8 results on '"Katarzyna Durlik-Popińska"'
Search Results
2. Correlations between autoantibodies and the ATR-FTIR spectra of sera from rheumatoid arthritis patients
- Author
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Katarzyna Durlik-Popińska, Paulina Żarnowiec, Iwona Konieczna-Kwinkowska, Łukasz Lechowicz, Józef Gawęda, and Wiesław Kaca
- Subjects
Medicine ,Science - Abstract
Abstract Rheumatoid arthritis (RA) is one of the most common autoimmune diseases worldwide. Due to high heterogeneity in disease manifestation, accurate and fast diagnosis of RA is difficult. This study analyzed the potential relationship between the infrared (IR) spectra obtained by attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR) and the presence of autoantibodies and antibodies against urease in sera. Additionally, the wave number of the IR spectrum that enabled the best differentiation between patients and healthy blood donors was investigated. Using a mathematical model involving principal component analysis and discriminant analysis, it was shown that the presence of anti-citrullinated protein antibody, rheumatoid factor, anti-neutrophil cytoplasmic antibodies, and anti-nuclear antibodies correlated significantly with the wave numbers in the IR spectra of the tested sera. The most interesting findings derived from determination of the best predictors for distinguishing RA. Characteristic features included an increased reaction with urease mimicking peptides and a correspondence with particular nucleic acid bands. Taken together, the results demonstrated the potential application of ATR-FTIR in the study of RA and identified potential novel markers of the disease.
- Published
- 2021
- Full Text
- View/download PDF
3. Draft Genome of Proteus mirabilis Serogroup O18 Elaborating Phosphocholine-Decorated O Antigen
- Author
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Grzegorz Czerwonka, Dawid Gmiter, and Katarzyna Durlik-Popińska
- Subjects
Proteus mirabilis ,phosphocholine ,lipopolysaccharide ,urinary tract infection ,genome ,Microbiology ,QR1-502 - Abstract
Proteus mirabilis is a pathogenic, Gram-negative, rod-shaped bacterium that causes ascending urinary tract infections. Swarming motility, urease production, biofilm formation, and the properties of its lipopolysaccharide (LPS) are all factors that contribute to the virulence of this bacterium. Uniquely, members of the O18 serogroup elaborate LPS molecules capped with O antigen polymers built of pentasaccharide repeats; these repeats are modified with a phosphocholine (ChoP) moiety attached to the proximal sugar of each O unit. Decoration of the LPS with ChoP is an important surface modification of many pathogenic and commensal bacteria. The presence of ChoP on the bacterial envelope is correlated with pathogenicity, as decoration with ChoP plays a role in bacterial adhesion to mucosal surfaces, resistance to antimicrobial peptides and sensitivity to complement-mediated killing in several species. The genome of P. mirabilis O18 is 3.98 Mb in size, containing 3,762 protein-coding sequences and an overall GC content of 38.7%. Annotation performed using the RAST Annotation Server revealed genes associated with choline phosphorylation, uptake and transfer. Moreover, amino acid sequence alignment of the translated licC gene revealed it to be homologous to LicC from Streptococcus pneumoniae encoding CTP:phosphocholine cytidylyltransferase. Recognized homologs are located in the O antigen gene clusters of Proteus species, near the wzx gene encoding the O antigen flippase, which translocates lipid-linked O units across the inner membrane. This study reveals the genes potentially engaged in LPS decoration with ChoP in P. mirabilis O18.
- Published
- 2021
- Full Text
- View/download PDF
4. Phosphocholine decoration of
- Author
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Grzegorz, Czerwonka, Katarzyna, Durlik-Popińska, Marcin, Drabik, Martyna, Szczerba, Maria, Kwiatkowska, and Wiesław, Kaca
- Published
- 2022
5. Bacterial Motility and Its Role in Skin and Wound Infections
- Author
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Katarzyna Zegadło, Monika Gieroń, Paulina Żarnowiec, Katarzyna Durlik-Popińska, Beata Kręcisz, Wiesław Kaca, and Grzegorz Czerwonka
- Subjects
Inorganic Chemistry ,Organic Chemistry ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
Skin and wound infections are serious medical problems, and the diversity of bacteria makes such infections difficult to treat. Bacteria possess many virulence factors, among which motility plays a key role in skin infections. This feature allows for movement over the skin surface and relocation into the wound. The aim of this paper is to review the type of bacterial movement and to indicate the underlying mechanisms than can serve as a target for developing or modifying antibacterial therapies applied in wound infection treatment. Five types of bacterial movement are distinguished: appendage-dependent (swimming, swarming, and twitching) and appendage-independent (gliding and sliding). All of them allow bacteria to relocate and aid bacteria during infection. Swimming motility allows bacteria to spread from ‘persister cells’ in biofilm microcolonies and colonise other tissues. Twitching motility enables bacteria to press through the tissues during infection, whereas sliding motility allows cocci (defined as non-motile) to migrate over surfaces. Bacteria during swarming display greater resistance to antimicrobials. Molecular motors generating the focal adhesion complexes in the bacterial cell leaflet generate a ‘wave’, which pushes bacterial cells lacking appendages, thereby enabling movement. Here, we present the five main types of bacterial motility, their molecular mechanisms, and examples of bacteria that utilise them. Bacterial migration mechanisms can be considered not only as a virulence factor but also as a target for antibacterial therapy.
- Published
- 2023
- Full Text
- View/download PDF
6. Correlations between autoantibodies and the ATR-FTIR spectra of sera from rheumatoid arthritis patients
- Author
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Józef Gawęda, Wiesław Kaca, Katarzyna Durlik-Popińska, Iwona Konieczna-Kwinkowska, Paulina Żarnowiec, and Łukasz Lechowicz
- Subjects
Adult ,Male ,Science ,Infrared spectroscopy ,Ataxia Telangiectasia Mutated Proteins ,Predictive markers ,Peptides, Cyclic ,Article ,Arthritis, Rheumatoid ,Ftir spectra ,Rheumatoid Factor ,Spectroscopy, Fourier Transform Infrared ,medicine ,Humans ,Rheumatoid factor ,Aged ,Autoantibodies ,Multidisciplinary ,biology ,Chemistry ,Autoantibody ,Diagnostic markers ,Middle Aged ,medicine.disease ,Molecular biology ,Rheumatoid arthritis ,Attenuated total reflection ,biology.protein ,Nucleic acid ,Medicine ,Female ,Antibody ,Peptides - Abstract
Rheumatoid arthritis (RA) is one of the most common autoimmune diseases worldwide. Due to high heterogeneity in disease manifestation, accurate and fast diagnosis of RA is difficult. This study analyzed the potential relationship between the infrared (IR) spectra obtained by attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR) and the presence of autoantibodies and antibodies against urease in sera. Additionally, the wave number of the IR spectrum that enabled the best differentiation between patients and healthy blood donors was investigated. Using a mathematical model involving principal component analysis and discriminant analysis, it was shown that the presence of anti-citrullinated protein antibody, rheumatoid factor, anti-neutrophil cytoplasmic antibodies, and anti-nuclear antibodies correlated significantly with the wave numbers in the IR spectra of the tested sera. The most interesting findings derived from determination of the best predictors for distinguishing RA. Characteristic features included an increased reaction with urease mimicking peptides and a correspondence with particular nucleic acid bands. Taken together, the results demonstrated the potential application of ATR-FTIR in the study of RA and identified potential novel markers of the disease.
- Published
- 2021
- Full Text
- View/download PDF
7. Antibodies Isolated from Rheumatoid Arthritis Patients against Lysine-Containing Proteus mirabilis O3 (S1959) Lipopolysaccharide May React with Collagen Type I
- Author
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Katarzyna Durlik-Popińska, Łukasz Lechowicz, Paulina Żarnowiec, Józef Gawęda, and Wiesław Kaca
- Subjects
0301 basic medicine ,rheumatoid arthritis ,Lipopolysaccharide ,Synthetic antigen ,Dot blot ,Catalysis ,Epitope ,rheumatoid factor ,lcsh:Chemistry ,Inorganic Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Rheumatoid factor ,Physical and Theoretical Chemistry ,lcsh:QH301-705.5 ,Molecular Biology ,anti-citrullinated protein antibodies ,Spectroscopy ,030102 biochemistry & molecular biology ,biology ,Chemistry ,Organic Chemistry ,lipopolysaccharide ,Anti–citrullinated protein antibody ,General Medicine ,biology.organism_classification ,Molecular biology ,Proteus mirabilis ,Computer Science Applications ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,biology.protein ,rheumatic diseases ,Antibody - Abstract
Most rheumatic diseases, including rheumatoid arthritis (RA), are characterized by immune disorders that affect antibody activity. In the present study, using Dot blot and ELISA assay, we showed that patients with rheumatic disease produced significantly more antibodies against lipopolysaccharide (LPS) P. mirabilis O3 compared to healthy donors (p <, 0.05), and affinity purified antibodies against LPS O3 may cross-react with collagen type I. It was demonstrated that purified of antibodies isolated from RA patients sera, reacted stronger with the collagen than healthy donors (p = 0.015), and cross-reaction was correlated with level of anti-citrullinated peptide antibodies (r = 0.7, p = 0.003). Moreover, using six different lipopolysaccharides were demonstrated the significant correlations in sera reactivity among lysine-containing lipopolysaccharides observed in patients&rsquo, sera (p <, 0.05). Using Attenuated Total Reflection Fourier Transform Infrared Spectroscopy (ATR-FTIR) it was shown that unique wavenumbers of sera spectra correlate with reactivity with lipopolysaccharides allowing distinguish patients from healthy blood donors. Antibodies adsorption by synthetic antigens shows that in patients&rsquo, group anti-LPS O3 antibodies can be adsorbed by both amides of galacturonic acid and lysine or threonine, which suggests less specificity of antibodies binding with non-carbohydrate LPS component. The observed correlations suggest that non-carbohydrate components of LPS may be an important epitope for less specific anti-LPS antibodies, which might lead to cross-reactions and affect disease development.
- Published
- 2020
- Full Text
- View/download PDF
8. Draft Genome of
- Author
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Grzegorz, Czerwonka, Dawid, Gmiter, and Katarzyna, Durlik-Popińska
- Subjects
Cellular and Infection Microbiology ,phosphocholine ,Phosphorylcholine ,lipopolysaccharide ,O Antigens ,Serogroup ,urinary tract infection ,Proteus mirabilis ,genome ,Bacterial Adhesion ,Original Research - Abstract
Proteus mirabilis is a pathogenic, Gram-negative, rod-shaped bacterium that causes ascending urinary tract infections. Swarming motility, urease production, biofilm formation, and the properties of its lipopolysaccharide (LPS) are all factors that contribute to the virulence of this bacterium. Uniquely, members of the O18 serogroup elaborate LPS molecules capped with O antigen polymers built of pentasaccharide repeats; these repeats are modified with a phosphocholine (ChoP) moiety attached to the proximal sugar of each O unit. Decoration of the LPS with ChoP is an important surface modification of many pathogenic and commensal bacteria. The presence of ChoP on the bacterial envelope is correlated with pathogenicity, as decoration with ChoP plays a role in bacterial adhesion to mucosal surfaces, resistance to antimicrobial peptides and sensitivity to complement-mediated killing in several species. The genome of P. mirabilis O18 is 3.98 Mb in size, containing 3,762 protein-coding sequences and an overall GC content of 38.7%. Annotation performed using the RAST Annotation Server revealed genes associated with choline phosphorylation, uptake and transfer. Moreover, amino acid sequence alignment of the translated licC gene revealed it to be homologous to LicC from Streptococcus pneumoniae encoding CTP:phosphocholine cytidylyltransferase. Recognized homologs are located in the O antigen gene clusters of Proteus species, near the wzx gene encoding the O antigen flippase, which translocates lipid-linked O units across the inner membrane. This study reveals the genes potentially engaged in LPS decoration with ChoP in P. mirabilis O18.
- Published
- 2020
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