36 results on '"Herzberg, O"'
Search Results
2. BB0238 from Borrelia burgdorferi
- Author
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Brangulis, K., primary, Foor, S.D., additional, Shakya, A.K., additional, Rana, V.S., additional, Bista, S., additional, Kitsou, C., additional, Ronzetti, M., additional, Linden, S.B., additional, Altieri, A.S., additional, Akopjana, I., additional, Baljinnyam, B., additional, Nelson, D.C., additional, Simeonov, A., additional, Herzberg, O., additional, Caimano, M.J., additional, and Pal, U., additional
- Published
- 2023
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- View/download PDF
3. BB0238 from Borrelia burgdorferi, Se-Met data for Leu240Met mutant
- Author
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Brangulis, K., primary, Foor, S.D., additional, Shakya, A.K., additional, Rana, V.S., additional, Bista, S., additional, Kitsou, C., additional, Ronzetti, M., additional, Linden, S.B., additional, Altieri, A.S., additional, Akopjana, I., additional, Baljinnyam, B., additional, Nelson, D.C., additional, Simeonov, A., additional, Herzberg, O., additional, Caimano, M.J., additional, and Pal, U., additional
- Published
- 2023
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4. Tailspike protein 4 (TSP4) from phage CBA120, residues 1-335, obtained in the presence of NaK-Tartrate
- Author
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Chao, K., primary, Shang, X., additional, Grenfield, J., additional, Linden, S.B., additional, Nelson, D.C., additional, and Herzberg, O., additional
- Published
- 2022
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- View/download PDF
5. Tailspike protein 4 (TSP4) from phage CBA120, residues 1-250, obtained in the presence of PEG8000
- Author
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Chao, K., primary, Shang, X., additional, Grenfield, J., additional, Linden, S.B., additional, Nelson, D.C., additional, and Herzberg, O., additional
- Published
- 2022
- Full Text
- View/download PDF
6. SeMet Tailspike protein 4 (TSP4) phage CBA120, residues 1-335, obtained in the presence of LiSO4
- Author
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Chao, K., primary, Shang, X., additional, Grenfield, J., additional, Linden, S.B., additional, Nelson, D.C., additional, and Herzberg, O., additional
- Published
- 2022
- Full Text
- View/download PDF
7. Crystal structure of full-length tailspike protein 2 (TSP2, ORF211) ) from Escherichia coli O157:H7 bacteriophage CAB120
- Author
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Greenfield, J., primary and Herzberg, O., additional
- Published
- 2021
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8. CRYSTAL STRUCTURE OF A TAILSPIKE PROTEIN 3 (TSP3, ORF212) FROM ESCHERICHIA COLI O157:H7 BACTERIOPHAGE CBA120
- Author
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Greenfield, J.Y., primary and Herzberg, O., additional
- Published
- 2019
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9. Texture-modified foods and thickened fluids used in dysphagia: Israeli standardised terminology and definitions
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Icht, M., primary, Bergerzon-Bitton, O., additional, Kachal, J., additional, Goldsmith, R., additional, Herzberg, O., additional, and Endevelt, R., additional
- Published
- 2018
- Full Text
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10. Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016)
- Author
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Kryshtafovych, A, Albrecht, R, Baslé, A, Bule, P, Caputo, A, Carvalho, A, Chao, K, Diskin, R, Fidelis, K, Fontes, C, Fredslund, F, Gilbert, H, Goulding, C, Hartmann, M, Hayes, C, Herzberg, O, Hill, J, Joachimiak, A, Kohring, G, Koning, R, Lo Leggio, L, Mangiagalli, M, Michalska, K, Moult, J, Najmudin, S, Nardini, M, Nardone, V, Ndeh, D, Nguyen, T, Pintacuda, G, Postel, S, Van Raaij, M, Roversi, P, Shimon, A, Singh, A, Sundberg, E, Tars, K, Zitzmann, N, Schwede, T, Kryshtafovych, A, Albrecht, R, Baslé, A, Bule, P, Caputo, A, Carvalho, A, Chao, K, Diskin, R, Fidelis, K, Fontes, C, Fredslund, F, Gilbert, H, Goulding, C, Hartmann, M, Hayes, C, Herzberg, O, Hill, J, Joachimiak, A, Kohring, G, Koning, R, Lo Leggio, L, Mangiagalli, M, Michalska, K, Moult, J, Najmudin, S, Nardini, M, Nardone, V, Ndeh, D, Nguyen, T, Pintacuda, G, Postel, S, Van Raaij, M, Roversi, P, Shimon, A, Singh, A, Sundberg, E, Tars, K, Zitzmann, N, and Schwede, T
- Abstract
The functional and biological significance of the selected CASP12 targets are described by the authors of the structures. The crystallographers discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP12 experiment
- Published
- 2018
11. Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Ser306 fused to maltose binding protein
- Author
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Chao, L.K., primary and Herzberg, O., additional
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- 2017
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12. Gasdermin-B C-terminal domain containing the polymorphism residues Arg299:Ser306 fused to maltose binding protein
- Author
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Chao, K., primary and Herzberg, O., additional
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- 2017
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13. Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016)
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Shabir Najmudin, Johan C. Hill, Guido Pintacuda, Kinlin L. Chao, John Moult, Arnaud Baslé, T.H. Nguyen, Kaspars Tars, Harry J. Gilbert, Krzysztof Fidelis, Christopher S. Hayes, Marco Nardini, Reinhard Albrecht, Mark J. van Raaij, Valentina Nardone, Roman I. Koning, Celia W. Goulding, Pedro Bule, A.K. Singh, Nicole Zitzmann, Andrzej Joachimiak, Osnat Herzberg, Leila Lo Leggio, Carlos M. G. A. Fontes, Eric J. Sundberg, Pietro Roversi, Didier Ndeh, Andriy Kryshtafovych, Amir Shimon, Gert Wieland Kohring, Folmer Fredslund, Alessandro T. Caputo, Ana Luísa Carvalho, Marco Mangiagalli, Karolina Michalska, Sandra Postel, Marcus D. Hartmann, Torsten Schwede, Ron Diskin, Genome Center [UC Davis], University of California [Davis] (UC Davis), University of California-University of California, Abteilung Membranbiochemie [Martinsried], Max-Planck-Institut für Biochemie (MPIB), Max-Planck-Gesellschaft-Max-Planck-Gesellschaft, Institute for Cell and Molecular Biosciences, Newcastle University [Newcastle], Interdisciplinary Centre of Research in Animal Health, Faculdade de Medicina Veterinária, Pólo Universitário do Alto da Ajuda, Universidade de Lisboa, Oxford Glycobiol Inst, Dept Biochem, University of Oxford [Oxford], Unidade de Ciencias Biomoleculares Aplicadas (UCIBIO), Requimte, Departamento de Química (DQ), Faculdade de Ciências e Tecnologia = School of Science & Technology (FCT NOVA), Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Faculdade de Ciências e Tecnologia = School of Science & Technology (FCT NOVA), Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade do Porto-Departamento de Química (DQ), Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade do Porto, Dept Mol Cellular & Dev Biol, University of California [Santa Barbara] (UCSB), Structural Biology Center, Biosciences Division, Universität des Saarlandes [Saarbrücken], Department of Chemistry, University of Copenhagenn, Department of Cell Biology and Molecular Genetics, University of Maryland [College Park], University of Maryland System-University of Maryland System, Department of Biomolecular Sciences and Biotechnology, University of Milano, Biological Solid-State NMR Methods - Méthodes de RMN à l'état solide en biologie, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Biomedical Research & Study Centre, Department of Biochemistry [Oxford], Biozentrum [Basel, Suisse], University of Basel (Unibas), Kryshtafovych, A, Albrecht, R, Baslé, A, Bule, P, Caputo, A, Carvalho, A, Chao, K, Diskin, R, Fidelis, K, Fontes, C, Fredslund, F, Gilbert, H, Goulding, C, Hartmann, M, Hayes, C, Herzberg, O, Hill, J, Joachimiak, A, Kohring, G, Koning, R, Lo Leggio, L, Mangiagalli, M, Michalska, K, Moult, J, Najmudin, S, Nardini, M, Nardone, V, Ndeh, D, Nguyen, T, Pintacuda, G, Postel, S, Van Raaij, M, Roversi, P, Shimon, A, Singh, A, Sundberg, E, Tars, K, Zitzmann, N, and Schwede, T
- Subjects
0301 basic medicine ,Models, Molecular ,Protein Folding ,Protein Conformation ,Bioinformatics ,FIS/07 - FISICA APPLICATA (A BENI CULTURALI, AMBIENTALI, BIOLOGIA E MEDICINA) ,Computational biology ,computer.software_genre ,Crystallography, X-Ray ,Biochemistry ,Article ,Mathematical Sciences ,03 medical and health sciences ,Structural Biology ,Models ,Information and Computing Sciences ,[CHIM]Chemical Sciences ,Animals ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,CASP ,Molecular Biology ,X-ray crystallography ,Physics ,Crystallography ,Bacteria ,Proteins ,Computational Biology ,Molecular ,Protein structure prediction ,Biological Sciences ,BIO/10 - BIOCHIMICA ,NMR ,protein structure prediction ,030104 developmental biology ,Biological significance ,X-Ray ,Data mining ,computer ,Software - Abstract
International audience; The functional and biological significance of the selected CASP12 targets are described by the authors of the structures. The crystallographers discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP12 experiment.
- Published
- 2018
- Full Text
- View/download PDF
14. Borrelial phosphomannose isomerase as a cell surface localized protein that retains enzymatic activity and promotes host-pathogen interaction.
- Author
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Dutta S, Rana VS, Backstedt BT, Shakya AK, Kitsou C, Yas OB, Smith AA, Ronzetti MH, Lipman RM, Araujo-Aris S, Yang X, Rai G, Lin Y-P, Herzberg O, and Pal U
- Abstract
All organisms produce an intracellular Zn
2+ -dependent enzyme, phosphomannose isomerase (PMI) or mannose-6 phosphate isomerase, that catalyzes the reversible conversion of mannose-6-phosphate and fructose-6-phosphate during sugar metabolism and polysaccharide biosynthesis. Unexpectedly, we discovered an additional PMI function in Borrelia burgdorferi , the pathogen of Lyme disease, where the enzyme is localized on the cell surface and binds to collagen IV-a host extracellular matrix component predominantly found in the skin. The AlphaFold 3-based structural model of B. burgdorferi PMI (BbPMI) retains the active site with tetrahedrally-coordinated Zn2+ seen in other PMIs of known structure, residing in an elongated crevice. Ligand docking shows that the crevice can accommodate the tip trisaccharide moiety of a glycosylated asparagine residue on the collagen IV 7S domain. Low doses of a well-known PMI benzoisothiazolone inhibitor impair the growth of diverse strains of B. burgdorferi in culture, but not other tested Gram-negative or Gram-positive pathogens. Borrelia cells are even more susceptible to several other structurally related benzoisothiazolone analogs. The passive transfer of anti-BbPMI antibodies in ticks can impact spirochete transmission to mice, while the treatment of collagen IV-containing murine skin with PMI inhibitors impairs spirochete infectivity. Taken together, these results highlight a newly discovered role for BbPMI in mediating host-pathogen interactions during the spirochete infectivity process. In turn, this discovery offers an opportunity for the development of a novel therapeutic strategy to combat Lyme disease by preventing the BbPMI interaction with its host receptor, collagen IV., Importance: All organisms produce an intracellular enzyme, phosphomannose isomerase (PMI), that converts specific sugars during metabolism. Unexpectedly, we discovered an additional PMI function in Borrelia burgdorferi , the Lyme disease pathogen, where the enzyme is localized on the cell surface and binds to collagen IV-a host extracellular molecule mainly found in the skin. Low doses of PMI chemical inhibitors impair the growth of diverse strains of B. burgdorferi in culture, but not other tested bacterial pathogens. The passive transfer of anti-BbPMI antibodies in ticks can impact B. burgdorferi transmission to mice, while the treatment of collagen IV-containing murine skin with PMI inhibitors impairs infectivity. Taken together, these results highlight a newly discovered role for BbPMI in mediating host-pathogen interactions during infection. In turn, this discovery offers an opportunity for the development of a novel therapeutic strategy to combat Lyme disease by preventing BbPMI function and interaction with host collagen IV.- Published
- 2025
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15. Comparing apples to manzanas and oranges to naranjas: A new measure of English-Spanish vocabulary for dual language learners.
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Tamis-LeMonda CS, Kachergis G, Masek LR, Gonzalez SL, Soska KC, Herzberg O, Xu M, Adolph KE, Gilmore RO, Bornstein MH, Casasola M, Fausey CM, Frank MC, Goldin-Meadow S, Gros-Louis J, Hirsh-Pasek K, Iverson J, Lew-Williams C, MacWhinney B, Marchman VA, Naigles L, Namy L, Perry LK, Rowe M, Sheya A, Soderstrom M, Song L, Walle E, Warlaumont AS, Yoshida H, Yu C, and Yurovsky D
- Subjects
- Child, Infant, Humans, Female, Vocabulary, Child Language, Language Tests, Language, Malus, Citrus sinensis, Multilingualism
- Abstract
The valid assessment of vocabulary development in dual-language-learning infants is critical to developmental science. We developed the Dual Language Learners English-Spanish (DLL-ES) Inventories to measure vocabularies of U.S. English-Spanish DLLs. The inventories provide translation equivalents for all Spanish and English items on Communicative Development Inventory (CDI) short forms; extended inventories based on CDI long forms; and Spanish language-variety options. Item-Response Theory analyses applied to Wordbank and Web-CDI data (n = 2603, 12-18 months; n = 6722, 16-36 months; half female; 1% Asian, 3% Black, 2% Hispanic, 30% White, 64% unknown) showed near-perfect associations between DLL-ES and CDI long-form scores. Interviews with 10 Hispanic mothers of 18- to 24-month-olds (2 White, 1 Black, 7 multi-racial; 6 female) provide a proof of concept for the value of the DLL-ES for assessing the vocabularies of DLLs., (© 2024 International Congress of Infant Studies.)
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- 2024
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16. A unique borrelial protein facilitates microbial immune evasion.
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Foor SD, Brangulis K, Shakya AK, Rana VS, Bista S, Kitsou C, Ronzetti M, Alreja AB, Linden SB, Altieri AS, Baljinnyam B, Akopjana I, Nelson DC, Simeonov A, Herzberg O, Caimano MJ, and Pal U
- Subjects
- Animals, Humans, Mice, Immune Evasion, Borrelia, Lyme Disease microbiology, Borrelia burgdorferi metabolism, Ticks microbiology, Ixodes microbiology
- Abstract
Importance: Lyme disease is a major tick-borne infection caused by a bacterial pathogen called Borrelia burgdorferi , which is transmitted by ticks and affects hundreds of thousands of people every year. These bacterial pathogens are distinct from other genera of microbes because of their distinct features and ability to transmit a multi-system infection to a range of vertebrates, including humans. Progress in understanding the infection biology of Lyme disease, and thus advancements towards its prevention, are hindered by an incomplete understanding of the microbiology of B. burgdorferi , partly due to the occurrence of many unique borrelial proteins that are structurally unrelated to proteins of known functions yet are indispensable for pathogen survival. We herein report the use of diverse technologies to examine the structure and function of a unique B. burgdorferi protein, annotated as BB0238-an essential virulence determinant. We show that the protein is structurally organized into two distinct domains, is involved in multiplex protein-protein interactions, and facilitates tick-to-mouse pathogen transmission by aiding microbial evasion of early host cellular immunity. We believe that our findings will further enrich our understanding of the microbiology of B. burgdorferi, potentially impacting the future development of novel prevention strategies against a widespread tick-transmitted infection., Competing Interests: The authors declare no conflict of interest.
- Published
- 2023
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17. More than just pattern recognition: Prediction of uncommon protein structure features by AI methods.
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Herzberg O and Moult J
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- Amino Acid Sequence, Protein Structure, Secondary, Neural Networks, Computer, Protein Conformation, Artificial Intelligence, Proteins chemistry
- Abstract
The CASP14 experiment demonstrated the extraordinary structure modeling capabilities of artificial intelligence (AI) methods. That result has ignited a fierce debate about what these methods are actually doing. One of the criticisms has been that the AI does not have any sense of the underlying physics but is merely performing pattern recognition. Here, we address that issue by analyzing the extent to which the methods identify rare structural motifs. The rationale underlying the approach is that a pattern recognition machine tends to choose the more frequently occurring motifs, whereas some sense of subtle energetic factors is required to choose infrequently occurring ones. To reduce the possibility of bias from related experimental structures and to minimize the effect of experimental errors, we examined only CASP14 target protein crystal structures determined to a resolution limit better than 2 Å, which lacked significant amino acid sequence homology to proteins of known structure. In those experimental structures and in the corresponding models, we track cis peptides, π-helices, 3
10 -helices, and other small 3D motifs that occur in the PDB database at a frequency of lower than 1% of total amino acid residues. The best-performing AI method, AlphaFold2, captured these uncommon structural elements exquisitely well. All discrepancies appeared to be a consequence of crystal environment effects. We propose that the neural network learned a protein structure potential of mean force, enabling it to correctly identify situations where unusual structural features represent the lowest local free energy because of subtle influences from the atomic environment.- Published
- 2023
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18. Understanding the Molecular Basis for Homodimer Formation of the Pneumococcal Endolysin Cpl-1.
- Author
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Alreja AB, Linden SB, Lee HR, Chao KL, Herzberg O, and Nelson DC
- Subjects
- Endopeptidases genetics, Endopeptidases metabolism, Choline metabolism, Streptococcus pneumoniae genetics, Bacteriophages
- Abstract
The rise of multi-drug-resistant bacteria that cannot be treated with traditional antibiotics has prompted the search for alternatives to combat bacterial infections. Endolysins, which are bacteriophage-derived peptidoglycan hydrolases, are attractive tools in this fight. Several studies have already demonstrated the efficacy of endolysins in targeting bacterial infections. Endolysins encoded by bacteriophages that infect Gram-positive bacteria typically possess an N-terminal catalytic domain and a C-terminal cell-wall binding domain (CWBD). In this study, we have uncovered the molecular mechanisms that underlie formation of a homodimer of Cpl-1, an endolysin that targets Streptococcus pneumoniae . Here, we use site-directed mutagenesis, analytical size exclusion chromatography, and analytical ultracentrifugation to disprove a previous suggestion that three residues at the N-terminus of the CWBD are involved in the formation of a Cpl-1 dimer in the presence of choline in solution. We conclusively show that the C-terminal tail region of Cpl-1 is involved in formation of the dimer. Alanine scanning mutagenesis generated various tail mutant constructs that allowed identification of key residues that mediate Cpl-1 dimer formation. Finally, our results allowed identification of a consensus sequence (FxxEPDGLIT) required for choline-dependent dimer formation─a sequence that occurs frequently in pneumococcal autolysins and endolysins. These findings shed light on the mechanisms of Cpl-1 and related enzymes and can be used to inform future engineering efforts for their therapeutic development against S. pneumoniae .
- Published
- 2023
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19. Flexibility in action: Development of locomotion under overhead barriers.
- Author
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Rachwani J, Herzberg O, Kaplan BE, Comalli DM, O'Grady S, and Adolph KE
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- Adult, Female, Humans, Infant, Male, Posture, Locomotion, Walking
- Abstract
Behavioral flexibility-the ability to tailor motor actions to changing body-environment relations-is critical for functional movement. Navigating the everyday environment requires the ability to generate a wide repertoire of actions, select the appropriate action for the current situation, and implement it quickly and accurately. We used a new, adjustable barrier paradigm to assess flexibility of motor actions in 20 17-month-old (eight girls, 12 boys) and 14 13-month-old (seven girls, eight boys) walking infants and a comparative sample of 14 adults (eight women, six men). Most participants were White, non-Hispanic, and middle class. Participants navigated under barriers normalized to their standing height (overhead, eye, chest, hip, and knee heights). Decreases in barrier height required lower postures for passage. Every participant altered their initial walking posture according to barrier height for every trial, and all but two 13-month-olds found solutions for passage. Compared to infants, adults displayed a wider variety of strategies (squat-walking, half-kneeling, etc.), found more appropriate solutions based on barrier height (ducked at eye height and low crawled at knee height), and implemented their solutions more quickly (within 4 s) and accurately (without bumping their heads against the barrier). Infants frequently crawled even when the barrier height did not warrant a low posture, displayed multiple postural shifts prior to passage and thus took longer to go, and often bumped their heads. Infants' improvements were related to age and walking experience. Thus, development of flexibility likely involves the contributions of multiple domains-motor, perception, and cognition-that facilitate strategy selection and implementation. (PsycInfo Database Record (c) 2022 APA, all rights reserved).
- Published
- 2022
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20. Object play in the everyday home environment generates rich opportunities for infant learning.
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Swirbul MS, Herzberg O, and Tamis-LeMonda CS
- Subjects
- Humans, Infant, Learning, Play and Playthings, Exploratory Behavior, Home Environment
- Abstract
Infants everywhere engage with objects throughout the day, even if the objects of play differ across cultures. Indeed, object play is a universal context for learning. Yet, the characteristics of object play at home remain largely unexamined, especially in infants from non-English-speaking backgrounds. Through frame-by-frame video coding, we documented Hispanic infants' object interactions based on 1-2 h of naturalistic home observations. Infants interacted with a wide variety of toys and household objects in brief bouts that summed to ~60% of their time. As infants transition among objects, they serendipitously generate opportunities for learning that support development across domains., (Copyright © 2022. Published by Elsevier Inc.)
- Published
- 2022
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21. Joint engagement in the home environment is frequent, multimodal, timely, and structured.
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Suarez-Rivera C, Schatz JL, Herzberg O, and Tamis-LeMonda CS
- Subjects
- Humans, Infant, Home Environment
- Abstract
Infants develop in a social context, surrounded by knowledgeable caregivers who scaffold learning through shared engagement with objects. However, researchers have typically examined joint engagement in structured tasks, where caregivers sit near infants and display frequent, prompt, and multimodal behaviors around the objects of infant action. Which features of joint engagement generalize to the real-world? Despite the importance of joint engagement for infant learning, critical assumptions around joint engagement in everyday interaction remain unexamined. We investigated behavioral and temporal features of joint engagement in the home environment, where objects for play abound and dyad proximity fluctuates. Infant manual actions, mother manual and verbal behaviors, and dyad proximity were coded frame-by-frame from 2-h naturalistic recordings of 13- to 23-month-old infants and their mothers (N = 38). Infants experienced rich, highly structured, multimodal mother input around the objects of their actions. Specifically, joint engagement occurred within seconds of infant action and was amplified in the context of interpersonal proximity. Findings validate laboratory-based research on characteristics of joint engagement while highlighting unique properties around the role of mother-infant proximity and temporal structuring of caregiver input over extended time frames. Implications for the social contexts that support infant learning and development are discussed., (© 2022 International Congress of Infant Studies (ICIS).)
- Published
- 2022
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22. Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia.
- Author
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Hiregange DG, Rivalta A, Bose T, Breiner-Goldstein E, Samiya S, Cimicata G, Kulakova L, Zimmerman E, Bashan A, Herzberg O, and Yonath A
- Subjects
- Animals, Cryoelectron Microscopy, Eukaryota genetics, Humans, RNA, Ribosomal metabolism, Ribosomes metabolism, Giardia lamblia genetics, Giardiasis metabolism, Parasites genetics
- Abstract
Giardiasis is a disease caused by the protist Giardia lamblia. As no human vaccines have been approved so far against it, and resistance to current drugs is spreading, new strategies for combating giardiasis need to be developed. The G. lamblia ribosome may provide a promising therapeutic target due to its distinct sequence differences from ribosomes of most eukaryotes and prokaryotes. Here, we report the cryo-electron microscopy structure of the G. lamblia (WB strain) ribosome determined at 2.75 Å resolution. The ribosomal RNA is the shortest known among eukaryotes, and lacks nearly all the eukaryote-specific ribosomal RNA expansion segments. In contrast, the ribosomal proteins are typically eukaryotic with some species-specific insertions/extensions. Most typical inter-subunit bridges are maintained except for one missing contact site. Unique structural features are located mainly at the ribosome's periphery. These may be exploited as target sites for the design of new compounds that inhibit selectively the parasite's ribosomal activity., (© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2022
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23. Structure of Escherichia coli O157:H7 bacteriophage CBA120 tailspike protein 4 baseplate anchor and tailspike assembly domains (TSP4-N).
- Author
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Chao KL, Shang X, Greenfield J, Linden SB, Alreja AB, Nelson DC, and Herzberg O
- Subjects
- Crystallography, X-Ray, Host Microbial Interactions physiology, Lipopolysaccharides metabolism, Models, Molecular, Protein Structure, Quaternary, Protein Structure, Tertiary, Ultracentrifugation, Bacteriophages genetics, Bacteriophages metabolism, Escherichia coli O157 virology, Genome, Viral genetics, Glycoside Hydrolases metabolism, Viral Tail Proteins metabolism
- Abstract
Four tailspike proteins (TSP1-4) of Escherichia coli O157:H7 bacteriophage CBA120 enable infection of multiple hosts. They form a branched complex that attaches to the tail baseplate. Each TSP recognizes a different lipopolysaccharide on the membrane of a different bacterial host. The 335 N-terminal residues of TSP4 promote the assembly of the TSP complex and anchor it to the tail baseplate. The crystal structure of TSP4-N
335 reveals a trimeric protein comprising four domains. The baseplate anchor domain (AD) contains an intertwined triple-stranded β-helix. The ensuing XD1, XD2 and XD3 β-sheet containing domains mediate the binding of TSP1-3 to TSP4. Each of the XD domains adopts the same fold as the respective XD domains of bacteriophage T4 gp10 baseplate protein, known to engage in protein-protein interactions via its XD2 and XD3 domains. The structural similarity suggests that XD2 and XD3 of TSP4 also function in protein-protein interactions. Analytical ultracentrifugation analyses of TSP4-N335 and of domain deletion proteins showed how TSP4-N335 promotes the formation of the TSP quaternary complex. TSP1 and TSP2 bind directly to TSP4 whereas TSP3 binding requires a pre-formed TSP4-N335 :TSP2 complex. A 3-dimensional model of the bacteriophage CBA120 TSP complex has been developed based on the structural and ultracentrifuge information., (© 2022. The Author(s).)- Published
- 2022
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24. Infant exuberant object play at home: Immense amounts of time-distributed, variable practice.
- Author
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Herzberg O, Fletcher KK, Schatz JL, Adolph KE, and Tamis-LeMonda CS
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- Child, Child, Preschool, Humans, Infant, Infant Behavior, Learning, Male, Motor Skills, Play and Playthings, Child Development, Walking
- Abstract
Object play yields enormous benefits for infant development. However, little is known about natural play at home where most object interactions occur. We conducted frame-by-frame video analyses of spontaneous activity in two 2-h home visits with 13-month-old crawling infants and 13-, 18-, and 23-month-old walking infants (N = 40; 21 boys; 75% White). Regardless of age, for every infant and time scale, across 10,015 object bouts, object interactions were short (median = 9.8 s) and varied (transitions among dozens of toys and non-toys) but consumed most of infants' time. We suggest that infant exuberant object play-immense amounts of brief, time-distributed, variable interactions with objects-may be conducive to learning object properties and functions, motor skill acquisition, and growth in cognitive, social, and language domains., (© 2021 The Authors. Child Development © 2021 Society for Research in Child Development.)
- Published
- 2022
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25. Computational models in the service of X-ray and cryo-electron microscopy structure determination.
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Kryshtafovych A, Moult J, Albrecht R, Chang GA, Chao K, Fraser A, Greenfield J, Hartmann MD, Herzberg O, Josts I, Leiman PG, Linden SB, Lupas AN, Nelson DC, Rees SD, Shang X, Sokolova ML, and Tidow H
- Subjects
- Protein Conformation, Software, Computational Biology methods, Cryoelectron Microscopy, Crystallography, X-Ray, Models, Molecular, Proteins chemistry
- Abstract
Critical assessment of structure prediction (CASP) conducts community experiments to determine the state of the art in computing protein structure from amino acid sequence. The process relies on the experimental community providing information about not yet public or about to be solved structures, for use as targets. For some targets, the experimental structure is not solved in time for use in CASP. Calculated structure accuracy improved dramatically in this round, implying that models should now be much more useful for resolving many sorts of experimental difficulties. To test this, selected models for seven unsolved targets were provided to the experimental groups. These models were from the AlphaFold2 group, who overall submitted the most accurate predictions in CASP14. Four targets were solved with the aid of the models, and, additionally, the structure of an already solved target was improved. An a posteriori analysis showed that, in some cases, models from other groups would also be effective. This paper provides accounts of the successful application of models to structure determination, including molecular replacement for X-ray crystallography, backbone tracing and sequence positioning in a cryo-electron microscopy structure, and correction of local features. The results suggest that, in future, there will be greatly increased synergy between computational and experimental approaches to structure determination., (© 2021 Wiley Periodicals LLC.)
- Published
- 2021
- Full Text
- View/download PDF
26. (Hyper)active Data Curation: A Video Case Study from Behavioral Science.
- Author
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Soska KC, Xu M, Gonzalez SL, Herzberg O, Tamis-LeMonda CS, Gilmore RO, and Adolph KE
- Abstract
Video data are uniquely suited for research reuse and for documenting research methods and findings. However, curation of video data is a serious hurdle for researchers in the social and behavioral sciences, where behavioral video data are obtained session by session and data sharing is not the norm. To eliminate the onerous burden of post hoc curation at the time of publication (or later), we describe best practices in active data curation-where data are curated and uploaded immediately after each data collection to allow instantaneous sharing with one button press at any time. Indeed, we recommend that researchers adopt "hyperactive" data curation where they openly share every step of their research process. The necessary infrastructure and tools are provided by Databrary-a secure, web-based data library designed for active curation and sharing of personally identifiable video data and associated metadata. We provide a case study of hyperactive curation of video data from the Play and Learning Across a Year (PLAY) project, where dozens of researchers developed a common protocol to collect, annotate, and actively curate video data of infants and mothers during natural activity in their homes at research sites across North America. PLAY relies on scalable standardized workflows to facilitate collaborative research, assure data quality, and prepare the corpus for sharing and reuse throughout the entire research process.
- Published
- 2021
- Full Text
- View/download PDF
27. Discovery and Preclinical Development of Antigiardiasis Fumagillol Derivatives.
- Author
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Padia J, Kulakova L, Galkin A, and Herzberg O
- Subjects
- Animals, Caco-2 Cells, Cyclohexanes, Humans, Sesquiterpenes, Trophozoites, Giardia lamblia, Giardiasis drug therapy
- Abstract
Giardiasis, caused by the intestinal parasite Giardia lamblia , is a severe diarrheal disease, endemic in poverty-stricken regions of the world, and also a common infection in developed countries. The available therapeutic options are associated with adverse effects, and G. lamblia resistance to the standard-of-care drugs is spreading. Fumagillin, an antimicrosporidiosis drug, is a therapeutic agent with potential for the treatment of giardiasis. However, it exhibits considerable, albeit reversible, toxicity when used to treat immunocompromised microsporidiosis patients. Fumagillin is also a highly unstable compound. To address these liabilities, we designed and synthesized stable fumagillol derivatives with lower levels of permeation across polarized epithelial Caco-2 cells and better potency against G. lamblia trophozoites than fumagillin. Metronidazole-resistant G. lamblia strains were also susceptible to the new fumagillol derivatives. In addition, these compounds were more potent against the amebiasis-causing parasite Entamoeba histolytica than fumagillin. Two compounds exhibited better thermal and acid stability than fumagillin, which should prolong the drug shelf life and reduce compound degradation in the stomach. Studies with a mouse model of giardiasis with the most stable compound, 4-(((((3 R ,4 S ,5 S ,6 R )-5-methoxy-4-((2 R ,3 R )-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl)oxy)carbonyl)amino)benzoic acid (compound 9), revealed that it had better efficacy (effective dose [ED]) than fumagillin at both the fully curative dose (the 100% ED) of 6.6 mg/kg of body weight and a 50% ED of 0.064 mg/kg. Plasma pharmacokinetics revealed the slow absorption of compound 9 through the gut, consistent with the in vitro characterization in Caco-2 cells. An acute-dose study yielded a maximum tolerated dose (MTD) of 1,500 mg/kg, 227-fold higher than the fully curative dose. Thus, along with improved stability, compound 9 also exhibited an excellent therapeutic window., (Copyright © 2020 Padia et al.)
- Published
- 2020
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- View/download PDF
28. Structure and function of bacteriophage CBA120 ORF211 (TSP2), the determinant of phage specificity towards E. coli O157:H7.
- Author
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Greenfield J, Shang X, Luo H, Zhou Y, Linden SB, Heselpoth RD, Leiman PG, Nelson DC, and Herzberg O
- Subjects
- Bacteriophages metabolism, Bacteriophages pathogenicity, Catalytic Domain, Escherichia coli O157 metabolism, Glycoside Hydrolases, Species Specificity, Viral Tail Proteins genetics, Viral Tail Proteins metabolism, Virion, Bacteriophages genetics, Escherichia coli O157 genetics, Viral Tail Proteins ultrastructure
- Abstract
The genome of Escherichia coli O157:H7 bacteriophage vB_EcoM_CBA120 encodes four distinct tailspike proteins (TSPs). The four TSPs, TSP1-4, attach to the phage baseplate forming a branched structure. We report the 1.9 Å resolution crystal structure of TSP2 (ORF211), the TSP that confers phage specificity towards E. coli O157:H7. The structure shows that the N-terminal 168 residues involved in TSPs complex assembly are disordered in the absence of partner proteins. The ensuing head domain contains only the first of two fold modules seen in other phage vB_EcoM_CBA120 TSPs. The catalytic site resides in a cleft at the interface between adjacent trimer subunits, where Asp506, Glu568, and Asp571 are located in close proximity. Replacement of Asp506 and Asp571 for alanine residues abolishes enzyme activity, thus identifying the acid/base catalytic machinery. However, activity remains intact when Asp506 and Asp571 are mutated into asparagine residues. Analysis of additional site-directed mutants in the background of the D506N:D571N mutant suggests engagement of an alternative catalytic apparatus comprising Glu568 and Tyr623. Finally, we demonstrate the catalytic role of two interacting glutamate residues of TSP1, located in a cleft between two trimer subunits, Glu456 and Glu483, underscoring the diversity of the catalytic apparatus employed by phage vB_EcoM_CBA120 TSPs.
- Published
- 2020
- Full Text
- View/download PDF
29. Postural, Visual, and Manual Coordination in the Development of Prehension.
- Author
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Rachwani J, Herzberg O, Golenia L, and Adolph KE
- Subjects
- Adolescent, Female, Humans, Infant, Male, Motor Skills physiology, Posture physiology, Young Adult, Hand physiology, Psychomotor Performance physiology
- Abstract
We investigated the real-time cascade of postural, visual, and manual actions for object prehension in 38 6- to 12-month-old infants (all independent sitters) and eight adults. Participants' task was to retrieve a target as they spun past it at different speeds on a motorized chair. A head-mounted eye tracker recorded visual actions and video captured postural and manual actions. Prehension played out in a coordinated sequence of postural-visual-manual behaviors starting with turning the head and trunk to bring the toy into view, which in turn instigated the start of the reach. Visually fixating the toy to locate its position guided the hand for toy contact and retrieval. Prehension performance decreased at faster speeds, but quick planning and implementation of actions predicted better performance., (© 2019 Society for Research in Child Development.)
- Published
- 2019
- Full Text
- View/download PDF
30. Intracellular Delivery of an Antibody Targeting Gasdermin-B Reduces HER2 Breast Cancer Aggressiveness.
- Author
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Molina-Crespo Á, Cadete A, Sarrio D, Gámez-Chiachio M, Martinez L, Chao K, Olivera A, Gonella A, Díaz E, Palacios J, Dhal PK, Besev M, Rodríguez-Serrano M, García Bermejo ML, Triviño JC, Cano A, García-Fuentes M, Herzberg O, Torres D, Alonso MJ, and Moreno-Bueno G
- Subjects
- Animals, Breast Neoplasms immunology, Breast Neoplasms pathology, Cell Line, Tumor, Drug Delivery Systems methods, Female, Gene Expression Regulation, Neoplastic, Humans, Intracellular Space, Mice, Nanocapsules chemistry, Neoplasm Proteins metabolism, Receptor, ErbB-2 metabolism, Xenograft Model Antitumor Assays, Antibodies, Monoclonal pharmacology, Breast Neoplasms drug therapy, Cell Movement, Drug Resistance, Neoplasm, Neoplasm Proteins antagonists & inhibitors, Receptor, ErbB-2 antagonists & inhibitors, Trastuzumab pharmacology
- Abstract
Purpose: Gasdermin B (GSDMB) overexpression/amplification occurs in about 60% of HER2 breast cancers, where it promotes cell migration, resistance to anti-HER2 therapies, and poor clinical outcome. Thus, we tackle GSDMB cytoplasmic overexpression as a new therapeutic target in HER2 breast cancers., Experimental Design: We have developed a new targeted nanomedicine based on hyaluronic acid-biocompatible nanocapsules, which allow the intracellular delivery of a specific anti-GSDMB antibody into HER2 breast cancer cells both in vitro and in vivo ., Results: Using different models of HER2 breast cancer cells, we show that anti-GSDMB antibody loaded to nanocapsules has significant and specific effects on GSDMB-overexpressing cancer cells' behavior in ways such as (i) lowering the in vitro cell migration induced by GSDMB; (ii) enhancing the sensitivity to trastuzumab; (iii) reducing tumor growth by increasing apoptotic rate in orthotopic breast cancer xenografts; and (iv) diminishing lung metastasis in MDA-MB-231-HER2 cells in vivo . Moreover, at a mechanistic level, we have shown that AbGB increases GSDMB binding to sulfatides and consequently decreases migratory cell behavior and may upregulate the potential intrinsic procell death activity of GSDMB., Conclusions: Our findings portray the first evidence of the effectiveness and specificity of an antibody-based nanomedicine that targets an intracellular oncoprotein. We have proved that intracellular-delivered anti-GSDMB reduces diverse protumor GSDMB functions (migration, metastasis, and resistance to therapy) in an efficient and specific way, thus providing a new targeted therapeutic strategy in aggressive HER2 cancers with poor prognosis., (©2019 American Association for Cancer Research.)
- Published
- 2019
- Full Text
- View/download PDF
31. Structure and tailspike glycosidase machinery of ORF212 from E. coli O157:H7 phage CBA120 (TSP3).
- Author
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Greenfield J, Shang X, Luo H, Zhou Y, Heselpoth RD, Nelson DC, and Herzberg O
- Subjects
- Bacteriophages enzymology, Catalytic Domain, Crystallography, X-Ray, Enzyme Stability, Escherichia coli Infections microbiology, Humans, Models, Molecular, Protein Conformation, Bacteriophages chemistry, Escherichia coli O157 virology, Glycoside Hydrolases chemistry, Viral Tail Proteins chemistry
- Abstract
Bacteriophage tailspike proteins mediate virion absorption through reversible primary receptor binding, followed by lipopolysaccharide or exopolysaccharide degradation. The Escherichia coli O157:H7 bacteriophage CBA120 genome encodes four distinct tailspike proteins, annotated as ORFs 210 through 213. Previously, we reported the crystal structure of ORF210 (TSP1). Here we describe the crystal structure of ORF212 (TSP3) determined at 1.85 Å resolution. As observed with other tailspike proteins, TSP3 assembles into a trimer. Each subunit of TSP3 has an N-terminal head domain that is structurally similar to that of TSP1, consistent with their high amino acid sequence identity. In contrast, despite sharing a β-helix fold, the overall structure of the C-terminal catalytic domain of TSP3 is quite different when compared to TSP1. The TSP3 structure suggests that the glycosidase active site resides in a cleft at the interface between two adjacent subunits where three acidic residues, Glu362 and Asp383 on one subunit, and Asp426 on a second subunit, are located in close proximity. Comparing the glycosidase activity of wild-type TSP3 to various point mutants revealed that catalysis requires the carboxyl groups of Glu362 and Asp426, and not of Asp383, confirming the enzyme employs two carboxyl groups to degrade lippopolysaccharide using an acid/base mechanism.
- Published
- 2019
- Full Text
- View/download PDF
32. Assessing and monitoring the impact of the national newborn hearing screening program in Israel.
- Author
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Wasser J, Ari-Even Roth D, Herzberg O, Lerner-Geva L, and Rubin L
- Subjects
- Humans, Infant, Infant, Newborn, Israel, Neonatal Screening methods, Hearing Loss diagnosis, Neonatal Screening standards, Parents psychology, Program Evaluation methods
- Abstract
Background: The Israeli Newborn Hearing Screening Program (NHSP) began operating nationally in January 2010. The program includes the Otoacoustic Emissions (OAE) test for all newborns and Automated Auditory Brainstem Response (A-ABR) test for failed OAE and infants at risk for auditory neuropathy spectrum disorders. NHSP targets are diagnosis of hearing impairment by age three months and initiation of habilitation by six months., Objectives: (1) Review NHSP coverage; (2) Assess NHSP impact on age at diagnosis for hearing impairment and age at initiation of habilitation; (3) Identify contributing factors and barriers to NHSP success., Methods: (1) Analysis of screening coverage and referral rates for the NHSP; (2) Analysis of demographic data, results of coverage, age at diagnosis and initiation of habilitation for hearing impaired infants pre-implementation and post-implementation of NHSP from 10 habilitation centers; (3) Telephone interviews with parents whose infants failed the screening and were referred for further testing., Results: The NHSP coverage was 98.7% (95.1 to 100%) for approximately 179,000 live births per year for 2014-2016 and average referral rates were under 3%. After three years of program implementation, median age at diagnosis was 3.7 months compared to 9.5 months prior to NHSP. The median age at initiation of habilitation after three years of NHSP was 9.4 months compared to 19.0 prior to NHSP. Parents (84% of 483 sampled) with infants aged 4-6 months participated in the telephone survey. While 84% of parents reported receiving a verbal explanation of the screening results, more than half of the parents reported not receiving written material. Parental report of understanding the test results and a heightened level of concern over the failed screen were associated with timely follow-up., Conclusions: The findings indicate high screening coverage. The program reduced ages at diagnosis and initiation of habilitation for hearing impaired infants. Further steps needed to streamline the NHSP are improving communication among caregivers to parents to reduce anxiety; increasing efficiency in transferring information between service providers using advanced technology while ensuring continuum of care; reducing wait time for follow-up testing in order to meet program objectives. Establishment of a routine monitoring system is underway.
- Published
- 2019
- Full Text
- View/download PDF
33. Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016).
- Author
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Kryshtafovych A, Albrecht R, Baslé A, Bule P, Caputo AT, Carvalho AL, Chao KL, Diskin R, Fidelis K, Fontes CMGA, Fredslund F, Gilbert HJ, Goulding CW, Hartmann MD, Hayes CS, Herzberg O, Hill JC, Joachimiak A, Kohring GW, Koning RI, Lo Leggio L, Mangiagalli M, Michalska K, Moult J, Najmudin S, Nardini M, Nardone V, Ndeh D, Nguyen TH, Pintacuda G, Postel S, van Raaij MJ, Roversi P, Shimon A, Singh AK, Sundberg EJ, Tars K, Zitzmann N, and Schwede T
- Subjects
- Animals, Bacteria chemistry, Crystallography, X-Ray, Humans, Protein Folding, Software, Computational Biology methods, Models, Molecular, Protein Conformation, Proteins chemistry
- Abstract
The functional and biological significance of the selected CASP12 targets are described by the authors of the structures. The crystallographers discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP12 experiment., (© 2017 Wiley Periodicals, Inc.)
- Published
- 2018
- Full Text
- View/download PDF
34. Reply to HU et al.: On the interpretation of gasdermin-B expression quantitative trait loci data.
- Author
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Pal LR, Chao KL, Moult J, and Herzberg O
- Subjects
- Models, Genetic, Chromosome Mapping, Quantitative Trait Loci
- Abstract
Competing Interests: The authors declare no conflict of interest.
- Published
- 2017
- Full Text
- View/download PDF
35. A protein-protein interaction dictates Borrelial infectivity.
- Author
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Thakur M, Sharma K, Chao K, Smith AA, Herzberg O, and Pal U
- Subjects
- Amino Acid Sequence, Animals, Bacterial Proteins chemistry, Bacterial Proteins genetics, Binding Sites, Disease Models, Animal, Lyme Disease microbiology, Mice, Protein Binding, Protein Interaction Domains and Motifs, Bacterial Proteins metabolism, Borrelia burgdorferi physiology, Host-Pathogen Interactions, Lyme Disease metabolism
- Abstract
Two Borrelia burgdorferi interacting proteins, BB0238 and BB0323, play distinct roles in pathogen biology and infectivity although a significance of their interaction remained enigmatic. Here we identified the polypeptide segment essential for BB0238-BB0323 interaction and examined how it supports spirochete infectivity. We show that the interaction region in BB0323 requires amino acid residues 22-200, suggesting that the binding encompasses discontinuous protein segments. In contrast, the interaction region in BB0238 spans only 11 amino acids, residues 120-130. A deletion of these 11 amino acids neither alters the overall secondary structure of the protein, nor affects its stability or oligomerization property, however, it reduces the post-translational stability of the binding partner, BB0323. Mutant B. burgdorferi isolates producing BB0238 lacking the 11-amino acid interaction region were able to persist in ticks but failed to transmit to mice or to establish infection. These results suggest that BB0238-BB0323 interaction is critical for post-translational stability of BB0323, and that this interaction is important for mammalian infectivity and transmission of B. burgdorferi. We show that saturation or inhibition of BB0238-BB0323 interaction could be studied in a luciferase assay, which could be amenable for future identification of small molecule inhibitors to combat B. burgdorferi infection.
- Published
- 2017
- Full Text
- View/download PDF
36. Gene polymorphism linked to increased asthma and IBD risk alters gasdermin-B structure, a sulfatide and phosphoinositide binding protein.
- Author
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Chao KL, Kulakova L, and Herzberg O
- Subjects
- Amino Acid Sequence, Cardiolipins metabolism, Carrier Proteins chemistry, Carrier Proteins metabolism, Caspases metabolism, Crystallography, X-Ray, Humans, Immobilized Proteins metabolism, Liposomes, Membranes, Artificial, Models, Molecular, Neoplasm Proteins chemistry, Neoplasm Proteins metabolism, Protein Binding, Protein Conformation, Protein Isoforms metabolism, Recombinant Proteins metabolism, Sequence Alignment, Sequence Homology, Amino Acid, Structure-Activity Relationship, Asthma genetics, Carrier Proteins genetics, Inflammatory Bowel Diseases genetics, Neoplasm Proteins genetics, Phosphatidylinositols metabolism, Polymorphism, Single Nucleotide
- Abstract
The exact function of human gasdermin-B (GSDMB), which regulates differentiation and growth of epithelial cells, is yet to be elucidated. In human epidermal growth factor receptor 2 (HER2)-positive breast cancer, GSDMB gene amplification and protein overexpression indicate a poor response to HER2-targeted therapy. Genome-wide association studies revealed a correlation between GSDMB SNPs and an increased susceptibility to Crohn's disease, ulcerative colitis, and asthma. The N- and C-terminal domains of all gasdermins possess lipid-binding and regulatory activities, respectively. Inflammatory caspases cleave gasdermin-D in the interdomain linker but not GSDMB. The cleaved N-terminal domain binds phosphoinositides and cardiolipin, forms membrane-disrupting pores, and executes pyroptosis. We show that both full-length GSDMB and the N-terminal domain bind to nitrocellulose membranes immobilized with phosphoinositides or sulfatide, but not with cardiolipin. In addition, the GSDMB N-terminal domain binds liposomes containing sulfatide. The crystal structure of the GSDMB C-terminal domain reveals the structural impact of the amino acids encoded by SNPs that are linked to asthma and inflammatory bowel disease (IBD). A loop that carries the polymorphism amino acids corresponding to healthy individuals (Gly299:Pro306) exhibits high conformational flexibility, whereas the loop carrying amino acids found in individuals with increased disease risk (Arg299:Ser306) exhibits a well-defined conformation and higher positive surface charge. Apoptotic executioner caspase-3, -6, and -7, but not the inflammatory caspases, cleave GSDMB at
88 DNVD91 within the N-terminal domain. Selective sulfatide binding may indicate possible function for GSDMB in the cellular sulfatide transport.- Published
- 2017
- Full Text
- View/download PDF
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