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Context: Invasive species cause widespread species extinction and economic loss. There is an increasing need to identify ways to efficiently target control efforts from local to regional scales. Objectives: Our goal was to test whether prioritizing managed habitat using different treatments based on spatial measures of connectivity, including graph-theoretic measures, can improve management of invasive species and whether the level of control effort affects treatment performance. We also explored how uncertainty in biological variables, such as dispersal ability, affects measures performance. Methods: We used a spatially-explicit, individual-based model (sIBM) based on the American bullfrog (Lithobates catesbeianus), a globally pervasive invasive species. Simulations were informed by geographic data from part of the American bullfrog’s non-native range in southeastern Arizona, USA where they are known to pose a threat to native species. Results: We found that total bullfrog populations and occupancy declined in response to all treatments regardless of effort level or patch prioritization methods. The most effective spatial prioritization was effort-dependent and varied depending on spatial context, but frequently a buffer strategy was most effective. Treatments were also sensitive to dispersal ability. Performance of treatments prioritizing habitat patches using betweenness centrality improved with increasing dispersal ability, while performance of eigenvalue centrality improved as dispersal ability decreased. Conclusions: With the careful application of connectivity measures to prioritize control efforts, similar reductions in invasive species population size and occupancy could be achieved with less than half the effort of sub-optimal connectivity measures at higher effort rates. More work is needed to determine if trait-based generalities may define appropriate connectivity measures for specific suites of dispersal abilities, demographic traits, and population dynamics. [ABSTRACT FROM AUTHOR]

ABSTRACTGcn4p belongs to conserved AP-1 transcription factors involved in many cellular processes, including cell proliferation, stress response, and nutrient availability in yeast and mammals. AP-1 activities are regulated at different levels, such as translational activation or protein degradation, which increases the variability of regulation under different conditions. Gcn4p activity in unstructured yeast liquid cultures increases upon amino acid deficiency and is rapidly eliminated upon amino acid excess. Gcn2p kinase is the major described regulator of Gcn4p that enables GCN4 mRNA translation via the uORFs mechanism. Here, we show that Gcn4p is specifically active in U cells in the upper regions and inactive in L cells in the lower regions of differentiated colonies. Using in situ microscopy in combination with analysis of mutants and strains with GFP at different positions in the translational regulatory region of Gcn4p, we show that cell-specific Gcn4p activity is independent of Gcn2p or other translational or transcriptional regulation. Genetically, biochemically, and microscopically, we identified cell-specific proteasomal degradation as a key mechanism that diversifies Gcn4p function between U and L cells. The identified regulation leading to active Gcn4p in U cells with amino acids and efficient degradation in starved L cells differs from known regulations of Gcn4p in yeast but shows similarities to the activity of AP-1 ATF4 in mammals during insulin signaling. These findings may open new avenues for understanding the parallel activities of Gcn4p/ATF4 and reveal a novel biological role for cell type-specific regulation of proteasome-dependent degradation.IMPORTANCEIn nature, microbes usually live in spatially structured communities and differentiate into precisely localized, functionally specialized cells. The coordinated interplay of cells and their response to environmental changes, such as starvation, followed by metabolic adaptation, is critical for the survival of the entire community. Transcription factor Gcn4p is responsible for yeast adaptation under amino acid starvation in liquid cultures, and its activity is regulated mainly at the level of translation involving Gcn2p kinase. Whether Gcn4p functions in structured communities was unknown. We show that translational regulation of Gcn4p plays no role in the development of colony subpopulations; the main regulation occurs at the level of stabilization of the Gcn4p molecule in the cells of one subpopulation and its proteasomal degradation in the other. This regulation ensures specific spatiotemporal activity of Gcn4p in the colony. Our work highlights differences in regulatory networks in unorganized populations and organized structures of yeast, which in many respects resemble multicellular organisms.

Demographic rates such as recruitment and survival probability can vary considerably among populations of the same species due to variation in underlying environmental processes. If environmental processes are spatially correlated, nearby populations are expected to have more similar demographic rates than those further apart. Breeding populations and foraging ranges are spatially segregated in colonial seabirds, making them ideal for studying spatial patterns in demographic rates and their effects on local population dynamics. Here we explored variation in age‐dependent survival probabilities across 14 colonies of Herring Gulls Larus argentatus breeding along the Dutch North Sea coast. We used long‐term mark–recapture data of marked fledglings to estimate survival, and estimated spatial autocorrelation of survival probabilities. We assessed whether survival until recruitment age or until 10 years old (close to their expected lifespan) explained variation in population trajectories of each colony. Juvenile and adult survival showed a strong, but different, north‐to‐south gradient in survival probability, with lower juvenile but higher adult survival in northern colonies than southern colonies, whereas the spatial pattern of immature survival was less distinct. Neither recruitment nor the proportion of 10‐year‐old adults alive predicted whether a colony collapsed, declined, remained stable or increased. The distinct spatial pattern in survival suggests variation in regional food availability, which do not seem to drive local population dynamics. The absence of a link between survival and colony trajectories implies that connectivity between populations plays an important role affecting population dynamics. [ABSTRACT FROM AUTHOR]

In this paper, we solve the Cauchy problem for a hyperbolic system of first-order PDEs defined on a certain Banach space X. The system has a special semilinear structure because, on the one hand, the evolution law can be expressed as the sum of a linear unbounded operator and a nonlinear Lipschitz function but, on the other hand, the nonlinear perturbation takes values not in X but on a larger space Y which is related to X. In order to deal with this situation we use the theory of dual semigroups. Stability results around steady states are also given when the nonlinear perturbation is Fréchet differentiable. These results are based on two propositions: one relating the local dynamics of the nonlinear semiflow with the linearised semigroup around the equilibrium, and a second relating the dynamical properties of the linearised semigroup with the spectral values of its generator. The later is proven by showing that the Spectral Mapping Theorem always applies to the semigroups one obtains when the semiflow is linearised. Some epidemiological applications involving gut bacteria are commented [ABSTRACT FROM AUTHOR]

The gut microbiota features important genetic diversity, and the specific spatial features of the gut may shape evolution within this environment. We investigate the fixation probability of neutral bacterial mutants within a minimal model of the gut that includes hydrodynamic flow and resulting gradients of food and bacterial concentrations. We find that this fixation probability is substantially increased, compared with an equivalent well-mixed system, in the regime where the profiles of food and bacterial concentration are strongly spatially dependent. Fixation probability then becomes independent of total population size. We show that our results can be rationalized by introducing an active population, which consists of those bacteria that are actively consuming food and dividing. The active population size yields an effective population size for neutral mutant fixation probability in the gut. [ABSTRACT FROM AUTHOR]

Ecological theory and recent empirical studies show that the persistence of spatially structured populations – those composed of spatially separated local populations connected by dispersal – may require the maintenance of pools of floaters (nonbreeding but sexually mature individuals) that rescue small local populations from extinction by replacing the lost breeders. Regardless of the rescue of local breeding populations, the persistence of spatially structured populations may also depend on sufficient numbers of colonizations that counteract local extinctions. Given their intrinsic potential mobility, floaters have been proposed to promote the persistence of spatially structured populations by enhancing the (re)colonization of empty habitat patches in fragmented habitats. However, robust empirical assessments of this hypothesis are lacking. Using a long‐term woodpecker study in fragmented habitats as a model framework, we addressed the largely neglected hypothesis that floaters enhance the colonization of local patches and, consequently, facilitate the persistence of spatially structured populations. The size of the entire spatially structured system (number of local populations) increased across years due to a slightly higher number of colonizations than extinctions, suggesting that an increase in colonization may enhance the long‐term persistence of this spatially structured population. After controlling for the number of patches occupied in previous years, the number of colonizations was positively related to the number of patches with floaters in previous seasons. Moreover, after controlling for potential confounding factors, patches with floaters were considerably more likely to be colonized in subsequent seasons than patches without floaters (0.079 vs. 0.008). Colonizations were often conducted through inter‐patch dispersal by floaters that established their territory in empty patches after a variable wandering period, which frequently led to delayed breeding beyond the age of sexual maturity. Altogether, these results provide empirical support for the hypothesis of an enhanced colonization mediated by floaters as a buffer mechanism for the long‐term persistence of spatially structured populations. [ABSTRACT FROM AUTHOR]

Movement, both within an individual's home range and at the scale of dispersal, is a fundamental aspect of an animal's life. The field of movement ecology has established a conceptual framework to analyze the lifetime movement of an organism, offering a sound basis for conservation actions since the movement range of many species has been altered by habitat fragmentation and degradation. An organism's lifetime movement is organized around three main functions—exploitation, exploration, and relocation—which are associated with specific behavioral mechanisms and spatio-temporal scales. The movement ecology framework is a valuable tool as applied to amphibians, as managing these spatially structured populations requires in-depth knowledge of the behavioral mechanisms that determine movement. In terms of exploitation, these animals have a complex lifecycle, which involves migrating between different types of habitat, thus requiring them to cross a landscape matrix that may be more or less inhospitable. In terms of exploration and relocation, between-pond movements within the pond archipelagoes of a given population are frequent and strongly contribute to population resilience. Relocation also occurs at a larger scale, through long-distance dispersal to colonize new patches, exposing the individuals to unknown environments. Each function, at each scale, involves specific interactions between individual motivation (phenotype dependence) and environmental quality (context dependence) that determine decision-making and fitness outputs. Long-term exposure to local selective pressures can lead to differentiation in coping types that could be considered as Evolutionarily Significant Units (ESUs) for conservation. At the scale of a patch, the optimal direction of migration can be inherited, thus allowing the optimization of migration routes for juveniles. At the regional scale, a dispersal syndrome resulting in a greater propensity for boldness and exploration could be a response to unpredictable breeding sites or the high benefits of colonizing a rich habitat. Greater knowledge about such behavioral adaptations to specific situations would allow more targeted development of conservation measures or help to stop the spread of invasive species. The evolutionary context of movement behavior is thus of primary interest in designing effective conservation actions in a changing world.

Bacteria often live in spatially structured groups such as biofilms. In these groups, cells can collectively generate gradients through the uptake and release of compounds. In turn, individual cells adapt their activities to the environment shaped by the whole group. Here, we studied how these processes can generate phenotypic variation in clonal populations and how this variation contributes to the resilience of the population to antibiotics. We grew two-dimensional populations of Escherichia coli in microfluidic chambers where limiting amounts of glucose were supplied from one side. We found that the collective metabolic activity of cells created microscale gradients where nutrient concentration varied over a few cell lengths. As a result, growth rates and gene expression levels varied strongly between neighbouring cells. Furthermore, we found evidence for a metabolic cross-feeding interaction between glucose-fermenting and acetate-respiring subpopulations. Finally, we found that subpopulations of cells were able to survive an antibiotic pulse that was lethal in well-mixed conditions, likely due to the presence of a slow-growing subpopulation. Our work shows that emergent metabolic gradients can have important consequences for the functionality of bacterial populations as they create opportunities for metabolic interactions and increase the populations' tolerance to environmental stressors. This article is part of a discussion meeting issue 'Single cell ecology'. [ABSTRACT FROM AUTHOR]

Evolutionary ecology studies have increasingly focused on the impact of intraspecific variability on population processes. However, the role such variation plays in the dynamics of spatially structured populations and how it interacts with environmental changes remains unclear. Here we experimentally quantify the relative importance of intraspecific variability in dispersal-related traits and spatiotemporal variability of environmental conditions for the dynamics of two-patch metapopulations using clonal genotypes of a ciliate in connected microcosms. We demonstrate that in our simple two-patch microcosms, differences among genotypes are at least as important as spatiotemporal variability of resources for metapopulation dynamics. Furthermore, we show that an important proportion of this effect results from variability of dispersal syndromes. These syndromes can therefore be as important for metapopulation dynamics as spatiotemporal variability of environmental conditions. This study demonstrates that intraspecific variability in dispersal syndromes can be key in the functioning of metapopulations facing environmental changes. [ABSTRACT FROM AUTHOR]

Understanding the mechanisms that regulate the dynamics of spatially structured populations (SSP) is a critical challenge for ecologists and conservation managers. Internal population processes such as births and deaths occur at a local level, while external processes such as dispersal take place at an inter‐population level. At both levels, density dependence is expected to play a critical role. At a patch scale, demographic traits (e.g., survival, breeding success) and the population growth rate can be influenced by density either negatively (e.g., competition effect) or positively (e.g., Allee effects). At the scale of an SSP, although positive density‐dependent dispersal has been widely reported, an increasing number of studies have highlighted negative density‐dependent dispersal.While many studies have investigated the effects of density on population growth or on dispersal, few have simultaneously examined density‐dependent effects at the scale of both the local population and the entire SSP. In this study, we examine how density is related to demographic processes at both the pond level (survival and population growth) and the SSP level (between‐pond dispersal) in a pond‐breeding amphibian, the great crested newt (Triturus cristatus). The study was based on 20 years of individual capture–recapture (CR) data (from 1996 to 2015) gathered from an SSP made up of 12 experimental ponds ("patches").We first used a CR multievent model to estimate both survival and dispersal rates in specific ponds as a function of distance between ponds. Then, using a second CR multievent model, we examined whether survival and recapture rates were influenced by population density in a pond. Lastly, we used state‐space time series models to investigate whether density affected population growth in each pond.Our results found a positive density‐dependent effect on survival and a negative density‐dependent effect on departure. In addition, the findings indicate that population growth was negatively related to density in all 12 ponds.These results support the hypothesis that in SSPs, density may have multiple and contrasting effects on demographic parameters and growth rates within local populations as well as on dispersal. This study underlines the need to better understand how density dependence may influence potential trade‐offs between life‐history strategies and life‐history stages. This paper is the first measure of density effects in a large spatially structured population of an amphibian. The relationship between density and both survival and emigration leads to local crowding effects. However, a negative relationship with local population growth rate suggests regulatory processes probably due to competition among larvae. [ABSTRACT FROM AUTHOR]

‘Hilltopping’ is a common mate-locating behaviour exhibited by numerous insect taxa; individuals aggregate on summits, ridges and other topographic features, and thereby increase their likelihood of mating. Recently, hilltopping has gained interest as a model system to study nonrandom dispersal. We tested four predictions from the hilltopping literature regarding individual movement behaviour and the resulting spatial distribution of summit aggregations. Through observations and capture–mark–recapture studies using the day-flying tiger moth, Arctia (formerly Platyprepia ) virginalis , we found evidence for all predictions. The highest densities of moths were associated with a few, high-elevation summits and were recaptured over multiple days. No individuals were found to move between summit aggregations and mated females had shorter residency times than males. We discuss our results in the context of the predictions, the behaviour of other hilltopping species, implications for population structure and spatial population dynamics. [ABSTRACT FROM AUTHOR]

Mobile species with complex spatial dynamics can be difficult to manage because their population distributions vary across space and time, and because the consequences of managing particular habitats are uncertain when evaluated at the level of the entire population. Metrics to assess the importance of habitats and pathways connecting habitats in a network are necessary to guide a variety of management decisions. Given the many metrics developed for spatially structured models, it can be challenging to select the most appropriate one for a particular decision. To guide the management of spatially structured populations, we define three classes of metrics describing habitat and pathway quality based on their data requirements (graph-based, occupancy-based, and demographic-based metrics) and synopsize the ecological literature relating to these classes. Applying the first steps of a formal decision-making approach (problem framing, objectives, and management actions), we assess the utility of metrics for particular types of management decisions. Our framework can help managers with problem framing, choosing metrics of habitat and pathway quality, and to elucidate the data needs for a particular metric. Our goal is to help managers to narrow the range of suitable metrics for a management project, and aid in decision-making to make the best use of limited resources. [ABSTRACT FROM AUTHOR]

Setting operational targets for the protection of species is crucial for identifying conservation priorities and for monitoring conservation actions' effectiveness. The use of quantitative targets for global species conservation has grown in the past ten years as a response to the commitment of reducing extinction rates established by the Convention on Biological Diversity. We reviewed the use of conservation targets in global scale conservation analyses, and found that most of the publications adopted species representation targets, corresponding to an amount of area to be protected. We found no work adequately targeting species' persistence, i.e. the complement to species extinction risk. Despite the adoption of pragmatic population targets, consisting in a number of individuals to be protected, has been recently proposed for global species conservation, the use of these targets at the species level is not always warranted. Pros and cons of using population persistence targets for species conservation have been discussed, yet the fundamental issue of how to scale these targets from populations to species is still unresolved. We discuss the process of "scaling up" population persistence targets to the species level using habitat distribution models, and test our approach in a case study on the European ground squirrel (Spermophilus citellus). We identified three main steps to be followed: (i) definition of a population target, (ii) characterisation of the species' populations by means of a habitat suitability model, and (iii) definition of a scaled species target. An up-scaled species target should include multiple conditions reflecting species persistence (number, size, location of the populations to be protected), uniqueness (e.g. evolutionary potential) and representativeness (e.g. presence in different ecosystems). Adopting scaled up species persistence targets within conservation planning approaches can allow protected area plans to give the highest contribution to reducing global species extinction risk. [ABSTRACT FROM AUTHOR]

We employ partial integro-differential equations to model trophic interaction in a spatially extended heterogeneous environment. Compared to classical reaction-diffusion models, this framework allows us to more realistically describe the situation where movement of individuals occurs on a faster time scale than on the demographic (population) time scale, and we cannot determine population growth based on local density. However, most of the results reported so far for such systems have only been verified numerically and for a particular choice of model functions, which obviously casts doubts about these findings. In this paper, we analyse a class of integro-differential predator-prey models with a highly mobile predator in a heterogeneous environment, and we reveal the main factors stabilizing such systems. In particular, we explore an ecologically relevant case of interactions in a highly eutrophic environment, where the prey carrying capacity can be formally set to 'infinity'. We investigate two main scenarios: (1) the spatial gradient of the growth rate is due to abiotic factors only, and (2) the local growth rate depends on the global density distribution across the environment (e.g. due to non-local self-shading). For an arbitrary spatial gradient of the prey growth rate, we analytically investigate the possibility of the predator-prey equilibrium in such systems and we explore the conditions of stability of this equilibrium. In particular, we demonstrate that for a Holling type I (linear) functional response, the predator can stabilize the system at low prey density even for an 'unlimited' carrying capacity. We conclude that the interplay between spatial heterogeneity in the prey growth and fast displacement of the predator across the habitat works as an efficient stabilizing mechanism. These results highlight the generality of the stabilization mechanisms we find in spatially structured predator-prey ecological systems in a heterogeneous environment. [ABSTRACT FROM AUTHOR]

Microbes live in ever-changing environments where they need to adapt their metabolism to different nutrient conditions. Many studies have characterized the response of genetically identical cells to nutrient switches in homogeneous cultures; however, in nature, microbes often live in spatially structured groups such as biofilms where cells can create metabolic gradients by consuming and releasing nutrients. Consequently, cells experience different local microenvironments and vary in their phenotype. How does this phenotypic variation affect the ability of cells to cope with nutrient switches? Here, we address this question by growing dense populations of Escherichia coli in microfluidic chambers and studying a switch from glucose to acetate at the single-cell level. Before the switch, cells vary in their metabolic activity: some grow on glucose, while others cross-feed on acetate. After the switch, only few cells can resume growth after a period of lag. The probability to resume growth depends on a cells' phenotype prior to the switch: it is highest for cells cross-feeding on acetate, while it depends in a non-monotonic way on the growth rate for cells growing on glucose. Our results suggest that the strong phenotypic variation in spatially structured populations might enhance their ability to cope with fluctuating environments.