esther, Charles R., additional, Haskologlu, Sule, additional, Dogu, Figen, additional, Ciznar, Peter, additional, Boutboul, David, additional, Ouachée-Chardin, Marie, additional, Amourette, Jean, additional, Lebras, Marie-Noëlle, additional, Gauvain, Clément, additional, Tcherakian, Colas, additional, Ikinciogullari, Aydan, additional, Beyaert, Rudi, additional, Abel, Laurent, additional, Milner, Joshua D., additional, Grimbacher, Bodo, additional, Couderc, Louis-Jean, additional, Butte, Manish J., additional, Freeman, Alexandra F., additional, Catherinot, Émilie, additional, Fieschi, Claire, additional, Chatila, Talal A., additional, Tangye, Stuart G., additional, Uhlig, Holm H., additional, Haerynck, Filomeen, additional, Casanova, Jean-Laurent, additional, and Puel, Anne, additional
- Published
- 2020
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25. A novel LPS-responsive beige-like anchor protein (LRBA) mutation presents with normal cytotoxic T lymphocyte-associated protein 4 (CTLA-4) and overactive TH17 immunity
- Author
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De Bruyne, Marieke, Bogaert, Delfien J., Venken, Koen, Van den Bossche, Lien, Bonroy, Carolien, Roels, Lisa, Tavernier, Simon J., van de Vijver, Els, Driessen, Ann, van Gijn, Marielle, Gámez-Diaz, Laura, Elewaut, Dirk, Grimbacher, Bodo, Haerynck, Filomeen, Moes, Nicolette, and Dullaers, Melissa
- Published
- 2018
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- View/download PDF
26. GATA2 deficiency and haematopoietic stem cell transplantation: challenges for the clinical practitioner
- Author
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Bogaert, Delfien J., primary, Laureys, Genevieve, additional, Naesens, Leslie, additional, Mazure, Dominiek, additional, De Bruyne, Marieke, additional, Hsu, Amy P., additional, Bordon, Victoria, additional, Wouters, Erik, additional, Tavernier, Simon J., additional, Lambrecht, Bart N., additional, De Baere, Elfride, additional, Haerynck, Filomeen, additional, and Kerre, Tessa, additional
- Published
- 2019
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- View/download PDF
27. A human immune dysregulation syndrome characterized by severe hyperinflammation with a homozygous nonsense Roquin-1 mutation
- Author
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Tavernier, Simon J, Athanasopoulos, Vicki, Verloo, Patrick, Behrens, Gesine, Staal, Jens, Bogaert, Delfien, Naesens, L, de Bruyne, Marieke, van Gassen, Sofie, Parthoens, Eef, Ellyard, Julia, Cappello, Jean, Morris, Lucy, van Gorp, Hanne, van Isterdael, Gert, Saeys, Y, Lamkanfi, Mohamed, Schelstraete, Petra, Dehoorne, Jo, Bordon, Victoria, Van Coster, Rudy, Lambrecht, Bart, Menten, Bjorn, Beyaert, Rudi, Vinuesa, Carola, Heissmeyer, Vigo, Dullaers, Melissa, Haerynck, Filomeen, Tavernier, Simon J, Athanasopoulos, Vicki, Verloo, Patrick, Behrens, Gesine, Staal, Jens, Bogaert, Delfien, Naesens, L, de Bruyne, Marieke, van Gassen, Sofie, Parthoens, Eef, Ellyard, Julia, Cappello, Jean, Morris, Lucy, van Gorp, Hanne, van Isterdael, Gert, Saeys, Y, Lamkanfi, Mohamed, Schelstraete, Petra, Dehoorne, Jo, Bordon, Victoria, Van Coster, Rudy, Lambrecht, Bart, Menten, Bjorn, Beyaert, Rudi, Vinuesa, Carola, Heissmeyer, Vigo, Dullaers, Melissa, and Haerynck, Filomeen
- Abstract
Hyperinflammatory syndromes are life-threatening disorders caused by overzealous immune cell activation and cytokine release, often resulting from defects in negative feedback mechanisms. In the quintessential hyperinflammatory syndrome familial hemophagocytic lymphohistiocytosis (HLH), inborn errors of cytotoxicity result in effector cell accumulation, immune dysregulation and, if untreated, tissue damage and death. Here, we describe a human case with a homozygous nonsense R688* RC3H1 mutation suffering from hyperinflammation, presenting as relapsing HLH. RC3H1 encodes Roquin-1, a posttranscriptional repressor of immune-regulatory proteins such as ICOS, OX40 and TNF. Comparing the R688* variant with the murine M199R variant reveals a phenotypic resemblance, both in immune cell activation, hypercytokinemia and disease development. Mechanistically, R688* Roquin-1 fails to localize to P-bodies and interact with the CCR4-NOT deadenylation complex, impeding mRNA decay and dysregulating cytokine production. The results from this unique case suggest that impaired Roquin-1 function provokes hyperinflammation by a failure to quench immune activation.
- Published
- 2019
28. Missing heritability in Bloom syndrome: First report of a deep intronic variant leading to pseudo‐exon activation in the BLM gene.
- Author
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Backers, Lynn, Parton, Bram, De Bruyne, Marieke, Tavernier, Simon J., Van Den Bogaert, Kris, Lambrecht, Bart N., Haerynck, Filomeen, and Claes, Kathleen B.M.
- Subjects
RECESSIVE genes ,SISTER chromatid exchange ,GENETIC regulation ,WESTERN immunoblotting ,EXOMES ,HERITABILITY ,MOLECULAR spectra - Abstract
Pathogenic biallelic variants in the BLM/RECQL3 gene cause a rare autosomal recessive disorder called Bloom syndrome (BS). This syndrome is characterized by severe growth delay, immunodeficiency, dermatological manifestations and a predisposition to a wide variety of cancers, often multiple and very early in life. Literature shows that the main mode of BLM inactivation is protein translation termination. We expanded the molecular spectrum of BS by reporting the first deep intronic variant causing intron exonisation. We describe a patient with a clinical phenotype of BS and a strong increase in sister chromatid exchanges (SCE), who was found to be compound heterozygous for a novel nonsense variant c.3379C>T, p.(Gln1127Ter) in exon 18 and a deep intronic variant c.3020‐258A>G in intron 15 of the BLM gene. The deep intronic variant creates a high‐quality de novo donor splice site, which leads to retention of two intron segments. Both pseudo‐exons introduce a premature stop codon into the reading frame and abolish BLM protein expression, confirmed by Western Blot analysis. These findings illustrate the role of non‐coding variation in Mendelian disorders and herewith highlight an unmet need in routine testing of Mendelian disorders, being the added value of RNA‐based approaches to provide a complete molecular diagnosis. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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- View/download PDF
29. Isolated and Syndromic Retinal Dystrophy Caused by Biallelic Mutations in RCBTB1, a Gene Implicated in Ubiquitination
- Author
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Coppieters, Frauke, Ascari, Giulia, Dannhausen, Katharina, Nikopoulos, Konstantinos, Peelman, Frank, Karlstetter, Marcus, Xu, Mingchu, Brachet, Cécile, Meunier, Isabelle, Tsilimbaris, Miltiadis K., Tsika, Chrysanthi, Blazaki, Styliani V., Vergult, Sarah, Farinelli, Pietro, Van Laethem, Thalia, Bauwens, Miriam, De Bruyne, Marieke, Chen, Rui, Langmann, Thomas, Sui, Ruifang, Meire, Françoise, Rivolta, Carlo, Hamel, Christian P., Leroy, Bart P., and De Baere, Elfride
- Published
- 2016
- Full Text
- View/download PDF
30. GATA2 deficiency and haematopoietic stem cell transplantation: challenges for the clinical practitioner.
- Author
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Bogaert, Delfien J., Laureys, Genevieve, Naesens, Leslie, Mazure, Dominiek, De Bruyne, Marieke, Hsu, Amy P., Bordon, Victoria, Wouters, Erik, Tavernier, Simon J., Lambrecht, Bart N., De Baere, Elfride, Haerynck, Filomeen, and Kerre, Tessa
- Subjects
STEM cell transplantation ,PEDIATRIC hematology ,GRAFT versus host disease ,STEM cell donors ,IMMUNOLOGICAL deficiency syndromes ,HEMATOPOIETIC stem cell transplantation - Abstract
Summary: GATA2 deficiency, first described in 2011, is a bone marrow failure disorder resulting in a complex haematological and immunodeficiency syndrome characterised by cytopenias, severe infections, myelodysplasia and leukaemia. The only curative treatment is allogeneic haematopoietic stem cell transplantation (HSCT). Although knowledge on this syndrome has greatly expanded, in clinical practice many challenges remain. In particular, guidelines on optimal donor and stem cell source and conditioning regimens regarding HSCT are lacking. Additionally, genetic analysis of GATA2 is technically cumbersome and could easily result in false‐negative results. With this report, we wish to raise awareness of these pitfalls amongst physicians dealing with haematological malignancies and primary immunodeficiencies. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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31. A CARD9 Founder Mutation Disrupts NF-κB Signaling by Inhibiting BCL10 and MALT1 Recruitment and Signalosome Formation
- Author
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De Bruyne, Marieke, primary, Hoste, Levi, additional, Bogaert, Delfien J., additional, Van den Bossche, Lien, additional, Tavernier, Simon J., additional, Parthoens, Eef, additional, Migaud, Mélanie, additional, Konopnicki, Deborah, additional, Yombi, Jean Cyr, additional, Lambrecht, Bart N., additional, van Daele, Sabine, additional, Alves de Medeiros, Ana Karina, additional, Brochez, Lieve, additional, Beyaert, Rudi, additional, De Baere, Elfride, additional, Puel, Anne, additional, Casanova, Jean-Laurent, additional, Goffard, Jean-Christophe, additional, Savvides, Savvas N., additional, Haerynck, Filomeen, additional, Staal, Jens, additional, and Dullaers, Melissa, additional
- Published
- 2018
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- View/download PDF
32. A CARD9 Founder Mutation Disrupts NF-κB Signaling by Inhibiting BCL10 and MALT1 Recruitment and Signalosome Formation
- Author
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De Bruyne, Marieke, Hoste, Levi, Bogaert, Delfien D.J., Van den Bossche, Lien, Tavernier, Simon S.J., Parthoens, Eef, Migaud, Mélanie, Konopnicki, Deborah, Yombi, Jean-Cyr, Lambrecht, Bart, Van Daele, Sabine, Alves de Medeiros, Ana Karina, Brochez, Lieve, Beyaert, Rudi, De Baere, Elfride, Puel, Anne, Casanova, Jean-Laurent, Goffard, Jean-Christophe, Savvides, Savvas S.N., Haerynck, Filomeen, Staal, Jens, Dullaers, Melissa, De Bruyne, Marieke, Hoste, Levi, Bogaert, Delfien D.J., Van den Bossche, Lien, Tavernier, Simon S.J., Parthoens, Eef, Migaud, Mélanie, Konopnicki, Deborah, Yombi, Jean-Cyr, Lambrecht, Bart, Van Daele, Sabine, Alves de Medeiros, Ana Karina, Brochez, Lieve, Beyaert, Rudi, De Baere, Elfride, Puel, Anne, Casanova, Jean-Laurent, Goffard, Jean-Christophe, Savvides, Savvas S.N., Haerynck, Filomeen, Staal, Jens, and Dullaers, Melissa
- Abstract
Background: Inherited CARD9 deficiency constitutes a primary immunodeficiency predisposing uniquely to chronic and invasive fungal infections. Certain mutations are shown to negatively impact CARD9 protein expression and/or NF-κB activation, but the underlying biochemical mechanism remains to be fully understood. Objectives: To investigate a possible founder origin of a known CARD9 R70W mutation in five families of Turkish origin. To explore the biochemical mechanism of immunodeficiency by R70W CARD9. Methods: We performed haplotype analysis using microsatellite markers and SNPs. We designed a model system exploiting a gain-of-function (GOF) CARD9 L213LI mutant that triggers constitutive NF-κB activation, analogous to an oncogenic CARD11 mutant, to study NF-κB signaling and signalosome formation. We performed reporter assays, immunoprecipitation and confocal imaging on HEK cells overexpressing different CARD9 variants. Results: We identified a common haplotype, thus providing evidence for a common Turkish founder. CARD9 R70W failed to activate NF-κB and abrogated NF-κB activation by WT CARD9 and by GOF CARD9. Notably, R70W CARD9 also exerted negative effects on NF-κB activation by CARD10, CARD11, and CARD14. Consistent with the NF-κB results, the R70W mutation prevented GOF CARD9 to pull down the signalosome partner proteins BCL10 and MALT1. This reflected into drastic reduction of BCL10 filamentous assemblies in a cellular context. Indeed, structural analysis revealed that position R70 in CARD9 maps at the putative interface between successive CARD domains in CARD9 filaments. Conclusions: The R70W mutation in CARD9 prevents NF-κB activation by inhibiting productive interactions with downstream BCL10 and MALT1, necessary for assembly of the filamentous CARD9-BCL10-MALT1 signalosome., SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 2018
33. When One Rare Disease Hides Another: Kartagener Syndrome Masking FMF
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Hoste, Levi, primary, De Baets, Frans, additional, Van Daele, Sabine, additional, Schelstraete, Petra, additional, Boon, Mieke, additional, De Bruyne, Marieke, additional, Dullaers, Melissa, additional, Coppieters, Frauke, additional, and Haerynck, Filomeen, additional
- Published
- 2017
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- View/download PDF
34. CARD9 p.R70W, a Turkish founder mutation associated with mucosal and invasive fungal infections, disrupts downstream NF-kB signaling by inhibiting Bcl10 recruitment
- Author
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De Bruyne, Marieke, primary
- Published
- 2017
- Full Text
- View/download PDF
35. Early-onset primary antibody deficiency resembling common variable immunodeficiency challenges the diagnosis of Wiedeman-Steiner and Roifman syndromes
- Author
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Bogaert, Delfien J., primary, Dullaers, Melissa, additional, Kuehn, Hye Sun, additional, Leroy, Bart P., additional, Niemela, Julie E., additional, De Wilde, Hans, additional, De Schryver, Sarah, additional, De Bruyne, Marieke, additional, Coppieters, Frauke, additional, Lambrecht, Bart N., additional, De Baets, Frans, additional, Rosenzweig, Sergio D., additional, De Baere, Elfride, additional, and Haerynck, Filomeen, additional
- Published
- 2017
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- View/download PDF
36. The immunophenotypic fingerprint of patients with primary antibody deficiencies is partially present in their asymptomatic first-degree relatives
- Author
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Bogaert, Delfien J.A., primary, De Bruyne, Marieke, additional, Debacker, Veronique, additional, Depuydt, Pauline, additional, De Preter, Katleen, additional, Bonroy, Carolien, additional, Philippé, Jan, additional, Bordon, Victoria, additional, Lambrecht, Bart N., additional, Kerre, Tessa, additional, Cerutti, Andrea, additional, Vermaelen, Karim Y., additional, Haerynck, Filomeen, additional, and Dullaers, Melissa, additional
- Published
- 2016
- Full Text
- View/download PDF
37. When One Rare Disease Hides Another: Kartagener Syndrome Masking FMF.
- Author
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Hoste, Levi, De Baets, Frans, Van Daele, Sabine, Schelstraete, Petra, Boon, Mieke, De Bruyne, Marieke, Dullaers, Melissa, Coppieters, Frauke, and Haerynck, Filomeen
- Subjects
GENETIC disorder diagnosis ,INFLAMMATION ,CELL physiology ,CONSANGUINITY ,DIFFERENTIAL diagnosis ,GENEALOGY ,GENETIC disorders ,GENETIC techniques ,PEDIATRICS ,CILIARY motility disorders ,DIAGNOSIS - Abstract
The article presents a case study of a 16-year-old boy with recurrent episodes of fever, without any respiratory problems but with concomitant abdominal and sometimes thoracic pain and arthralgia. It mentions that genetic evaluation was performed to identify the molecular cause of Primary ciliary dyskinesia (PCD) as well as Familial Mediterranean fever (FMF). It informs that the patient was treated with colchicine.
- Published
- 2018
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- View/download PDF
38. Cost-effective sequence analysis of 113 genes in 1,192 probands with retinitis pigmentosa and Leber congenital amaurosis
- Author
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Daan M. Panneman, Rebekkah J. Hitti-Malin, Lara K. Holtes, Suzanne E. de Bruijn, Janine Reurink, Erica G.M. Boonen, Muhammad Imran Khan, Manir Ali, Sten Andréasson, Elfride De Baere, Sandro Banfi, Miriam Bauwens, Tamar Ben-Yosef, Béatrice Bocquet, Marieke De Bruyne, Berta de la Cerda, Frauke Coppieters, Pietro Farinelli, Thomas Guignard, Chris F. Inglehearn, Marianthi Karali, Ulrika Kjellström, Robert Koenekoop, Bart de Koning, Bart P. Leroy, Martin McKibbin, Isabelle Meunier, Konstantinos Nikopoulos, Koji M. Nishiguchi, James A. Poulter, Carlo Rivolta, Enrique Rodríguez de la Rúa, Patrick Saunders, Francesca Simonelli, Yasmin Tatour, Francesco Testa, Alberta A.H.J. Thiadens, Carmel Toomes, Anna M. Tracewska, Hoai Viet Tran, Hiroaki Ushida, Veronika Vaclavik, Virginie J.M. Verhoeven, Maartje van de Vorst, Christian Gilissen, Alexander Hoischen, Frans P.M. Cremers, Susanne Roosing, MUMC+: DA KG Lab Informatica en BIO (9), RS: FHML non-thematic output, Panneman, Daan M., Hitti-Malin, Rebekkah J., Holtes, Lara K., de Bruijn, Suzanne E., Reurink, Janine, Boonen, Erica G. M., Khan, Muhammad Imran, Ali, Manir, Andréasson, Sten, De Baere, Elfride, Banfi, Sandro, Bauwens, Miriam, Ben-Yosef, Tamar, Bocquet, Béatrice, De Bruyne, Marieke, Cerda, Berta de la, Coppieters, Frauke, Farinelli, Pietro, Guignard, Thoma, Inglehearn, Chris F., Karali, Marianthi, Kjellström, Ulrika, Koenekoop, Robert, de Koning, Bart, Leroy, Bart P., Mckibbin, Martin, Meunier, Isabelle, Nikopoulos, Konstantino, Nishiguchi, Koji M., Poulter, James A., Rivolta, Carlo, Rodríguez de la Rúa, Enrique, Saunders, Patrick, Simonelli, Francesca, Tatour, Yasmin, Testa, Francesco, Thiadens, Alberta A. H. J., Toomes, Carmel, Tracewska, Anna M., Tran, Hoai Viet, Ushida, Hiroaki, Vaclavik, Veronika, Verhoeven, Virginie J. M., van de Vorst, Maartje, Gilissen, Christian, Hoischen, Alexander, Cremers, Frans P. M., and Roosing, Susanne
- Subjects
Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,targeted gene sequencing ,MUTATIONS ,cost-effective ,inherited retinal diseases ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,Biology and Life Sciences ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Cell Biology ,VARIANTS ,RETINAL DYSTROPHY ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,All institutes and research themes of the Radboud University Medical Center ,smMIPs ,high-throughput ,Developmental Biology - Abstract
Introduction: Retinitis pigmentosa (RP) and Leber congenital amaurosis (LCA) are two groups of inherited retinal diseases (IRDs) where the rod photoreceptors degenerate followed by the cone photoreceptors of the retina. A genetic diagnosis for IRDs is challenging since >280 genes are associated with these conditions. While whole exome sequencing (WES) is commonly used by diagnostic facilities, the costs and required infrastructure prevent its global applicability. Previous studies have shown the cost-effectiveness of sequence analysis using single molecule Molecular Inversion Probes (smMIPs) in a cohort of patients diagnosed with Stargardt disease and other maculopathies.Methods: Here, we introduce a smMIPs panel that targets the exons and splice sites of all currently known genes associated with RP and LCA, the entire RPE65 gene, known causative deep-intronic variants leading to pseudo-exons, and part of the RP17 region associated with autosomal dominant RP, by using a total of 16,812 smMIPs. The RP-LCA smMIPs panel was used to screen 1,192 probands from an international cohort of predominantly RP and LCA cases.Results and discussion: After genetic analysis, a diagnostic yield of 56% was obtained which is on par with results from WES analysis. The effectiveness and the reduced costs compared to WES renders the RP-LCA smMIPs panel a competitive approach to provide IRD patients with a genetic diagnosis, especially in countries with restricted access to genetic testing.
- Published
- 2023
39. Investigating Chromosomal Radiosensitivity in Inborn Errors of Immunity: Insights from DNA Repair Disorders and Beyond.
- Author
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Beyls E, Duthoo E, Backers L, Claes K, De Bruyne M, Pottie L, Bordon V, Bonroy C, Tavernier SJ, Claes KBM, Vral A, Baeyens A, and Haerynck F
- Subjects
- Humans, Male, Female, Child, Adolescent, Child, Preschool, Adult, Infant, Young Adult, DNA Repair-Deficiency Disorders genetics, Middle Aged, Micronucleus Tests, Ataxia Telangiectasia genetics, Ataxia Telangiectasia immunology, Ataxia Telangiectasia diagnosis, Radiation Tolerance genetics, DNA Repair genetics
- Abstract
Human inborn errors of immunity (IEI) represent a diverse group of genetic disorders affecting the innate and/or adaptive immune system. Some IEI entities comprise defects in DNA repair factors, resulting in (severe) combined immunodeficiencies, bone marrow failure, predisposition to malignancies, and potentially resulting in radiosensitivity (RS). While other IEI subcategories such as common variable immunodeficiency (CVID) and immune dysregulation disorders also associate with lymphoproliferative and malignant complications, the occurrence of RS phenotypes in the broader IEI population is not well characterized. Nonetheless, identifying RS in IEI patients through functional testing is crucial to reconsider radiation-related therapeutic protocols and to improve overall patient management. This study aimed to investigate chromosomal RS in a diverse cohort of 107 IEI patients using the G0 cytokinesis-block micronucleus (MN) assay. Our findings indicate significant variability in RS across specific genetic and phenotypical subgroups. Severe RS was detected in all ataxia-telangiectasia (AT) patients, a FANCI deficient and ERCC6L2 deficient patient, but not in any other IEI patient included in this cohort. Age emerged as an influencing factor for both spontaneous and radiation-induced MN yields, while the manifestation of additional clinical features, including infection susceptibility, immune dysregulation, or malignancies did not associate with increased MN levels. Our extensive analysis of RS in the IEI population underscores the clinical importance of RS assessment in AT patients and supports RS testing in all IEI patients suspected of having a DNA repair disorder associated with RS., Competing Interests: Declarations. Ethics Approval: This study was reviewed and approved by the Ethics Committee of the Ghent University Hospital (reference no. 2012/593, 2019/0461 and 2019/1565). Written informed consent was obtained from all participants in this study, in accordance with the 1975 Helsinki Declaration. Conflicts of Interest: The authors declare no competing interests., (© 2025. The Author(s).)
- Published
- 2025
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40. The immunophenotypic fingerprint of patients with primary antibody deficiencies is partially present in their asymptomatic first-degree relatives.
- Author
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Bogaert DJ, De Bruyne M, Debacker V, Depuydt P, De Preter K, Bonroy C, Philippé J, Bordon V, Lambrecht BN, Kerre T, Cerutti A, Vermaelen KY, Haerynck F, and Dullaers M
- Subjects
- Adolescent, Adult, Agammaglobulinemia blood, Aged, Aged, 80 and over, B-Lymphocyte Subsets immunology, B-Lymphocyte Subsets metabolism, Biomarkers, Case-Control Studies, Child, Child, Preschool, Cluster Analysis, Common Variable Immunodeficiency blood, Dendritic Cells immunology, Dendritic Cells metabolism, Female, Humans, IgG Deficiency blood, Immunoglobulins blood, Male, Middle Aged, Phenotype, T-Lymphocyte Subsets immunology, T-Lymphocyte Subsets metabolism, Young Adult, Agammaglobulinemia diagnosis, Asymptomatic Diseases, Common Variable Immunodeficiency diagnosis, Family, IgG Deficiency diagnosis, Immunophenotyping methods
- Abstract
The etiology of primary antibody deficiencies is largely unknown. Beside rare monogenic forms, the majority of cases seem to have a more complex genetic basis. Whereas common variable immunodeficiency has been investigated in depth, there are only a few reports on milder primary antibody deficiencies such as idiopathic primary hypogammaglobulinemia and IgG subclass deficiency. We performed flow cytometric immunophenotyping in 33 patients with common variable immunodeficiency, 23 with idiopathic primary hypogammaglobulinemia and 21 with IgG subclass deficiency, as well as in 47 asymptomatic first-degree family members of patients and 101 unrelated healthy controls. All three groups of patients showed decreased memory B- and naïve T-cell subsets and decreased B-cell activating factor receptor expression. In contrast, circulating follicular helper T-cell frequency and expression of inducible T-cell co-stimulator and chemokine receptors were only significantly altered in patients with common variable immunodeficiency. Asymptomatic first-degree family members of patients demonstrated similar, albeit intermediate, alterations in naïve and memory B- and T-cell subsets. About 13% of asymptomatic relatives had an abnormal peripheral B-cell composition. Furthermore, asymptomatic relatives showed decreased levels of CD4
+ recent thymic emigrants and increased central memory T cells. Serum IgG and IgM levels were also significantly lower in asymptomatic relatives than in healthy controls. We conclude that, in our cohort, the immunophenotypic landscape of primary antibody deficiencies comprises a spectrum, in which some alterations are shared between all primary antibody deficiencies whereas others are only associated with common variable immunodeficiency. Importantly, asymptomatic first-degree family members of patients were found to have an intermediate phenotype for peripheral B- and T-cell subsets., (Copyright© Ferrata Storti Foundation.)- Published
- 2017
- Full Text
- View/download PDF
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