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Among the extensive repertoire of carbohydrate-active enzymes, lytic polysaccharide monooxygenases (LPMOs) have a key role in recalcitrant biomass degradation. LPMOs are copper-dependent enzymes that catalyze oxidative cleavage of glycosidic bonds in polysaccharides such as cellulose and chitin. Several LPMOs contain carbohydrate-binding modules (CBMs) that are known to promote LPMO efficiency. However, structural and functional properties of some CBMs remain unknown, and it is not clear why some LPMOs, like CjLPMO10A from the soil bacterium Cellvibrio japonicus, have multiple CBMs (CjCBM5 and CjCBM73). Here, we studied substrate binding by these two CBMs to shine light on their functional variation and determined the solution structures of both by NMR, which constitutes the first structure of a member of the CBM73 family. Chitin-binding experiments and molecular dynamics simulations showed that, while both CBMs bind crystalline chitin with Kd values in the micromolar range, CjCBM73 has higher affinity for chitin than CjCBM5. Furthermore, NMR titration experiments showed that CjCBM5 binds soluble chitohexaose, whereas no binding of CjCBM73 to this chitooligosaccharide was detected. These functional differences correlate with distinctly different arrangements of three conserved aromatic amino acids involved in substrate binding. In CjCBM5, these residues show a linear arrangement that seems compatible with the experimentally observed affinity for single chitin chains. On the other hand, the arrangement of these residues in CjCBM73 suggests a wider binding surface that may interact with several chitin chains. Taken together, these results provide insight into natural variation among related chitin-binding CBMs and the possible functional implications of such variation. [ABSTRACT FROM AUTHOR]

A considerable number of lytic polysaccharide monooxygenases (LPMOs) and other carbohydrate-active enzymes are modular, with catalytic domains being tethered to additional domains, such as carbohydrate-binding modules, by flexible linkers. While such linkers may affect the structure, function, and stability of the enzyme, their roles remain largely enigmatic, as do the reasons for natural variation in length and sequence. Here, we have explored linker functionality using the two-domain cellulose-active ScLPMO10C from Streptomyces coelicolor as a model system. In addition to investigating the WT enzyme, we engineered three linker variants to address the impact of both length and sequence and characterized these using small-angle X-ray scattering, NMR, molecular dynamics simulations, and functional assays. The resulting data revealed that, in the case of ScLPMO10C, linker length is the main determinant of linker conformation and enzyme performance. Both the WT and a serine-rich variant, which have the same linker length, demonstrated better performance compared with those with either a shorter linker or a longer linker. A highlight of our findings was the substantial thermostability observed in the serine-rich variant. Importantly, the linker affects thermal unfolding behavior and enzyme stability. In particular, unfolding studies show that the two domains unfold independently when mixed, whereas the full-length enzyme shows one cooperative unfolding transition, meaning that the impact of linkers in biomass-processing enzymes is more complex than mere structural tethering [ABSTRACT FROM AUTHOR]

The CO 2 formation mechanism on Fe x C y and its structure–reactivity relationship during sintering process were systemically elucidated using the ReaxFF. [Display omitted] • Investigate the structure-activity relationship of different Fe-based nanoparticles in the sintering process. • Formation of low-coordination-number atoms may be the real reason for promoted TOF of the sintering structures. • The increased amplitude of surface area of sintered Fe x C y varies with its content of carbon. • The main CO 2 formation varies with the Fe x C y : Eley-Rideal VS. Langmuir-Hinshelwood mechanism. The sintering of nanostructured catalysts poses a grand challenge in understanding the complex mechanism in the experimental phenomena, as well as the structure-activity relationship. Here, we systematically investigate the structure-activity relationship of sintered Fe-based catalysts, including Fe 2 C, Fe 5 C 2 , Fe 3 C and pure Fe, in the CO activation by reactive molecular dynamics simulations. The results show that the sintering structures can promote the turn-over frequency of Fe 3 C compared with its un-sintered near-size structures, which might be attributed to the formation of low-coordination-number atoms. The change of surface area shows a similar trend for Fe x C y and pure Fe, and its increased magnitude varies with the content of carbon in the Fe x C y bulk. For size effect, the Fe 2 C displays the largest turn-over frequency for the 4.34 nm particle. The CO 2 formation mechanism has also been compared for different Fe x C y , which may provide critical theoretical insights for industrial reduction of CO 2 emission. [ABSTRACT FROM AUTHOR]