Kimberly Mae C. Ong, Teresa Luisa I Gloria-Cruz, Wasyl Szeremeta, Jeanne B. Benoit, Jeremy D. Prager, Allen F. Ryan, Petri S. Mattila, Melissa A. Scholes, Patricia J. Yoon, Saira Yousaf, Patrick John Labra, Todd Wine, Tori Bootpetch Roberts, Rehan S. Shaikh, Edward So, Christopher Greenlee, Sven-Olrik Streubel, Stephen P. Cass, Rachelle Marie A. Nonato, Generoso T. Abes, Rhodieleen Anne R. de la Cruz, Karen L. Mohlke, Suzanne M. Leal, Maria Rina T. Reyes-Quintos, Michèle M. Sale, Ivana V. Yang, Deborah A. Nickerson, Jordyn Dinwiddie, Lena Hafrén, Saima Riazuddin, Jonathan Cardwell, Nanette R. Lee, Eva Maria Cutiongco-de la Paz, Kathleen Daly, Charles E. Robertson, Harold S. Pine, Zubair M. Ahmed, Samuel P. Gubbels, Regie Lyn P. Santos-Cortez, Tasnee Chonmaitree, Abner L. Chan, David A. Schwartz, Herman A. Jenkins, Kenny H. Chan, Dylan Ray, Elisabet Einarsdottir, Juha Kere, Sheryl Mae Lagrana-Villagracia, Charlotte M. Chiong, Ayesha Yousaf, Norman R. Friedman, Ma. Leah C. Tantoco, Talitha Karisse L. Yarza, Michael J. Bamshad, Melquiadesa Pedro, Erasmo Gonzalo D V Llanes, Matthew J. Steritz, Amanda G. Ruiz, Arnaud P. J. Giese, Daniel N. Frank, Päivi Marjaana Saavalainen / Principal Investigator, Research Programme for Molecular Neurology, Research Programs Unit, University of Helsinki, Juha Kere / Principal Investigator, Korva-, nenä- ja kurkkutautien klinikka, Clinicum, and HUS Head and Neck Center
Non-secretor status due tohomozygosity for the commonFUT2 variant c. 461G> A(p. Trp154*) is associated witheither risk for autoimmune diseases or protection against viral diarrhea and HIV. We determined the role of FUT2 in otitis media susceptibility by obtaining DNA samples from 609 multi-ethnic families and simplex case subjectswith otitis media. Exome and Sanger sequencing, linkage analysis, and Fisher exact and transmission disequilibrium tests (TDT) were performed. The common FUT2 c. 604C> T (p. Arg202*) variant co-segregates with otitismedia in a Filipino pedigree (LOD = 4.0). Additionally, a rare variant, c. 412C> T (p. Arg138Cys), is associated with recurrent/ chronic otitismedia in European-American children (p = 1.2310(-5)) and US trios (TDT p = 0.01). The c. 461G> A (p. Trp154*) variant was also overtransmitted in US trios (TDT p = 0.01) and was associated with shifts inmiddle ear microbiota composition (PERMANOVA p 20 were combined, FUT2 variantswere over-transmitted in trios (TDTp = 0.001). Fut2 is transiently upregulated inmouse middle ear after inoculation withnon-typeable Haemophilus influenzae. Four FUT2 variants-namely p. Ala104Val, p. Arg138Cys, p. Trp154*, and p. Arg202*-reduced A antigen in mutant-transfected COS-7 cells, while the nonsense variants also reduced FUT2 protein levels. Common and rare FUT2 variants confer susceptibility to otitis media, likely by modifying the middle ear microbiome through regulation of A antigen levels in epithelial cells. Our familiesdemonstratemarked intra-familial genetic heterogeneity, suggesting thatmultiple combinations of common and rare variants plus environmental factors influence the individual otitis media phenotype as a complex trait.