118 results on '"Hilpert M"'
Search Results
2. Influence of pump laser fluence on ultrafast structural changes in myoglobin
- Author
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Barends, T., Bhattacharyya, S., Gorel, A., Schiro, G., Bacellar, C., Cirelli, C., Colletier, J., Foucar, L., Grünbein, M., Hartmann, E., Hilpert, M., Johnson, P., Kloos, M., Knopp, G., Marekha, B., Nass, K., Nass Kovacs, G., Ozerov, D., Stricker, M., Weik, M., Doak, R., Shoeman, R., Milne, C., Huix-Rotllant, M., Cammarata, M., and Schlichting, I.
- Abstract
SummaryHigh-intensity femtosecond pulses from an X-ray free-electron laser enable pump probe experiments for investigating electronic and nuclear changes during light-induced reactions. On time scales ranging from femtoseconds to milliseconds and for a variety of biological systems, time-resolved serial femtosecond crystallography (TR-SFX) has provided detailed structural data for light-induced isomerization, breakage or formation of chemical bonds and electron transfer1. However, all ultra-fast TR-SFX studies to date have employed such high pump laser energies that several photons were nominally absorbed per chromophore2-14. As multiphoton absorption may force the protein response into nonphysiological pathways, it is of great concern15whether this experimental approach16allows valid inferences to be drawn vis-à-vis biologically relevant single-photon-induced reactions17. Here we describe ultrafast pump-probe SFX experiments on photodissociation of carboxymyoglobin, showing that different pump laser fluences yield markedly different results. In particular, the dynamics of structural changes and observed indicators of the mechanistically important coherent oscillations of the Fe-CO bond distance (predicted by recent quantum wavepacket dynamics15) are seen to depend strongly on pump laser energy. Our results confirm both the feasibility and necessity of performing TR-SFX pump probe experiments in the linear photoexcitation regime. We consider this to be a starting point for reassessing design and interpretation of ultrafast TR-SFX pump probe experiments16such that biologically relevant insight emerges.
- Published
- 2022
- Full Text
- View/download PDF
3. Recent changes in spoken British English according to spoken BNC2014
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Flach, Susanne; https://orcid.org/0000-0002-7469-2703, Hilpert, Martin, Flach, S ( Susanne ), Hilpert, M ( Martin ), Schneider, Gerold; https://orcid.org/0000-0002-1905-6237, Flach, Susanne; https://orcid.org/0000-0002-7469-2703, Hilpert, Martin, Flach, S ( Susanne ), Hilpert, M ( Martin ), and Schneider, Gerold; https://orcid.org/0000-0002-1905-6237
- Abstract
Starting from a data-driven approach, the current paper compares the BNC1994 spoken to the BNC2014. We first narrow down possible research questions due to differences in the compilation and transcription of the two BNC generations. Then we investigate three robustly detectable changes at the level of lexis and morphosyntax: (1) gender and class differences, (2) the increase of be- and get-passive constructions and -ing forms from the verbal domain, and (3) the in- crease of noun compounds from the nominal domain. We also focus on the so- cial context in which linguistic changes are embedded: which noun compounds particularly increase; which words are overused by which gender or social class? Technology seems to be a driver in the further advance of the construction of noun compounds, and strong swearing seems to have decreased between 1994 and 2014.
- Published
- 2022
4. Metal exposure and biomarker levels among e-cigarette users in Spain
- Author
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Olmedo P, Rodrigo L, Grau-Perez M, Hilpert M, Navas-Acien A, Tellez-Plaza M, Pla A, and Gil F
- Subjects
Metal ,Biomarker ,e-cigarette ,Urine ,Hair - Abstract
The use of electronic cigarettes (e-cigarettes) has increased due to the belief that they are healthier than tobacco cigarettes. E-cigarettes contain a metallic heating coil (composed of Ni, Cr, Al and other metals) to heat a solution (commonly called e-liquid) and convert it into an aerosol. This aerosol is inhaled (vaped) by the users who can be potentially exposed to a wide variety of metals. We investigated the possible transfer of metals from the coil to the e-liquid and the generated aerosol, and how the exposure to this aerosol can increase metal body burden in ecigarette users. We recruited 75 e-cigarette users (50 who only vaped and 25 dual users who vaped and smoked) and 25 controls who neither vaped nor smoked. E-liquid samples before (dispenser e-liquid) and after (tank eliquid) being added to their devices were collected. Aerosol samples were collected using a condensation method. All participants provided urine and hair samples. All samples were analyzed for metals by ICP-MS. We observed higher metal concentrations in the aerosol and tank e-liquid (in contact with the coil) compared to the dispenser e-liquid (before contact with the coil). The median concentrations for some of the metals with the most remarkable increases in aerosol and tank e-liquid vs. dispenser e-liquid were 36.90 and 62.73 vs. 18.29 mu g/kg for Al; 6.71 and 28.97 vs. 0.98 mu g/kg for Cr; 91.39 and 414.47 vs. 1.64 mu g/kg for Ni; 738.99 and 744.24 vs. 16.56 mu g/ kg for Zn; and 10.17 and 22.31 vs. 0.88 mu g/kg for Pb. We also found detectable and potentially high concentrations of other metals such as Mn, Cu, Sb and Sn. In urine, increases in the median levels (mu g/g creatinine) in vapers/duals vs. controls were observed for some metals, including Cr (0.34/0.28 vs. 0.20), Cu (1.72/2.36 vs. 1.46), Sn (0.26/0.31 vs. 0.18) and Pb (0.39/0.44 vs. 0.22). In hair, there were no differences in metal concentrations among the three groups. In conclusion, e-cigarettes are likely a source of metals such as Cr, Cu, Ni, Pb or Sn. These metals come from the device, likely the heating resistance, as their concentrations were low in the dispenser e-liquid and higher in the aerosol and the e-liquid left in the tank. Although the exposure to e-cigarette aerosol can have an influence in the body burden of metals, aerosol metal levels were not clearly associated with metal levels in biological samples such as urine or hair in e-cigarette users in this study.
- Published
- 2021
5. Mechanism and dynamics of fatty acid photodecarboxylase
- Author
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Sorigué, D., primary, Hadjidemetriou, K., additional, Blangy, S., additional, Gotthard, G., additional, Bonvalet, A., additional, Coquelle, N., additional, Samire, P., additional, Aleksandrov, A., additional, Antonucci, L., additional, Benachir, A., additional, Boutet, S., additional, Byrdin, M., additional, Cammarata, M., additional, Carbajo, S., additional, Cuiné, S., additional, Doak, R. B., additional, Foucar, L., additional, Gorel, A., additional, Grünbein, M., additional, Hartmann, E., additional, Hienerwadel, R., additional, Hilpert, M., additional, Kloos, M., additional, Lane, T. J., additional, Légeret, B., additional, Legrand, P., additional, Li-Beisson, Y., additional, Moulin, S. L. Y., additional, Nurizzo, D., additional, Peltier, G., additional, Schirò, G., additional, Shoeman, R. L., additional, Sliwa, M., additional, Solinas, X., additional, Zhuang, B., additional, Barends, T. R. M., additional, Colletier, J.-P., additional, Joffre, M., additional, Royant, A., additional, Berthomieu, C., additional, Weik, M., additional, Domratcheva, T., additional, Brettel, K., additional, Vos, M. H., additional, Schlichting, I., additional, Arnoux, P., additional, Müller, P., additional, and Beisson, F., additional
- Published
- 2021
- Full Text
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6. Structural dynamics in proteins induced by and probed with X-ray free-electron laser pulses
- Author
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Nass, K, Gorel, A, Abdullah, MM, Martin, A, Kloos, M, Marinelli, A, Aquila, A, Barends, TRM, Decker, F-J, Doak, RB, Foucar, L, Hartmann, E, Hilpert, M, Hunter, MS, Jurek, Z, Koglin, JE, Kozlov, A, Lutman, AA, Kovacs, GN, Roome, CM, Shoeman, RL, Santra, R, Quiney, HM, Ziaja, B, Boutet, S, Schlichting, I, Nass, K, Gorel, A, Abdullah, MM, Martin, A, Kloos, M, Marinelli, A, Aquila, A, Barends, TRM, Decker, F-J, Doak, RB, Foucar, L, Hartmann, E, Hilpert, M, Hunter, MS, Jurek, Z, Koglin, JE, Kozlov, A, Lutman, AA, Kovacs, GN, Roome, CM, Shoeman, RL, Santra, R, Quiney, HM, Ziaja, B, Boutet, S, and Schlichting, I
- Abstract
X-ray free-electron lasers (XFELs) enable crystallographic structure determination beyond the limitations imposed upon synchrotron measurements by radiation damage. The need for very short XFEL pulses is relieved through gating of Bragg diffraction by loss of crystalline order as damage progresses, but not if ionization events are spatially non-uniform due to underlying elemental distributions, as in biological samples. Indeed, correlated movements of iron and sulfur ions were observed in XFEL-irradiated ferredoxin microcrystals using unusually long pulses of 80 fs. Here, we report a femtosecond time-resolved X-ray pump/X-ray probe experiment on protein nanocrystals. We observe changes in the protein backbone and aromatic residues as well as disulfide bridges. Simulations show that the latter's correlated structural dynamics are much slower than expected for the predicted high atomic charge states due to significant impact of ion caging and plasma electron screening. This indicates that dense-environment effects can strongly affect local radiation damage-induced structural dynamics.
- Published
- 2020
7. Impact of constitutional TET2 haploinsufficiency on molecular and clinical phenotype in humans
- Author
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Kaasinen, E. (Eevi), Kuismin, O. (Outi), Rajamäki, K. (Kristiina), Ristolainen, H. (Heikki), Aavikko, M. (Mervi), Kondelin, J. (Johanna), Saarinen, S. (Silva), Berta, D. G. (Davide G.), Katainen, R. (Riku), Hirvonen, E. A. (Elina A. M.), Karhu, A. (Auli), Taira, A. (Aurora), Tanskanen, T. (Tomas), Alkodsi, A. (Amjad), Taipale, M. (Minna), Morgunova, E. (Ekaterina), Franssila, K. (Kaarle), Lehtonen, R. (Rainer), Mäkinen, M. (Markus), Aittomäki, K. (Kristiina), Palotie, A. (Aarno), Kurki, M. I. (Mitja I.), Pietiläinen, O. (Olli), Hilpert, M. (Morgane), Saarentaus, E. (Elmo), Niinimäki, J. (Jaakko), Junttila, J. (Juhani), Kaikkonen, K. (Kari), Vahteristo, P. (Pia), Skoda, R. C. (Radek C.), Seppänen, M. R. (Mikko R. J.), Eklund, K. K. (Kari K.), Taipale, J. (Jussi), Kilpivaara, O. (Outi), Aaltonen, L. A. (Lauri A.), Kaasinen, E. (Eevi), Kuismin, O. (Outi), Rajamäki, K. (Kristiina), Ristolainen, H. (Heikki), Aavikko, M. (Mervi), Kondelin, J. (Johanna), Saarinen, S. (Silva), Berta, D. G. (Davide G.), Katainen, R. (Riku), Hirvonen, E. A. (Elina A. M.), Karhu, A. (Auli), Taira, A. (Aurora), Tanskanen, T. (Tomas), Alkodsi, A. (Amjad), Taipale, M. (Minna), Morgunova, E. (Ekaterina), Franssila, K. (Kaarle), Lehtonen, R. (Rainer), Mäkinen, M. (Markus), Aittomäki, K. (Kristiina), Palotie, A. (Aarno), Kurki, M. I. (Mitja I.), Pietiläinen, O. (Olli), Hilpert, M. (Morgane), Saarentaus, E. (Elmo), Niinimäki, J. (Jaakko), Junttila, J. (Juhani), Kaikkonen, K. (Kari), Vahteristo, P. (Pia), Skoda, R. C. (Radek C.), Seppänen, M. R. (Mikko R. J.), Eklund, K. K. (Kari K.), Taipale, J. (Jussi), Kilpivaara, O. (Outi), and Aaltonen, L. A. (Lauri A.)
- Abstract
Clonal hematopoiesis driven by somatic heterozygous TET2 loss is linked to malignant degeneration via consequent aberrant DNA methylation, and possibly to cardiovascular disease via increased cytokine and chemokine expression as reported in mice. Here, we discover a germline TET2 mutation in a lymphoma family. We observe neither unusual predisposition to atherosclerosis nor abnormal pro-inflammatory cytokine or chemokine expression. The latter finding is confirmed in cells from three additional unrelated TET2 germline mutation carriers. The TET2 defect elevates blood DNA methylation levels, especially at active enhancers and cell-type specific regulatory regions with binding sequences of master transcription factors involved in hematopoiesis. The regions display reduced methylation relative to all open chromatin regions in four DNMT3A germline mutation carriers, potentially due to TET2-mediated oxidation. Our findings provide insight into the interplay between epigenetic modulators and transcription factor activity in hematological neoplasia, but do not confirm the putative role of TET2 in atherosclerosis.
- Published
- 2019
8. Bacteriorhodopsin, dark state, cell 2, refined using the same protocol as sub-ps time delays
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, Barends, T.R.M., additional, and Schlichting, I., additional
- Published
- 2019
- Full Text
- View/download PDF
9. Bacteriorhodopsin, dark state, cell 2
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, Barends, T.R.M., additional, and Schlichting, I., additional
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- 2019
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10. BACTERIORHODOPSIN, 680 FS STATE, REAL-SPACE REFINED AGAINST 15% EXTRAPOLATED STRUCTURE FACTORS
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, and Schlichting, I., additional
- Published
- 2019
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11. BACTERIORHODOPSIN, 240FS STATE, REAL-SPACE REFINED AGAINST 10% EXTRAPOLATED MAP
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, and Schlichting, I., additional
- Published
- 2019
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12. BACTERIORHODOPSIN, 330 FS STATE, REAL-SPACE REFINED AGAINST 15% EXTRAPOLATED STRUCTURE FACTORS
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, and Schlichting, I., additional
- Published
- 2019
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13. BACTERIORHODOPSIN, 460 FS STATE, REAL-SPACE REFINED AGAINST 15% EXTRAPOLATED STRUCTURE FACTORS
- Author
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, and Schlichting, I., additional
- Published
- 2019
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14. BACTERIORHODOPSIN, 530 FS STATE, REAL-SPACE REFINED AGAINST 15% EXTRAPOLATED STRUCTURE FACTORS
- Author
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, and Schlichting, I., additional
- Published
- 2019
- Full Text
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15. Bacteriorhodopsin, dark state, cell 1
- Author
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, Barends, T.R.M., additional, and Schlichting, I., additional
- Published
- 2019
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16. BACTERIORHODOPSIN, 740 FS STATE, REAL-SPACE REFINED AGAINST 15% EXTRAPOLATED STRUCTURE FACTORS
- Author
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, and Schlichting, I., additional
- Published
- 2019
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17. Bacteriorhodopsin, 33 ms state, ensemble refinement
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, Barends, T.R.M., additional, and Schlichting, I., additional
- Published
- 2019
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18. Bacteriorhodopsin, 3 ps state, REAL-SPACE REFINEMED AGAINST 10% EXTRAPOLATED MAP
- Author
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, and Schlichting, I., additional
- Published
- 2019
- Full Text
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19. Bacteriorhodopsin, 1 ps state, real-space refined against 15% extrapolated map
- Author
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Nass Kovacs, G., primary, Colletier, J.-P., additional, Gruenbein, M.L., additional, Stensitzki, T., additional, Batyuk, A., additional, Carbajo, S., additional, Doak, R.B., additional, Ehrenberg, D., additional, Foucar, L., additional, Gasper, R., additional, Gorel, A., additional, Hilpert, M., additional, Kloos, M., additional, Koglin, J., additional, Reinstein, J., additional, Roome, C.M., additional, Schlesinger, R., additional, Seaberg, M., additional, Shoeman, R.L., additional, Stricker, M., additional, Boutet, S., additional, Haacke, S., additional, Heberle, J., additional, Domratcheva, T., additional, and Schlichting, I., additional
- Published
- 2019
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20. Gasoline Vapor Emissions during Vehicle Refueling Events, New York City
- Author
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Shearston J and Hilpert M
- Subjects
Global and Planetary Change ,Waste management ,Epidemiology ,Health, Toxicology and Mutagenesis ,Public Health, Environmental and Occupational Health ,Environmental science ,Gasoline ,Pollution - Published
- 2019
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21. Human carbonmonoxy hemoglobin SFX dataset
- Author
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Doak, B., primary, Gorel, A., additional, Foucar, L., additional, Barends, T.R.M., additional, Gruenbein, M.L., additional, Hilpert, M., additional, Kloos, M., additional, Nass Kovacs, G., additional, Roome, C.M., additional, Shoeman, R.L., additional, Stricker, M., additional, Tono, K., additional, You, D., additional, Ueda, K., additional, Sherrell, D.A., additional, Owen, R.L., additional, and Schlichting, I., additional
- Published
- 2018
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22. Lysozyme structure determined from SFX data using a Sheet-on-Sheet chipless chip
- Author
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Doak, R.B., primary, Gorel, A., additional, Foucar, L., additional, Gruenbein, M.L., additional, Hilpert, M., additional, Kloos, M., additional, Nass Kovacs, G., additional, Roome, C., additional, Shoeman, R.L., additional, Stricker, M., additional, Tono, K., additional, You, D., additional, Ueda, K., additional, Sherrel, D., additional, Owen, R., additional, Barends, T.R.M., additional, and Schlichting, I., additional
- Published
- 2018
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23. Hen egg-white lysozyme structure determined with data from the EuXFEL, 9.22 keV photon energy
- Author
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Gruenbein, M.L., primary, Gorel, A., additional, Stricker, M., additional, Bean, R., additional, Bielecki, J., additional, Doerner, K., additional, Hartmann, E., additional, Hilpert, M., additional, Kloos, M., additional, Letrun, R., additional, Sztuk-Dambietz, J., additional, Mancuso, A., additional, Meserschmidt, M., additional, Nass-Kovacs, G., additional, Ramilli, M., additional, Roome, C.M., additional, Sato, T., additional, Doak, R.B., additional, Shoeman, R.L., additional, Foucar, L., additional, Colletier, J.P., additional, Barends, T.R.M., additional, Stan, C., additional, and Schlichting, I., additional
- Published
- 2018
- Full Text
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24. Concanavalin B structure determined with data from the EuXFEL, the first MHz free electron laser
- Author
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Gruenbein, M.L., primary, Gorel, A., additional, Stricker, M., additional, Bean, R., additional, Bielecki, J., additional, Doerner, K., additional, Hartmann, E., additional, Hilpert, M., additional, Kloos, M., additional, Letrun, R., additional, Sztuk-Dambietz, J., additional, Mancuso, A., additional, Meserschmidt, M., additional, Nass-Kovacs, G., additional, Ramilli, M., additional, Roome, C.M., additional, Sato, T., additional, Doak, R.B., additional, Shoeman, R.L., additional, Foucar, L., additional, Colletier, J.P., additional, Barends, T.R.M., additional, Stan, C., additional, and Schlichting, I., additional
- Published
- 2018
- Full Text
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25. Hen egg-white lysozyme structure determined with data from the EuXFEL, the first MHz free electron laser, 7.47 keV photon energy
- Author
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Gruenbein, M.L., primary, Gorel, A., additional, Stricker, M., additional, Bean, R., additional, Bielecki, J., additional, Doerner, K., additional, Hartmann, E., additional, Hilpert, M., additional, Kloos, M., additional, Letrun, R., additional, Sztuk-Dambietz, J., additional, Mancuso, A., additional, Meserschmidt, M., additional, Nass-Kovacs, G., additional, Ramilli, M., additional, Roome, C.M., additional, Sato, T., additional, Doak, R.B., additional, Shoeman, R.L., additional, Foucar, L., additional, Colletier, J.P., additional, Barends, T.R.M., additional, Stan, C., additional, and Schlichting, I., additional
- Published
- 2018
- Full Text
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26. Concanavalin A structure determined with data from the EuXFEL, the first MHz free electron laser
- Author
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Gruenbein, M.L., primary, Gorel, A., additional, Stricker, M., additional, Bean, R., additional, Bielecki, J., additional, Doerner, K., additional, Hartmann, E., additional, Hilpert, M., additional, Kloos, M., additional, Letrun, R., additional, Sztuk-Dambietz, J., additional, Mancuso, A., additional, Meserschmidt, M., additional, Nass-Kovacs, G., additional, Ramilli, M., additional, Roome, C.M., additional, Sato, T., additional, Doak, R.B., additional, Shoeman, R.L., additional, Foucar, L., additional, Colletier, J.P., additional, Barends, T.R.M., additional, Stan, C., additional, and Schlichting, I., additional
- Published
- 2018
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27. Why Variant Colloid Transport Behaviors Emerge among Identical Individuals in Porous Media When Colloid–Surface Repulsion Exists
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Johnson, W. P., primary, Rasmuson, A., additional, Pazmiño, E., additional, and Hilpert, M., additional
- Published
- 2018
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28. Difference-refined excited-state structure of rsEGFP2 1ps following 400nm-laser irradiation of the off-state.
- Author
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Coquelle, N., primary, Sliwa, M., additional, Woodhouse, J., additional, Schiro, G., additional, Adam, V., additional, Aquila, A., additional, Barends, T.R.M., additional, Boutet, S., additional, Byrdin, M., additional, Carbajo, S., additional, De la Mora, E., additional, Doak, R.B., additional, Feliks, M., additional, Fieschi, F., additional, Foucar, L., additional, Guillon, V., additional, Hilpert, M., additional, Hunter, M., additional, Jakobs, S., additional, Koglin, J.E., additional, Kovacsova, G., additional, Lane, T.J., additional, Levy, B., additional, Liang, M., additional, Nass, K., additional, Ridard, J., additional, Robinson, J.S., additional, Roome, C.M., additional, Ruckebusch, C., additional, Seaberg, M., additional, Thepaut, M., additional, Cammarata, M., additional, Demachy, I., additional, Field, M., additional, Shoeman, R.L., additional, Bourgeois, D., additional, Colletier, J.P., additional, Schlichting, I., additional, and Weik, M., additional
- Published
- 2018
- Full Text
- View/download PDF
29. Crystal Structure of rsEGFP2 in the fluorescent on-state determined by SFX
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Coquelle, N., primary, Sliwa, M., additional, Woodhouse, J., additional, Schiro, G., additional, Adam, V., additional, Aquila, A., additional, Barends, T.R.M., additional, Boutet, S., additional, Byrdin, M., additional, Carbajo, S., additional, De la Mora, E., additional, Doak, R.B., additional, Feliks, M., additional, Fieschi, F., additional, Foucar, L., additional, Guillon, V., additional, Hilpert, M., additional, Hunter, M., additional, Jakobs, S., additional, Koglin, J.E., additional, Kovacsova, G., additional, Lane, T.J., additional, Levy, B., additional, Liang, M., additional, Nass, K., additional, Ridard, J., additional, Robinson, J.S., additional, Roome, C.M., additional, Ruckebusch, C., additional, Seaberg, M., additional, Thepaut, M., additional, Cammarata, M., additional, Demachy, I., additional, Field, M., additional, Shoeman, R.L., additional, Bourgeois, D., additional, Colletier, J.P., additional, Schlichting, I., additional, and Weik, M., additional
- Published
- 2017
- Full Text
- View/download PDF
30. Composite structure of rsEGFP2 1ps following 400nm-laser irradiation of the off-state.
- Author
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Coquelle, N., primary, Sliwa, M., additional, Woodhouse, J., additional, Schiro, G., additional, Adam, V., additional, Aquila, A., additional, Barends, T.R.M., additional, Boutet, S., additional, Byrdin, M., additional, Carbajo, S., additional, De la Mora, E., additional, Doak, R.B., additional, Feliks, M., additional, Fieschi, F., additional, Foucar, L., additional, Guillon, V., additional, Hilpert, M., additional, Hunter, M., additional, Jakobs, S., additional, Koglin, J.E., additional, Kovacsova, G., additional, Lane, T.J., additional, Levy, B., additional, Liang, M., additional, Nass, K., additional, Ridard, J., additional, Robinson, J.S., additional, Roome, C.M., additional, Ruckebusch, C., additional, Seaberg, M., additional, Thepaut, M., additional, Cammarata, M., additional, Demachy, I., additional, Field, M., additional, Shoeman, R.L., additional, Bourgeois, D., additional, Colletier, J.P., additional, Schlichting, I., additional, and Weik, M., additional
- Published
- 2017
- Full Text
- View/download PDF
31. Crystal Structure of rsEGFP2 in the non-fluorescent off-state determined by SFX
- Author
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Coquelle, N., primary, Sliwa, M., additional, Woodhouse, J., additional, Schiro, G., additional, Adam, V., additional, Aquila, A., additional, Barends, T.R.M., additional, Boutet, S., additional, Byrdin, M., additional, Carbajo, S., additional, De la Mora, E., additional, Doak, R.B., additional, Feliks, M., additional, Fieschi, F., additional, Foucar, L., additional, Guillon, V., additional, Hilpert, M., additional, Hunter, M., additional, Jakobs, S., additional, Koglin, J.E., additional, Kovacsova, G., additional, Lane, T.J., additional, Levy, B., additional, Liang, M., additional, Nass, K., additional, Ridard, J., additional, Robinson, J.S., additional, Roome, C.M., additional, Ruckebusch, C., additional, Seaberg, M., additional, Thepaut, M., additional, Cammarata, M., additional, Demachy, I., additional, Field, M., additional, Shoeman, R.L., additional, Bourgeois, D., additional, Colletier, J.P., additional, Schlichting, I., additional, and Weik, M., additional
- Published
- 2017
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32. Two phonological rarities in Ingrian dialects
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Hilpert, M., Duke, J., Mertzlufft, Ch., Östman, J.-O., Rießler, M., Kuznetsova, Natalia, Kuznetsova, Natalia (ORCID:0000-0002-3679-4717), Hilpert, M., Duke, J., Mertzlufft, Ch., Östman, J.-O., Rießler, M., Kuznetsova, Natalia, and Kuznetsova, Natalia (ORCID:0000-0002-3679-4717)
- Abstract
The paper considers two typologically rare phonological phenomena related to the development of sound lengthening and reduction that appear in two dialects of the severely endangered Ingrian language in North-Western Russia. The first is attested in the Soikkola dialect, and involves a phonological ternary quantity contrast of consonants. The second exists in the Lower Luga dialect, and involves a phonological opposition of full modal and reduced voiceless vowels. First, brief phonetic, phonological and typological profiles of these contrasts are given. Furthermore, I analyze their probable further evolution against the typological background of similar phenomena in genetically related and unrelated languages. In the end, I discuss the question of stability and maintenance forces of these contrasts, as well as their significance in light of general prosodic development of the Soikkola and Lower Luga dialects.
- Published
- 2015
33. Ultrafast dynamics in myoglobin: 0.6 ps time delay
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Barends, T.R.M., primary, Foucar, L., additional, Ardevol, A., additional, Nass, K.J., additional, Aquila, A., additional, Botha, S., additional, Doak, R.B., additional, Falahati, K., additional, Hartmann, E., additional, Hilpert, M., additional, Heinz, M., additional, Hoffmann, M.C., additional, Koefinger, J., additional, Koglin, J., additional, Kovacsova, G., additional, Liang, M., additional, Milathianaki, D., additional, Lemke, H.T., additional, Reinstein, J., additional, Roome, C.M., additional, Shoeman, R.L., additional, Williams, G.J., additional, Burghardt, I., additional, Hummer, G., additional, Boutet, S., additional, and Schlichting, I., additional
- Published
- 2015
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- View/download PDF
34. Ultrafast dynamics in myoglobin: dark-state, CO-ligated structure
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Barends, T.R.M., primary, Foucar, L., additional, Ardevol, A., additional, Nass, K.J., additional, Aquila, A., additional, Botha, S., additional, Doak, R.B., additional, Falahati, K., additional, Hartmann, E., additional, Hilpert, M., additional, Heinz, M., additional, Hoffmann, M.C., additional, Koefinger, J., additional, Koglin, J., additional, Kovacsova, G., additional, Liang, M., additional, Milathianaki, D., additional, Lemke, H.T., additional, Reinstein, J., additional, Roome, C.M., additional, Shoeman, R.L., additional, Williams, G.J., additional, Burghardt, I., additional, Hummer, G., additional, Boutet, S., additional, and Schlichting, I., additional
- Published
- 2015
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- View/download PDF
35. Ultrafast dynamics in myoglobin: 50 ps time delay
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Barends, T.R.M., primary, Foucar, L., additional, Ardevol, A., additional, Nass, K.J., additional, Aquila, A., additional, Botha, S., additional, Doak, R.B., additional, Falahati, K., additional, Hartmann, E., additional, Hilpert, M., additional, Heinz, M., additional, Hoffmann, M.C., additional, Koefinger, J., additional, Koglin, J., additional, Kovacsova, G., additional, Liang, M., additional, Milathianaki, D., additional, Lemke, H.T., additional, Reinstein, J., additional, Roome, C.M., additional, Shoeman, R.L., additional, Williams, G.J., additional, Burghardt, I., additional, Hummer, G., additional, Boutet, S., additional, and Schlichting, I., additional
- Published
- 2015
- Full Text
- View/download PDF
36. Ultrafast dynamics in myoglobin: 3 ps time delay
- Author
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Barends, T.R.M., primary, Foucar, L., additional, Ardevol, A., additional, Nass, K.J., additional, Aquila, A., additional, Botha, S., additional, Doak, R.B., additional, Falahati, K., additional, Hartmann, E., additional, Hilpert, M., additional, Heinz, M., additional, Hoffmann, M.C., additional, Koefinger, J., additional, Koglin, J., additional, Kovacsova, G., additional, Liang, M., additional, Milathianaki, D., additional, Lemke, H.T., additional, Reinstein, J., additional, Roome, C.M., additional, Shoeman, R.L., additional, Williams, G.J., additional, Burghardt, I., additional, Hummer, G., additional, Boutet, S., additional, and Schlichting, I., additional
- Published
- 2015
- Full Text
- View/download PDF
37. ultrafast dynamics in myoglobin: 150 ps time delay
- Author
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Barends, T.R.M., primary, Foucar, L., additional, Ardevol, A., additional, Nass, K., additional, Aquila, A., additional, Botha, S., additional, Doak, R.B., additional, Falahati, K., additional, Hartmann, E., additional, Hilpert, M., additional, Heinz, M., additional, Hoffmann, M., additional, Koefinger, J., additional, Koglin, J., additional, Kovacsova, G., additional, Liang, M., additional, Milathianaki, D., additional, Lemke, H.T., additional, Reinstein, J., additional, Roome, C.M., additional, Shoeman, R.L., additional, Williams, G.J., additional, Burghardt, I., additional, Hummer, G., additional, Boutet, S., additional, and Schlichting, I., additional
- Published
- 2015
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- View/download PDF
38. Neue hybride Systematik zum Retrofit komplexer destillativer Trennprozesse
- Author
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Hilpert, M., primary, Lorenz, H.-M., additional, and Repke, J.-U., additional
- Published
- 2015
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39. Ian Roberts. 2017. The Wonders of Language. Or How to Make Noises and Influence People. Cambridge: Cambridge University Press. 230 S.
- Author
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Hilpert Martin
- Subjects
Germanic languages. Scandinavian languages ,PD1-7159 - Published
- 2017
- Full Text
- View/download PDF
40. Contributions to the computational processing of diachronic linguistic corpora
- Author
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Cunha, E. Landulfo Teixeira Paradela, Adelaar, W.F.H., Almeida, V.A.F., Wichmann, S.K., Klamer, M.A.F., Prokić, J., Burger, P., Boer, B. de, Hilpert, M., and Leiden University
- Subjects
Corpus linguistics ,Computational methods in linguistics ,Algorithms for historical linguistics ,Fake news ,Diachronic studies ,Comments from news portals and websites ,InformationSystems_INFORMATIONSTORAGEANDRETRIEVAL ,Corpus building and compilation ,Computer-assisted linguistics - Abstract
Computer-assisted corpus linguistics is one of the main points of convergence between linguistic and computational methods. In particular, the use of diachronic linguistic corpora provides opportunities for the quantitative analysis of phenomena concerning language change through time. This dissertation offers contributions to three of the stages of the research involving diachronic corpora: (a) corpus building and compilation; (b) designing of tools and algorithms for data exploration; and (c) data analysis for linguistic, cultural and historical research. Two resources are first presented: a Web scraper of comments from news portals; and a diachronic corpus composed of comments published in a news website. Then, I propose a generalizable method to assist in the identification of periods of establishment and obsolescence of linguistic items in a diachronic corpus based on the frequency of these items in the corpus. This method may be employed for the analysis of any collection of linguistic items, regardless of language or historical period. Finally, I describe how diachronic corpora might be used for quantitative linguistic investigation by proposing a framework centered on the investigation of vocabulary through a diachronic approach, and demonstrate its applicability by analyzing the use of the term 'fake news' in the media.
- Published
- 2020
41. Variation in the Impact of New York on Pause on Traffic Congestion by Racialized Economic Segregation and Environmental Burden.
- Author
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Shearston JA, Saxena R, Casey JA, Kioumourtzoglou MA, and Hilpert M
- Abstract
During the 2019 coronavirus pandemic, stay-at-home policies such as New York's (NY) NY on Pause dramatically reduced traffic congestion. Despite high traffic burden in NY's environmental justice communities, this reduction has not been evaluated through an environmental justice lens-our objective in this analysis. We obtained census tract-level traffic congestion data from Google traffic maps hourly for 2018-2020. We defined congestion as the percent of streets in a census tract with heavy traffic (red- or maroon-color). We used the Index of Concentration at the Extremes (ICE) to measure racialized economic segregation and the CDC's Environmental Justice Index (EJI) as a measure of combined environmental, social, and chronic disease burden. We divided census tracts into quintiles of ICE and EJI and used linear mixed models stratified by ICE and EJI quintile in an interrupted time series design. Prior to NY on Pause, less marginalized and burdened census tracts (Q5) tended to have higher levels of traffic congestion; during NY on Pause, this trend reversed. For both ICE and EJI, more marginalized and burdened (Q1-Q2 vs. Q4-Q5) tracts had smaller absolute decreases in percent traffic congestion. For example, percent traffic congestion in ICE Q5 decreased by 7.8% (% change: -36.6%), but in Q1, it decreased by 4.2% (% change: -51.7%). NY on Pause, while protecting residents during COVID-19, may have resulted in inequitable reductions in traffic congestion. It is critical that such inequities are measured and acknowledged so that future policies to reduce traffic congestion and respond to pandemics can enhance equity., Competing Interests: The authors declare no conflicts of interest relevant to this study., (© 2024 The Author(s). GeoHealth published by Wiley Periodicals LLC on behalf of American Geophysical Union.)
- Published
- 2024
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- View/download PDF
42. Functional and Structural Characterization of Clinical-Stage Janus Kinase 2 Inhibitors Identifies Determinants for Drug Selectivity.
- Author
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Miao Y, Virtanen A, Zmajkovic J, Hilpert M, Skoda RC, Silvennoinen O, and Haikarainen T
- Subjects
- Humans, Binding Sites, Models, Molecular, Pyrazoles chemistry, Pyrazoles pharmacology, Pyrazoles chemical synthesis, Pyrimidines chemistry, Pyrimidines pharmacology, Pyrimidines chemical synthesis, Structure-Activity Relationship, Thermodynamics, Adenosine Triphosphate chemistry, Adenosine Triphosphate pharmacology, Janus Kinase 2 antagonists & inhibitors, Janus Kinase 2 metabolism, Janus Kinase 2 chemistry, Protein Kinase Inhibitors pharmacology, Protein Kinase Inhibitors chemistry
- Abstract
Janus kinase 2 (JAK2) plays a critical role in orchestrating hematopoiesis, and its deregulation leads to various blood disorders, most importantly myeloproliferative neoplasms (MPNs). Ruxolitinib, fedratinib, momelotinib, and pacritinib are FDA-/EMA-approved JAK inhibitors effective in relieving symptoms in MPN patients but show variable clinical profiles due to poor JAK selectivity. The development of next-generation JAK2 inhibitors is hampered by the lack of comparative functional analysis and knowledge of the molecular basis of their selectivity. Here, we provide mechanistic profiling of the four approved and six clinical-stage JAK2 inhibitors and connect selectivity data with high-resolution structural and thermodynamic analyses. All of the JAK inhibitors potently inhibited JAK2 activity. Inhibitors differed in their JAK isoform selectivity and potency for erythropoietin signaling, but their general cytokine inhibition signatures in blood cells were comparable. Structural data indicate that high potency and moderate JAK2 selectivity can be obtained by targeting the front pocket of the adenosine 5'-triphosphate-binding site.
- Published
- 2024
- Full Text
- View/download PDF
43. Corpus linguistics meets historical linguistics and construction grammar: how far have we come, and where do we go from here?
- Author
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Hilpert M
- Abstract
This paper aims to give an overview of corpus-based research that investigates processes of language change from the theoretical perspective of Construction Grammar. Starting in the early 2000s, a dynamic community of researchers has come together in order to contribute to this effort. Among the different lines of work that have characterized this enterprise, this paper discusses the respective roles of qualitative approaches, diachronic collostructional analysis, multivariate techniques, distributional semantic models, and analyses of network structure. The paper tries to contextualize these approaches and to offer pointers for future research., (© 2024 Walter de Gruyter GmbH, Berlin/Boston.)
- Published
- 2024
- Full Text
- View/download PDF
44. Influence of pump laser fluence on ultrafast myoglobin structural dynamics.
- Author
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Barends TRM, Gorel A, Bhattacharyya S, Schirò G, Bacellar C, Cirelli C, Colletier JP, Foucar L, Grünbein ML, Hartmann E, Hilpert M, Holton JM, Johnson PJM, Kloos M, Knopp G, Marekha B, Nass K, Nass Kovacs G, Ozerov D, Stricker M, Weik M, Doak RB, Shoeman RL, Milne CJ, Huix-Rotllant M, Cammarata M, and Schlichting I
- Subjects
- Crystallography instrumentation, Crystallography methods, Electrons, Photons, Protein Conformation radiation effects, Quantum Theory, X-Rays, Artifacts, Lasers, Myoglobin chemistry, Myoglobin metabolism, Myoglobin radiation effects
- Abstract
High-intensity femtosecond pulses from an X-ray free-electron laser enable pump-probe experiments for the investigation of electronic and nuclear changes during light-induced reactions. On timescales ranging from femtoseconds to milliseconds and for a variety of biological systems, time-resolved serial femtosecond crystallography (TR-SFX) has provided detailed structural data for light-induced isomerization, breakage or formation of chemical bonds and electron transfer
1,2 . However, all ultrafast TR-SFX studies to date have employed such high pump laser energies that nominally several photons were absorbed per chromophore3-17 . As multiphoton absorption may force the protein response into non-physiological pathways, it is of great concern18,19 whether this experimental approach20 allows valid conclusions to be drawn vis-à-vis biologically relevant single-photon-induced reactions18,19 . Here we describe ultrafast pump-probe SFX experiments on the photodissociation of carboxymyoglobin, showing that different pump laser fluences yield markedly different results. In particular, the dynamics of structural changes and observed indicators of the mechanistically important coherent oscillations of the Fe-CO bond distance (predicted by recent quantum wavepacket dynamics21 ) are seen to depend strongly on pump laser energy, in line with quantum chemical analysis. Our results confirm both the feasibility and necessity of performing ultrafast TR-SFX pump-probe experiments in the linear photoexcitation regime. We consider this to be a starting point for reassessing both the design and the interpretation of ultrafast TR-SFX pump-probe experiments20 such that mechanistically relevant insight emerges., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
45. Fine particulate matter composition in American Indian vs. Non-American Indian communities.
- Author
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Li M, Do V, Brooks JL, Hilpert M, Goldsmith J, Chillrud SN, Ali T, Best LG, Yracheta J, Umans JG, van Donkelaar A, Martin RV, Navas-Acien A, and Kioumourtzoglou MA
- Subjects
- Humans, United States, Air Pollution analysis, Environmental Exposure analysis, Environmental Monitoring, Particulate Matter analysis, Air Pollutants analysis, Indians, North American
- Abstract
Background: Fine particulate matter (PM
2.5 ) exposure is a known risk factor for numerous adverse health outcomes, with varying estimates of component-specific effects. Populations with compromised health conditions such as diabetes can be more sensitive to the health impacts of air pollution exposure. Recent trends in PM2.5 in primarily American Indian- (AI-) populated areas examined in previous work declined more gradually compared to the declines observed in the rest of the US. To further investigate components contributing to these findings, we compared trends in concentrations of six PM2.5 components in AI- vs. non-AI-populated counties over time (2000-2017) in the contiguous US., Methods: We implemented component-specific linear mixed models to estimate differences in annual county-level concentrations of sulfate, nitrate, ammonium, organic matter, black carbon, and mineral dust from well-validated surface PM2.5 models in AI- vs. non-AI-populated counties, using a multi-criteria approach to classify counties as AI- or non-AI-populated. Models adjusted for population density and median household income. We included interaction terms with calendar year to estimate whether concentration differences in AI- vs. non-AI-populated counties varied over time., Results: Our final analysis included 3108 counties, with 199 (6.4%) classified as AI-populated. On average across the study period, adjusted concentrations of all six PM2.5 components in AI-populated counties were significantly lower than in non-AI-populated counties. However, component-specific levels in AI- vs. non-AI-populated counties varied over time: sulfate and ammonium levels were significantly lower in AI- vs. non-AI-populated counties before 2011 but higher after 2011 and nitrate levels were consistently lower in AI-populated counties., Conclusions: This study indicates time trend differences of specific components by AI-populated county type. Notably, decreases in sulfate and ammonium may contribute to steeper declines in total PM2.5 in non-AI vs. AI-populated counties. These findings provide potential directives for additional monitoring and regulations of key emissions sources impacting tribal lands., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)- Published
- 2023
- Full Text
- View/download PDF
46. Exposure to metals among Electronic Nicotine Delivery System (ENDS) users in the PATH study: A longitudinal analysis.
- Author
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Kaplan B, Navas-Acien A, Rule AM, Hilpert M, and Cohen JE
- Subjects
- Cadmium, Lead, Longitudinal Studies, Carcinogens, Electronic Nicotine Delivery Systems, Tobacco Products
- Abstract
Background: Few studies have evaluated Electronic Nicotine Delivery Systems (ENDS) in longitudinal studies, as a potential source of metals which may have carcinogenic, neurotoxic, and cardiotoxic effects. We evaluated metal body burden by ENDS use status in a longitudinal population-based national survey., Methods: We used the Population Assessment of Tobacco and Health (PATH) Study wave 1 (2013-2014), wave 2 (2014-2015), and wave 3 (2015-2016) adult data to assess urinary concentrations of seven metals among (1) ENDS only users who never used any nonelectronic tobacco products (n = 50), (2) ENDS only users who were former users of any nonelectronic tobacco products (n = 123) and (3) Never users (n = 1501) of any tobacco product., Results: Among ENDS only users who never used any nonelectronic tobacco products (n = 50), the geometric mean ratios (GMRs) of Cd and Pb were 1.25 (95%CI: 1.09-1.42) and 1.19 (95%CI: 1.05-1.34), respectively, compared to never users after adjustment for PATH Study wave, age, sex, race/ethnicity, education, region, secondhand smoke at home and work, and cannabis and other substance use. After the same adjustment, the corresponding GMRs were 1.48 (95%CI: 1.32-1.67) and 1.43 (95%CI: 1.28-1.60) for ENDS only users who were former users of any nonelectronic tobacco products (n = 123). No difference was observed in urinary concentrations of other metals comparing ENDS users to never users of any tobacco product., Discussion: ENDS users show higher urinary levels of Cd and Pb, including lifetime exclusive ENDS users compared to never users of any tobacco product. These findings are limited by the small sample size and could be related to underreporting of past combustible tobacco use or other factors. Metals typical of ENDS such as nickel and chromium unfortunately are not available in PATH. Studies assessing metal exposure associated with long term lifetime exclusive ENDS use (≥5 years) with larger sample size are needed., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
47. Can traffic-related air pollution trigger myocardial infarction within a few hours of exposure? Identifying hourly hazard periods.
- Author
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Shearston JA, Rowland ST, Butt T, Chillrud SN, Casey JA, Edmondson D, Hilpert M, and Kioumourtzoglou MA
- Subjects
- Humans, Nitrogen Dioxide adverse effects, Nitrogen Dioxide analysis, Cross-Over Studies, Environmental Exposure adverse effects, Environmental Exposure analysis, Particulate Matter analysis, Air Pollutants analysis, Air Pollution adverse effects, Air Pollution analysis, Myocardial Infarction etiology, Myocardial Infarction chemically induced
- Abstract
Introduction: Traffic-related air pollution can trigger myocardial infarction (MI). However, the hourly hazard period of exposure to nitrogen dioxide (NO
2 ), a common traffic tracer, for incident MI has not been fully evaluated. Thus, the current hourly US national air quality standard (100 ppb) is based on limited hourly-level effect estimates, which may not adequately protect cardiovascular health., Objectives: We characterized the hourly hazard period of NO2 exposure for MI in New York state (NYS), USA, from 2000 to 2015., Methods: For nine cities in NYS, we obtained data on MI hospitalizations from the NYS Department of Health Statewide Planning and Research Cooperative System and hourly NO2 concentrations from the US Environmental Protection Agency's Air Quality System database. We used city-wide exposures and a case-crossover study design with distributed lag non-linear terms to assess the relationship between hourly NO2 concentrations over 24 h and MI, adjusting for hourly temperature and relative humidity., Results: The mean NO2 concentration was 23.2 ppb (standard deviation: 12.6 ppb). In the six hours preceding MI, we found linearly increased risk with increasing NO2 concentrations. At lag hour 0, a 10 ppb increase in NO2 was associated with 0.2 % increased risk of MI (Rate Ratio [RR]: 1.002; 95 % Confidence Interval [CI]: 1.000, 1.004). We estimated a cumulative RR of 1.015 (95 % CI: 1.008, 1.021) for all 24 lag hours per 10 ppb increase in NO2 . Lag hours 2-3 had consistently elevated risk ratios in sensitivity analyses., Conclusions: We found robust associations between hourly NO2 exposure and MI risk at concentrations far lower than current hourly NO2 national standards. Risk of MI was most elevated in the six hours after exposure, consistent with prior studies and experimental work evaluating physiologic responses after acute traffic exposure. Our findings suggest that current hourly standards may be insufficient to protect cardiovascular health., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2023
- Full Text
- View/download PDF
48. Evaluation of expanded peripheral blood derived CD34+ cells for the treatment of moderate knee osteoarthritis.
- Author
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Vignon C, Hilpert M, Toupet K, Goubaud A, Noël D, de Kalbermatten M, Hénon P, Jorgensen C, Barbero A, and Garitaonandia I
- Abstract
Knee osteoarthritis (OA) is a degenerative joint disease of the knee that results from the progressive loss of articular cartilage. It is most common in the elderly and affects millions of people worldwide, leading to a continuous increase in the number of total knee replacement surgeries. These surgeries improve the patient's physical mobility, but can lead to late infection, loosening of the prosthesis, and persistent pain. We would like to investigate if cell-based therapies can avoid or delay such surgeries in patients with moderate OA by injecting expanded autologous peripheral blood derived CD34+ cells (ProtheraCytes
® ) into the articular joint. In this study we evaluated the survival of ProtheraCytes® when exposed to synovial fluid and their performance in vitro with a model consisting of their co-culture with human OA chondrocytes in separate layers of Transwells and in vivo with a murine model of OA. Here we show that ProtheraCytes® maintain high viability (>95%) when exposed for up to 96 hours to synovial fluid from OA patients. Additionally, when co-cultured with OA chondrocytes, ProtheraCytes® can modulate the expression of some chondrogenic (collagen II and Sox9) and inflammatory/degrading (IL1β, TNF, and MMP-13) markers at gene or protein levels. Finally, ProtheraCytes® survive after injection into the knee of a collagenase-induced osteoarthritis mouse model, engrafting mainly in the synovial membrane, probably due to the fact that ProtheraCytes® express CD44, a receptor of hyaluronic acid, which is abundantly present in the synovial membrane. This report provides preliminary evidence of the therapeutic potential of CD34+ cells on OA chondrocytes in vitro and their survival after in vivo implantation in the knee of mice and merits further investigation in future preclinical studies in OA models., Competing Interests: CV, AG, MK, PH, and IG were employees and stockholders of CellProthera. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Vignon, Hilpert, Toupet, Goubaud, Noël, de Kalbermatten, Hénon, Jorgensen, Barbero and Garitaonandia.)- Published
- 2023
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49. Human 3D nucleus pulposus microtissue model to evaluate the potential of pre-conditioned nasal chondrocytes for the repair of degenerated intervertebral disc.
- Author
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Kasamkattil J, Gryadunova A, Schmid R, Gay-Dujak MHP, Dasen B, Hilpert M, Pelttari K, Martin I, Schären S, Barbero A, Krupkova O, and Mehrkens A
- Abstract
Introduction: An in vitro model that appropriately recapitulates the degenerative disc disease (DDD) microenvironment is needed to explore clinically relevant cell-based therapeutic strategies for early-stage degenerative disc disease. We developed an advanced 3D nucleus pulposus (NP) microtissues (µT) model generated with cells isolated from human degenerating NP tissue (Pfirrmann grade: 2-3), which were exposed to hypoxia, low glucose, acidity and low-grade inflammation. This model was then used to test the performance of nasal chondrocytes (NC) suspension or spheroids (NCS) after pre-conditioning with drugs known to exert anti-inflammatory or anabolic activities. Methods: NPµTs were formed by i) spheroids generated with NP cells (NPS) alone or in combination with ii) NCS or iii) NC suspension and cultured in healthy or degenerative disc disease condition. Anti-inflammatory and anabolic drugs (amiloride, celecoxib, metformin, IL-1Ra, GDF-5) were used for pre-conditioning of NC/NCS. The effects of pre-conditioning were tested in 2D, 3D, and degenerative NPµT model. Histological, biochemical, and gene expression analysis were performed to assess matrix content (glycosaminoglycans, type I and II collagen), production and release of inflammatory/catabolic factors (IL-6, IL-8, MMP-3, MMP-13) and cell viability (cleaved caspase 3). Results: The degenerative NPµT contained less glycosaminoglycans, collagens, and released higher levels of IL-8 compared to the healthy NPµT. In the degenerative NPµT, NCS performed superior compared to NC cell suspension but still showed lower viability. Among the different compounds tested, only IL-1Ra pre-conditioning inhibited the expression of inflammatory/catabolic mediators and promoted glycosaminoglycan accumulation in NC/NCS in DDD microenvironment. In degenerative NPµT model, preconditioning of NCS with IL-1Ra also provided superior anti-inflammatory/catabolic activity compared to non-preconditioned NCS. Conclusion: The degenerative NPµT model is suitable to study the responses of therapeutic cells to microenvironment mimicking early-stage degenerative disc disease. In particular, we showed that NC in spheroidal organization as compared to NC cell suspension exhibited superior regenerative performance and that IL-1Ra pre-conditioning of NCS could further improve their ability to counteract inflammation/catabolism and support new matrix production within harsh degenerative disc disease microenvironment. Studies in an orthotopic in vivo model are necessary to assess the clinical relevance of our findings in the context of IVD repair., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Kasamkattil, Gryadunova, Schmid, Gay-Dujak, Dasen, Hilpert, Pelttari, Martin, Schären, Barbero, Krupkova and Mehrkens.)
- Published
- 2023
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50. Quantifying diurnal changes in NO 2 due to COVID-19 stay-at-home orders in New York City.
- Author
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Shearston JA, Cerna-Turoff I, Hilpert M, and Kioumourtzoglou MA
- Abstract
Introduction: Policy responses to the COVID-19 pandemic, such as the NY on Pause stay-at-home order (March 22 - June 8, 2020), substantially reduced traffic and traffic-related air pollution (TRAP) in New York City (NYC). We evaluated the magnitude of TRAP decreases and examined the role of modifying factors such as weekend/weekday, road proximity, location, and time-of-day., Methods: Hourly nitrogen dioxide (NO
2 ) concentrations from January 1, 2018 through June 8, 2020 were obtained from the Environmental Protection Agency's Air Quality System for all six hourly monitors in the NYC area. We used an interrupted time series design to determine the impact of NY on Pause on NO2 concentrations, using a mixed effects model with random intercepts for monitor location, adjusted for meteorology and long-term trends. We evaluated effect modification through stratification., Results: NO2 concentrations decreased during NY on Pause by 19% (-3.2 ppb, 95% confidence interval [CI]: -3.5, -3.0), on average, compared to pre-Pause time trends. We found no evidence for modification by weekend/weekday, but greater decreases in NO2 at non-roadside monitors and weak evidence for modification by location. For time-of-day, we found the largest decreases for 5 am (27%, -4.5 ppb, 95% CI: -5.7, -3.3) through 7 am (24%, -4.0 ppb, 95% CI: -5.2, -2.8), followed by 6 pm and 7 pm (22%, -3.7 ppb, 95% CI: -4.8, -2.6 and 22%, -4.8, -2.5, respectively), while the smallest decreases occurred at 11 pm and 1 am (both: 11%, -1.9 ppb, 95% CI: -3.1, -0.7)., Conclusion: NY on Pause's impact on TRAP varied greatly diurnally. Decreases during early morning and evening time periods are likely due to decreases in traffic. Our results may be useful for planning traffic policies that vary by time of day, such as congestion tolling policies., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2022 The Authors.)- Published
- 2022
- Full Text
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