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8. CyanoBase: a large-scale update on its 20th anniversary

Author

Fujisawa, Takatomo, primary, Narikawa, Rei, additional, Maeda, Shin-ichi, additional, Watanabe, Satoru, additional, Kanesaki, Yu, additional, Kobayashi, Koichi, additional, Nomata, Jiro, additional, Hanaoka, Mitsumasa, additional, Watanabe, Mai, additional, Ehira, Shigeki, additional, Suzuki, Eiji, additional, Awai, Koichiro, additional, and Nakamura, Yasukazu, additional

Published
2016
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12. CyanoBase: a large-scale update on its 20th anniversary.

Author

Fujisawa T, Narikawa R, Maeda SI, Watanabe S, Kanesaki Y, Kobayashi K, Nomata J, Hanaoka M, Watanabe M, Ehira S, Suzuki E, Awai K, and Nakamura Y

Subjects
Computational Biology methods, Web Browser, Cyanobacteria genetics, Databases, Genetic, Genome, Bacterial, Genomics methods
Abstract

The first ever cyanobacterial genome sequence was determined two decades ago and CyanoBase (http://genome.microbedb.jp/cyanobase), the first database for cyanobacteria was simultaneously developed to allow this genomic information to be used more efficiently. Since then, CyanoBase has constantly been extended and has received several updates. Here, we describe a new large-scale update of the database, which coincides with its 20th anniversary. We have expanded the number of cyanobacterial genomic sequences from 39 to 376 species, which consists of 86 complete and 290 draft genomes. We have also optimized the user interface for large genomic data to include the use of semantic web technologies and JBrowse and have extended community-based reannotation resources through the re-annotation of Synechocystis sp. PCC 6803 by the cyanobacterial research community. These updates have markedly improved CyanoBase, providing cyanobacterial genome annotations as references for cyanobacterial research., (© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.)

Published
2017
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