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This paper examines the changes of El Niño–Southern Oscillation (ENSO) associated winter rainfall relationship in Southeast Asia (SEA) in the historical period (1981–2010) and future period (2071–2100) based on the Coupled Model Intercomparison Project Phase 6 (CMIP6) models simulations. Twenty general circulation models (GCMs) are chosen from the Scenario Model Intercomparison Project (ScenarioMIP) highest emission scenario—Shared Socioeconomic Pathway (SSP) 5‐8.5. This study focuses only on the GCMs that have been able to replicate the consistent associated patterns observed, referred to as "teleconnection‐consistent models" (TCMs). During historical period, ENSO has significant negative association with SEA winter rainfall, particularly over Indochina mainland, Maritime Continent (MC) and northern Borneo. The significant negative‐associated teleconnection affected area has increased under future climate, particularly over southern part of South China Sea (SCS). The weakening of south westerlies at Western North Pacific (WNP) centred near 20°N reduces the moisture transport from Indochina into south of China, increase the negative correlated affected area in the SEA regions above equator. The northeasterlies/easterlies that prevailed from the WNP anticyclone (AC) brings significant moisture flux into southern Borneo, causing increment of significant positive‐associated moisture flux convergence to that region. The weakening of upward motion in TCM results in less warm and moist air rising over SEA MC, reducing the rainfall availability. The 1° eastward expansion of WC downward branch eastern edge leads to suppression of convective activities, increasing the dry affected area. The results suggest that the ENSO has a larger influence on the negative‐associated SEA rainfall and atmospheric circulation in the December–January–February (DJF) late‐21st century when compared to the 1980–2010. [ABSTRACT FROM AUTHOR]