745 results
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2. Viral hepatitis-induced acute liver failure.
- Author
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Biswas S, Kumar R, Shalimar, and Acharya SK
- Subjects
- Humans, Diagnosis, Differential, Plasma Exchange, Liver Failure, Acute etiology, Liver Failure, Acute therapy, Hepatitis, Viral, Human, Liver Transplantation, Antiviral Agents therapeutic use
- Abstract
Viral hepatitis-induced acute liver failure (ALF) is a preventable cause for liver-related mortality worldwide. Viruses are the most common cause for ALF in developing nations in contrast to the west, where acetaminophen is largely responsible. Viruses may be hepatotropic or affect the liver secondary to a systemic infection. In tropical countries, infections such as leptospirosis, scrub typhus and malaria can mimic the symptoms of ALF. Differentiating these ALF mimics is crucial because they require etiology-specific therapy. Treatment of viral hepatitis-induced ALF is two-pronged and directed towards providing supportive care to prevent organ failures and antiviral drugs for some viruses. Liver transplantation (LT) is an effective modality for patients deteriorating despite adequate supportive care. Early referral and correct identification of patients who require a transplant are important. Liver support devices and plasma exchange have evolved into "bridging modalities" for LT. Preventive strategies such as hand hygiene, use of clean and potable water and inclusion of vaccines against viral hepatitis in the national program are simple yet very effective methods focusing on the preventive aspect of this disease., (© 2024. Indian Society of Gastroenterology.)
- Published
- 2024
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3. Two years into COVID-19 - Lessons in SARS-CoV-2 and a perspective from papers in FEBS Letters
- Author
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Urs F. Greber
- Subjects
medicine.medical_specialty ,History ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Biophysics ,Disease ,medicine.disease_cause ,Virus Replication ,Biochemistry ,Antiviral Agents ,Patient care ,03 medical and health sciences ,0302 clinical medicine ,Structural Biology ,Pandemic ,Genetics ,medicine ,Animals ,Humans ,China ,Molecular Biology ,030304 developmental biology ,Coronavirus ,0303 health sciences ,SARS-CoV-2 ,Outbreak ,COVID-19 ,Cell Biology ,3. Good health ,COVID-19 Drug Treatment ,Family medicine ,Commentary ,030217 neurology & neurosurgery - Abstract
The 2019 outbreak of coronavirus disease (COVID-19) in Wuhan (Hubei province of China) has given rise to a pandemic spread of virus, more than 240 million incidences and a death toll larger than 5 million people. COVID-19 has set off large efforts in research, therapy and patient care, as well as public and private debates in every imaginable form. A number of scientists used the publication platforms provided by the Federation of the European Biochemical Societies (FEBS) to present their research data, reviews, opinions and other contributions relating to COVID-19 and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Here, I highlight the recent COVID-19 papers which have been published and collected in a Virtual Issue in FEBS Letters, and discuss their implications towards understanding the molecular, biochemical and cellular mechanisms of SARS-CoV-2 infections, vaccine development and antiviral discovery strategies.
- Published
- 2021
4. Pharmacological treatment of COVID-19: an opinion paper
- Author
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Alberto García-Lledó, Javier Gómez-Pavón, Juan González del Castillo, Teresa Hernández-Sampelayo, Mari Cruz Martín-Delgado, Francisco Javier Martín Sánchez, Manuel Martínez-Sellés, José María Molero García, Santiago Moreno Guillén, Fernando Rodríguez-Artalejo, Julián Ruiz-Galiana, Rafael Cantón, Pilar De Lucas Ramos, Alejandra García-Botella, and Emilio Bouza
- Subjects
Microbiology (medical) ,Pharmacology ,SARS-CoV-2 ,Humans ,General Medicine ,Antiviral Agents ,Pandemics ,COVID-19 Drug Treatment - Abstract
The precocity and efficacy of the vaccines developed so far against COVID-19 has been the most significant and saving advance against the pandemic. The development of vaccines has not prevented, during the whole period of the pandemic, the constant search for therapeutic medicines, both among existing drugs with different indications and in the development of new drugs. The Scientific Committee of the COVID-19 of the Illustrious College of Physicians of Madrid wanted to offer an early, simplified and critical approach to these new drugs, to new developments in immunotherapy and to what has been learned from the immune response modulators already known and which have proven effective against the virus, in order to help understand the current situation. pre-print 258 KB
- Published
- 2021
5. Blocking NS3-NS4B interaction inhibits dengue virus in non-human primates.
- Author
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Goethals O, Kaptein SJF, Kesteleyn B, Bonfanti JF, Van Wesenbeeck L, Bardiot D, Verschoor EJ, Verstrepen BE, Fagrouch Z, Putnak JR, Kiemel D, Ackaert O, Straetemans R, Lachau-Durand S, Geluykens P, Crabbe M, Thys K, Stoops B, Lenz O, Tambuyzer L, De Meyer S, Dallmeier K, McCracken MK, Gromowski GD, Rutvisuttinunt W, Jarman RG, Karasavvas N, Touret F, Querat G, de Lamballerie X, Chatel-Chaix L, Milligan GN, Beasley DWC, Bourne N, Barrett ADT, Marchand A, Jonckers THM, Raboisson P, Simmen K, Chaltin P, Bartenschlager R, Bogers WM, Neyts J, and Van Loock M
- Subjects
- Animals, Humans, Mice, Clinical Trials, Phase I as Topic, Dose-Response Relationship, Drug, Drug Resistance, Viral, In Vitro Techniques, Molecular Targeted Therapy, Protein Binding drug effects, Virus Replication, Antiviral Agents adverse effects, Antiviral Agents pharmacology, Antiviral Agents therapeutic use, Dengue drug therapy, Dengue prevention & control, Dengue virology, Dengue Virus classification, Dengue Virus drug effects, Primates virology, Viral Nonstructural Proteins antagonists & inhibitors, Viral Nonstructural Proteins metabolism
- Abstract
Dengue is a major health threat and the number of symptomatic infections caused by the four dengue serotypes is estimated to be 96 million
1 with annually around 10,000 deaths2 . However, no antiviral drugs are available for the treatment or prophylaxis of dengue. We recently described the interaction between non-structural proteins NS3 and NS4B as a promising target for the development of pan-serotype dengue virus (DENV) inhibitors3 . Here we present JNJ-1802-a highly potent DENV inhibitor that blocks the NS3-NS4B interaction within the viral replication complex. JNJ-1802 exerts picomolar to low nanomolar in vitro antiviral activity, a high barrier to resistance and potent in vivo efficacy in mice against infection with any of the four DENV serotypes. Finally, we demonstrate that the small-molecule inhibitor JNJ-1802 is highly effective against viral infection with DENV-1 or DENV-2 in non-human primates. JNJ-1802 has successfully completed a phase I first-in-human clinical study in healthy volunteers and was found to be safe and well tolerated4 . These findings support the further clinical development of JNJ-1802, a first-in-class antiviral agent against dengue, which is now progressing in clinical studies for the prevention and treatment of dengue., (© 2023. The Author(s).)- Published
- 2023
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6. Current strategies in diagnostics and therapeutics against novel coronavirus disease (COVID-19).
- Author
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Alotaibi F
- Subjects
- Humans, SARS-CoV-2, COVID-19 Testing, Antiviral Agents therapeutic use, COVID-19 diagnosis
- Abstract
The epidemic of COVID-19 spread quickly through China and engulfed all of the countries across the globe. Several advances have been made in understanding the novel coronavirus's pathophysiology and in the development of newer diagnostics with pinpoint accuracy. Several newer therapeutic methods have either been accepted or are awaiting acceptance. In many countries, vaccination programs have been rolled out. Despite all these efforts, coronavirus still exists, though with lesser propensity. Multiple new forms of the novel coronavirus unexpectedly appeared in various areas of the world, undermining previously existing diagnosis and care protocols. This article highlights our understanding of the novel coronavirus's symptoms in brief, pathogenesis, diagnostics, and therapeutic strategies to contain COVID-19. The clinical findings, including serological, radiological, and other advanced diagnostic strategies, contributed much to control the disease. To date, supportive interventions have been used in tandem with potent antiviral therapies such as remdesivir, lopinavir/ritonavir, or corticosteroids with a level of trust in the care of COVID-19 patients. However, in several areas of the world, vaccination initiatives took place; the vaccines' safety and efficacy to control the outbreak is yet to be identified. This review concludes that improvement in therapies and diagnostics for COVID-19 must continually be explored as new variants constantly emerge., (© 2022 Faisal Alotaibi., published by Sciendo.)
- Published
- 2021
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7. Brief Report: HCV Universal Test-and-Treat With Direct Acting Antivirals for Prisoners With or Without HIV: A Prison Health Care Workers-Led Model for HCV Microelimination in Thailand.
- Author
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Supanan R, Han WM, Harnpariphan W, Ueaphongsukkit T, Ubolyam S, Sophonphan J, Tangkijvanich P, Thanprasertsuk S, and Avihingsanon A
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- Adult, Continuity of Patient Care, Female, HIV Infections complications, HIV Infections drug therapy, HIV Infections epidemiology, Health Personnel, Hepacivirus genetics, Hepatitis C diagnosis, Hepatitis C drug therapy, Hepatitis C, Chronic diagnosis, Hepatitis C, Chronic epidemiology, Humans, Male, Middle Aged, Sustained Virologic Response, Thailand epidemiology, Treatment Outcome, Antiviral Agents therapeutic use, Hepacivirus isolation & purification, Hepatitis C, Chronic drug therapy, Mass Screening methods, Prisoners, Prisons
- Abstract
Background: This study investigated the sustained virologic responses (SVRs) among prisoners with hepatitis C virus (HCV) using universal test-and-treat approach by prison health care workers in a central male prison in Thailand., Methods: A universal HCV screening was conducted in a maximum-security central prison (Klong Prem Central Prison) in Thailand. HCV RNA-confirmed prisoners were treated with generic sofosbuvir/velpatasvir by prison health care workers, regardless of their HCV genotypes and duration of prison sentences. We evaluated the SVR rates at 12 weeks after completing direct acting antivirals (DAA) treatment., Results: A total of 68 prisoners with detectable HCV RNA received DAA treatment. The median age and duration of prison sentences were 44 years (interquartile range, 41-53) and 25 (interquartile range, 19-33) years, respectively. Twenty-five percentage of the participants was coinfected with HIV, and 6% of the participants was coinfected with hepatitis B virus. Among all prisoners who received DAA treatment, 20 (29%) had genotype (GT)-1a, 3 (4%) had GT-1b, 22 (32%) had GT-3a, 3 (4%) had GT-3b, and 7 (10%) had GT-6. Overall, improvements in liver biomarkers were seen after HCV treatment, and SVR was achieved in 97% of the participants with per-protocol analysis and in 90% of the participants with intention-to-treat analysis., Conclusions: HCV treatment using DAA among prisoners through universal test-and-treat approach led by prison health care workers is highly effective and safe, and such model can potentially help to facilitate the goals of HCV microelimination among prisoners in Thailand., Competing Interests: P.T. received funding from The Thailand Research Fund (TRF) Senior Research Scholar (RTA6280004), Center of Excellence in Hepatitis and Liver Cancer, Faculty of Medicine, Chulalongkorn University. T.U. is supported by Second Century Fund (C2F), Chulalongkorn University. The remaining authors have no conflicts of interest to disclose., (Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2021
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8. Treatment of children with COVID-19: update of the Italian Society of Pediatric Infectious Diseases position paper.
- Author
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Venturini, Elisabetta, Montagnani, Carlotta, Garazzino, Silvia, Donà, Daniele, Pierantoni, Luca, Lo Vecchio, Andrea, Krzysztofiak, Andrzej, Nicolini, Giangiacomo, Bianchini, Sonia, Galli, Luisa, Villani, Alberto, and Gattinara, Guido Castelli
- Subjects
METHYLPREDNISOLONE ,COVID-19 ,COMMUNICABLE diseases ,DEXAMETHASONE ,PEDIATRICS ,ANTIVIRAL agents ,MONOCLONAL antibodies ,SEVERITY of illness index ,CONVALESCENT plasma ,OXYGEN therapy ,PREDNISONE ,CHILDREN - Published
- 2021
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9. Salvianolic acid A inhibits pseudorabies virus infection by directly inactivating the virus particle.
- Author
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Chen Z, Li D, Wang T, Li Y, Qin P, Zhu H, Zhang M, Li W, Yu L, Duan H, Chen L, Li Y, and Zheng G
- Subjects
- Animals, Mice, Caffeic Acids pharmacology, Lactates pharmacology, Virus Internalization drug effects, Virion drug effects, Swine, Virus Attachment drug effects, Cell Line, Female, Herpesvirus 1, Suid drug effects, Antiviral Agents pharmacology, Pseudorabies drug therapy, Pseudorabies virology
- Abstract
Background: Pseudorabies virus (PRV), a member of the family Herpesviridae, is responsible for significant economic losses in the pig industry and has recently been associated with human viral encephalitis, leading to severe neurological symptoms post-recovery. Despite the widespread impact of PRV, there are currently no approved effective drugs for treating PRV-related diseases in humans or pigs. Therefore, the exploration and discovery of safe and effective drugs for the prevention and treatment of PRV infection is of paramount importance., Purpose: The objective of this study is to screen and identify natural compounds with antiviral activity against PRV., Methods: First, we used a strain of PRV with green fluorescent protein (PRV-GFP) to screen a natural product chemical library to identify potential antiviral drugs. Next, we assessed the antiviral abilities of salvianolic acid A (SAA) in vitro using virus titer assay, qPCR, and IFA. We investigated the mechanisms of SAA's antiviral activity through viral attachment, internalization, inactivation, and nuclease digestion assay. Finally, we evaluated the efficacy of SAA in inactivating PRV using mice as the experimental subjects., Results: This study screened 206 natural compounds for anti-PRV activity in vitro, resulting in the identification of seven potential antiviral agents. Notably, SAA emerged as a promising candidate with significant anti-PRV activity. The mechanism of action may be that SAA can directly inactivate the virus by disrupting viral envelope. In vivo experiments have shown that pre-incubation of SAA and PRV can effectively inhibit the infectivity and pathogenicity of PRV in mice., Conclusion: This study offers valuable insights into the antiviral properties of SAA, potentially informing strategies for controlling PRV epidemics and treating related diseases in both humans and animals., Competing Interests: Declaration of competing interest The authors declare that they have no known competing fnancial interests or personal relationships that could have appeared to infuence the work reported in this paper., (Copyright © 2024 Elsevier GmbH. All rights reserved.)
- Published
- 2024
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10. Potential of 6'‑hydroxy justicidin B from Justicia procumbens as a therapeutic agent against coronavirus disease 2019.
- Author
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Yoo MH, Eom HY, Im WJ, Lee BS, Han KH, Seo JW, Hwang Y, Youm J, Lee S, Kim S, Ko KC, and Kim YB
- Subjects
- Animals, Vero Cells, Chlorocebus aethiops, Humans, Ferrets, Male, Lignans pharmacology, Lignans therapeutic use, Alanine analogs & derivatives, Alanine pharmacology, Alanine therapeutic use, Female, Adenosine Monophosphate analogs & derivatives, Adenosine Monophosphate pharmacology, Adenosine Monophosphate therapeutic use, COVID-19, Dogs, Dioxolanes, Antiviral Agents pharmacology, Antiviral Agents therapeutic use, COVID-19 Drug Treatment, SARS-CoV-2 drug effects, Justicia chemistry
- Abstract
Background: Since the onset of the coronavirus disease 2019 (COVID-19) pandemic, remarkable advances have been made in vaccine development to reduce mortality. However, therapeutic interventions for COVID-19 are comparatively limited despite these intensive efforts. Furthermore, the rapid mutation capability of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a characteristic of its RNA structure, has led to the emergence of multiple variants, necessitating a shift from a predominantly vaccine-centric approach to one that encompasses therapeutic strategies. 6'-Hydroxy justicidin B (6'-HJB), an arylnaphthalene lignan isolated from Justicia procumbens, a traditional Chinese medicine, is known for its antiviral properties., Hypothesis/purpose: The aim of the present study was to assess the effectiveness and safety of 6'-HJB against SARS-CoV-2 in order to determine its potential as a therapeutic agent against COVID-19., Methods: The efficacy of 6'-HJB was evaluated both in vitro using Vero and Calu-3 cell lines and in vivo using ferrets. The safety assessment included toxicokinetics, safety pharmacology, and Good Laboratory Practice (GLP)-compliant toxicity evaluations following single- and repeated-dose toxicity studies in dogs., Results: The anti-SARS-CoV-2 efficacy of 6'-HJB was evaluated through dose-response curve (DRC) analysis using immunofluorescence; 6'-HJB demonstrated superior inhibition of SARS-CoV-2 growth and lower cytotoxicity than remdesivir. In SARS-CoV-2-infected ferret, 6'-HJB showed efficacy comparable to that of the positive control, Truvada. Further GLP toxicity studies corroborated the safety profile of 6'-HJB. Single-dose and 4-week repeated oral toxicity studies in Beagle dogs demonstrated minimal harmful effects at the highest dosages. The lethal dose of 6'-HJB exceeded 2,000 mg kg
-1 in Beagle dogs. Toxicokinetic and GLP safety pharmacology studies demonstrated no adverse effects of 6'-HJB on metabolic processes, respiratory or central nervous systems, or cardiac functions., Conclusion: This research highlights both the antiviral efficacy and safety profile of 6'-HJB, underscoring its potential as a novel COVID-19 treatment option. The potential of 6'-HJB was demonstrated using modern scientific methodologies and standards., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier GmbH.. All rights reserved.)- Published
- 2024
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11. Effects of the oxoaporphine alkaloid hernandonine on dengue virus. Evidence for its mechanisms of action.
- Author
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Liao YC, Yeh CC, Chueh YF, Huang MS, Wu JS, Wen YX, Chang YT, Lai YR, Chen JJ, and Chang TH
- Subjects
- Humans, Aporphines pharmacology, Animals, Virus Replication drug effects, Vero Cells, Chlorocebus aethiops, Induced Pluripotent Stem Cells drug effects, Alkaloids pharmacology, Dengue drug therapy, Dengue Virus drug effects, Antiviral Agents pharmacology
- Abstract
Background: Dengue, caused by the dengue virus (Orthoflavivirus dengue, encompassing DENV types 1-4), is a member of the Flaviviridae family. The symptoms of dengue range from subclinical or mild manifestations to potentially fatal complications. The management of severe dengue is exceptionally challenging due to the absence of effective antiviral medications. In this context, natural products, whether in the form of pure compounds or standardized plant extracts, have emerged as a promising source for the development of novel antiviral therapeutics. Hernandonine, an oxoaporphine alkaloid found in Hernandia nymphaeifolia (C. Presl) Kubitzki. serves both as a metabolite and an inhibitor of human immunodeficiency virus type 1 (HIV-1) integrase., Purpose: This study investigated the ability of hernandonine to inhibit DENV infection and explored its potential mechanisms., Study Design: To assess the in vitro anti-DENV activity, cells or induced pluripotent stem cell (iPSC)-derived cerebral organoids were exposed to hernandonine before or after infection with DENV. Along with hernandonine, the endocytosis modulators, genistein, wortmannin, Methyl-β-cyclodextrin (MβCD) and lovastatin, were used in the assays., Methods: The DENV infectivity and virion production in cells or cerebral organoids treated with compounds were determined. Various methods, including cell and cerebral organoids imaging, protein and gene detection were conducted to explore their antiviral mechanisms., Results: The results revealed notable antiviral properties of hernandonine, particularly in inhibiting DENV during the early stages of infection. Mechanistic analysis demonstrated that, akin to genistein, wortmannin, methyl-β-cyclodextrin (MβCD), and lovastatin, hernandonine exerted an influence on cholesterol-rich lipid rafts. It also restrained the pseudopodial movement ability of cells, potentially through the downregulation of cytoskeleton and endocytosis regulatory genes or protein expression. Moreover, hernandonine's virucidal activity was demonstrated. Hernandonine's inhibition of DENV infection was further validated in a disease-relevant iPSC-derived cerebral organoids model, a novel DENV-2 infection system worthy of further application., Conclusion: This study evidenced the potential of hernandonine as a novel candidate in the fight against DENV infection., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper. The authors declare a potential conflict of interest as they have recently applied for a patent related to the findings discussed in this article., (Copyright © 2024 Elsevier GmbH. All rights reserved.)
- Published
- 2024
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12. Antiviral effect of the viroporin inhibitors against Taiwan isolates of infectious bronchitis virus (IBV).
- Author
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Sitinjak MC, Chen JK, Liu FL, Hou MH, Lin SM, Liu HJ, and Wang CY
- Subjects
- Taiwan, Animals, Coronavirus Infections virology, Coronavirus Infections drug therapy, Coronavirus Infections veterinary, Chickens, Viral Envelope Proteins metabolism, Viral Envelope Proteins genetics, Poultry Diseases virology, Poultry Diseases drug therapy, Viroporin Proteins antagonists & inhibitors, Infectious bronchitis virus drug effects, Infectious bronchitis virus genetics, Antiviral Agents pharmacology
- Abstract
Coronaviruses (CoVs) are significant animal and human pathogens, characterized by being enveloped RNA viruses with positive-sense single-stranded RNA. The Coronaviridae family encompasses four genera, among which gammacoronaviruses pose a major threat to the poultry industry, which infectious bronchitis virus (IBV) being the most prominent of these threats. Particularly, IBV adversely affects broiler growth and egg production, causing substantial losses. The IBV strains currently circulating in Taiwan include the IBV Taiwan-I (TW-I) serotype, IBV Taiwan-II (TW-II) serotype, and vaccine strains. Therefore, ongoing efforts have focused on developing novel vaccines and discovering antiviral agents. The envelope (E) proteins of CoVs accumulate in the endoplasmic reticulum-Golgi intermediate compartment prior to virus budding. These E proteins assemble into viroporins, exhibiting ion channel activity that leads to cell membrane disruption, making them attractive targets for antiviral therapy. In this study, we investigated the E proteins of IBV H-120, as well as IBV serotypes TW-I and TW-II. E protein expression resulted in inhibited bacteria growth, increased permeability of bacteria to β-galactosidase substrates, and blocked protein synthesis of bacteria by hygromycin B (HygB). Furthermore, in the presence of E proteins, HygB also impeded protein translation in DF-1 cells and damaged their membrane integrity. Collectively, these findings confirm the viroporin activity of the E proteins from IBV H-120, IBV serotype TW-I, and IBV serotype TW-II. Next, the viroporin inhibitors, 5-(N,N-hexamethylene) amiloride (HMA) and 4,4'-diisothiocyano stilbene-2,2'-disulphonic acid (DIDS) were used to inhibit the viroporin activities of the E proteins of IBV H-120, IBV serotype TW-I, and IBV serotype TW-II. In chicken embryos and chickens infected with IBV serotypes TW-I and IBV TW-II, no survivors were observed at 6 and 11 days post-infection (dpi), respectively. However, treatments with both DIDS and HMA increased the survival rates in infected chicken embryos and chickens and mitigated histopathological lesions in the trachea and kidney. Additionally, a 3D pentameric structure of the IBV E protein was constructed via homology modeling. As expected, both inhibitors were found to bind to the lipid-facing surface within the transmembrane domain of the E protein, inhibiting ion conduction. Taken together, our findings provide comprehensive evidence supporting the use of viroporin inhibitors as promising antiviral agents against IBV Taiwan isolates., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier B.V.)
- Published
- 2024
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13. The potential of Chlorella spp. as antiviral source against African swine fever virus through a virtual screening pipeline.
- Author
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Dulay ANG, de Guzman JCC, Marquez ZYD, Santana ESD, Arce J, and Orosco FL
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- Animals, Swine, Viral Proteins chemistry, Viral Proteins antagonists & inhibitors, Viral Proteins metabolism, Drug Evaluation, Preclinical, African Swine Fever Virus drug effects, African Swine Fever Virus chemistry, Antiviral Agents pharmacology, Antiviral Agents chemistry, Molecular Docking Simulation, Molecular Dynamics Simulation, Chlorella chemistry
- Abstract
African swine fever (ASF) causes high mortality in pigs and threatens global swine production. There is still a lack of therapeutics available, with two vaccines under scrutiny and no approved small-molecule drugs. Eleven (11) viral proteins were used to identify potential antivirals in in silico screening of secondary metabolites (127) from Chlorella spp. The metabolites were screened for affinity and binding selectivity. High-scoring compounds were assessed through in silico ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) predictions, compared to structurally similar drugs, and checked for off-target docking with prepared swine receptors. Molecular dynamics (MD) simulations determined binding stability while binding energy was measured in Molecular Mechanics - Generalized Born Surface Area (MMGBSA) or Poisson-Boltzmann Surface Area (MMPBSA). Only six (6) compounds passed until MD analyses, of which five (5) were stable after 100 ns of MD runs. Of these five compounds, only three had binding affinities that were comparable to or stronger than controls. Specifically, phytosterols 24,25-dihydrolanosterol and CID 4206521 that interact with the RNA capping enzyme (pNP868R), and ergosterol which bound to the Erv-like thioreductase (pB119L). The compounds identified in this study can be used as a theoretical basis for in vitro screening to develop potent antiviral drugs against ASFV., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Fredmoore L. Orosco reports financial support was provided by Philippine Council for Agriculture Aquatic and Natural Resources Research and Development. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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14. Computational discovery of tripeptide inhibitors targeting monkeypox virus A42R profilin-like protein.
- Author
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Pham TT, Thai QM, Tuyen PNK, Phung HTT, and Ngo ST
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- Protein Binding, Oligopeptides chemistry, Oligopeptides pharmacology, Binding Sites, Thermodynamics, Drug Discovery, Molecular Docking Simulation, Molecular Dynamics Simulation, Antiviral Agents chemistry, Antiviral Agents pharmacology, Viral Proteins chemistry, Viral Proteins antagonists & inhibitors, Viral Proteins metabolism, Monkeypox virus chemistry, Monkeypox virus drug effects
- Abstract
Monkeypox is an infectious disease caused by the monkeypox virus (MPXV), a member of the Orthopoxvirus genus closely related to smallpox. The structure of the A42R profilin-like protein is the first and only available structure among MPXV proteins. Biochemical studies of A42R were conducted in the 1990s and later work also analyzed the protein's function in viral replication in cells. This study aims to screen tripeptides for their potential inhibition of the A42R profilin-like protein using computational methods, with implications for MPXV therapy. A total of 8000 tripeptides underwent molecular docking simulations, resulting in the identification of 20 compounds exhibiting strong binding affinity to A42R. To validate the docking results, molecular dynamics simulations and free energy perturbation calculations were performed. These analyses revealed two tripeptides with sequences TRP-THR-TRP and TRP-TRP-TRP, which displayed robust binding affinity to A42R. Markedly, electrostatic interactions predominated over van der Waals interactions in the binding process between tripeptides and A42R. Three A42R residues, namely Glu9, Ser12, and Arg38, appear to be pivotal in mediating the interaction between A42R and the tripeptide ligands. Notably, tripeptides containing two or three tryptophan residues demonstrate a pronounced binding affinity, with the tripeptide comprising three tryptophan amino acids showing the highest level of affinity. These findings offer valuable insights for the selection of compounds sharing a similar structure and possessing a high affinity for A42R, potentially capable of inhibiting its enzyme activity. The study highlights a structural advantage and paves the way for the development of targeted therapies against MPXV infections., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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15. In vitro assessment of the anti-adenoviral activity of artemisinin and its derivatives.
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Yang D, Ning J, Zhang Y, Xu X, Zhang D, Fan H, Wang J, and Lu G
- Subjects
- Humans, Cell Line, Artesunate pharmacology, Epithelial Cells virology, Epithelial Cells drug effects, Adenovirus Infections, Human virology, Adenovirus Infections, Human drug therapy, Artemisinins pharmacology, Antiviral Agents pharmacology, Virus Replication drug effects, Adenoviruses, Human drug effects, Adenoviruses, Human physiology
- Abstract
Adenoviral infections, particularly in children, remain a significant public health issue with no approved targeted treatments. Artemisinin and its derivatives, well-known for their use in malaria treatment, have shown antiviral activities in recent studies. However, their efficacy against human adenovirus (HAdV) remains unexplored. This study aimed to assess the activity of artemisinin and its derivatives against HAdV infection in vitro using cell lines and primary cells. Our data revealed that artemisinin exhibited dose-dependent anti-HAdV activity with no apparent cytotoxicity over a wide concentration range. Mechanistically, artemisinin did not affect viral attachment or entry into target cells, nor the viral genome entry into cell nucleus. Instead, it inhibited HAdV through suppression of viral DNA replication. Comparative analysis with its derivatives, artesunate and artemisone, showed distinct cytotoxicity and anti-adenoviral profiles, with artemisone showing superior efficacy and lower toxicity. Further validation using a primary airway epithelial cell model confirmed the anti-adenoviral activity of both artemisinin and artemisone against different virus strains. Together, our findings suggest that artemisinin and its derivatives may be promising candidates for anti-HAdV treatment., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier B.V.)
- Published
- 2024
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16. Eco-friendly synthesis of silver nanoparticles from peel and juice C. limon and their antiviral efficacy against HSV-1 and SARS-CoV-2.
- Author
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Dell'Annunziata F, Mosidze E, Folliero V, Lamparelli EP, Lopardo V, Pagliano P, Porta GD, Galdiero M, Bakuridze AD, and Franci G
- Subjects
- Humans, Animals, Vero Cells, Chlorocebus aethiops, Citrus chemistry, Plant Extracts pharmacology, Plant Extracts chemistry, Green Chemistry Technology, Fruit and Vegetable Juices analysis, COVID-19 virology, Cell Survival drug effects, Herpesvirus 1, Human drug effects, Metal Nanoparticles chemistry, Antiviral Agents pharmacology, Antiviral Agents chemistry, Antiviral Agents chemical synthesis, Silver pharmacology, Silver chemistry, SARS-CoV-2 drug effects
- Abstract
The growing threat of viral infections requires innovative therapeutic approaches to safeguard human health. Nanomaterials emerge as a promising solution to overcome the limitations associated with conventional therapies. The eco-friendly synthesis of silver nanoparticles (AgNPs) currently represents a method that guarantees antimicrobial efficacy, safety, and cost-effectiveness. This study explores the use of AgNPs derived from the peel (Lp-AgNPs) and juice (Lj-AgNPs) Citrus limon "Ovale di Sorrento", cultivars of the Campania region. The antiviral potential was tested against viruses belonging to the Coronaviridae and Herpesviridae. AgNPs were synthesized by reduction method using silver nitrate solution mixed with aqueous extract of C. limon peel and juice. The formation of Lp-AgNPs and Lj-AgNPs was assessed using a UV-Vis spectrophotometer. The size, ζ-potential, concentration, and morphology of AgNPs were evaluated by dynamic light scattering (DLS), nanoparticle tracking analysis (NTA), and field emission-scanning electron microscopy (FE-SEM). Cytotoxicity was evaluated in a concentration range between 500 and 7.8 µg/mL on VERO-76 and HaCaT cells, with the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium test bromide (MTT). Antiviral activity consisted of virus pre-treatment, co-treatment, cellular pre-treatment, and post-infection tests versus HSV-1 and SARS-CoV-2 at a multiplicity of infections (MOI) of 0.01. Plaque reduction assays and real-time PCR provided data on the antiviral potential of tested compounds. Lp-AgNPs and Lj-AgNPs exhibited spherical morphology with respective diameters of 60 and 92 nm with concentrations of 4.22 and 4.84 × 10
10 particles/mL, respectively. The MTT data demonstrated minimal cytotoxicity, with 50 % cytotoxic concentrations (CC50 ) of Lp-AgNPs and Lj-AgNPs against VERO cells of 754.6 and 486.7 µg/mL. Similarly, CC50 values against HaCaT were 457.3 µg/mL for Lp-AgNPs and 339.6 µg/mL for Lj-AgNPs, respectively. In the virus pre-treatment assay, 90 % inhibitory concentrations of HSV-1 and SARS-CoV-2 were 8.54-135.04 µg/mL for Lp-AgNPs and 6.13-186.77 µg/mL for Lj-AgNPs, respectively. The molecular investigation confirmed the antiviral data, recording a reduction in the UL54 and UL27 genes for HSV-1 and in the Spike (S) gene for SARS-CoV-2, following AgNP exposure. The results of this study suggest that Lp-AgNPs and Lj-AgNPs derived from C. Limon could offer a valid ecological, natural, local and safe strategy against viral infections., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)- Published
- 2024
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17. Transport and retention of COVID-19-related antiviral drugs in saturated porous media under various hydrochemical conditions.
- Author
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Zou Y, Peng P, Zou H, Zhang Y, Chen C, and Huang S
- Subjects
- Porosity, Hydrophobic and Hydrophilic Interactions, Amides chemistry, COVID-19, Hydrogen-Ion Concentration, Silicon Dioxide chemistry, Osmolar Concentration, Adenosine Monophosphate analogs & derivatives, Alanine analogs & derivatives, Water Pollutants, Chemical, Indoles, Sulfides, Antiviral Agents chemistry, Ribavirin, COVID-19 Drug Treatment, SARS-CoV-2, Pyrazines chemistry
- Abstract
Antiviral drugs have garnered considerable attention, particularly in the global battle against the COVID-19 pandemic, amid heightened concerns regarding environmentally acquired antiviral resistance. A comprehensive understanding of their transport in subsurface environments is imperative for accurately predicting their environmental fate and risks. This study investigated the mobility and retention characteristics of six COVID-19 antiviral drugs in saturated quartz sand columns. Results showed that the mobility of the drugs was primarily contingent on their hydrophobicity, with ribavirin and favipiravir exhibiting the highest transportability, while arbidol displaying the greatest retention. The transport characteristics of ribavirin and favipiravir remained largely unaffected by pH, whereas the retention of the other four antivirals remained consistently minimal under alkaline conditions. Elevating ionic strength marginally facilitated the transport of these antivirals, while the presence of Ca
2+ notably enhanced their retention in quartz sand compared to Na+ . Ribavirin and remdesivir warrant particular attention due to their relatively high transportability and propensity for environmentally acquired antiviral resistance. These findings contribute to an enhanced understanding of the leachate potential and transport of COVID-19-related antivirals in sandy porous media, furnishing fundamental data for predicting their environmental fate and associated risks., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2024
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18. FDA-approved antivirals ledipasvir and daclatasvir downregulate the Src-EPHA2-Akt oncogenic pathway in colorectal and triple-negative breast cancer cells.
- Author
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Mezquita B, Reyes-Farias M, and Pons M
- Subjects
- Humans, Animals, Mice, Cell Line, Tumor, NIH 3T3 Cells, Female, Cell Proliferation drug effects, United States Food and Drug Administration, Drug Approval, United States, Benzimidazoles pharmacology, Pyrrolidines pharmacology, Imidazoles pharmacology, Proto-Oncogene Proteins c-akt metabolism, src-Family Kinases metabolism, Fluorenes pharmacology, Antiviral Agents pharmacology, Triple Negative Breast Neoplasms drug therapy, Triple Negative Breast Neoplasms pathology, Triple Negative Breast Neoplasms genetics, Carbamates pharmacology, Down-Regulation drug effects, Valine analogs & derivatives, Valine pharmacology, Colorectal Neoplasms drug therapy, Colorectal Neoplasms pathology, Colorectal Neoplasms genetics, Signal Transduction drug effects
- Abstract
Direct-acting antivirals ledipasvir (LDV) and daclatasvir (DCV) are widely used as part of combination therapies to treat Hepatitis C infections. Here we show that these compounds inhibit the proliferation, invasion, and colony formation of triple-negative MDA-MB-231 breast cancer cells, SRC-transduced SW620 colon cancer cells and SRC- transduced NIH3T3 fibroblasts. DCV also inhibits the expression of PDL-1, which is responsible for resistance to immunotherapy in breast cancer cells. The demonstrated low toxicity in many Hepatitis C patients suggests LDV and DCV could be used in combination therapies for cancer patients. At the molecular level, these direct-acting antivirals inhibit the phosphorylation of Akt and the ephrin type A receptor 2 (EPHA2) by destabilizing a Src-EPHA2 complex, although they do not affect the general kinase activity of Src. Thus, LDV and DCV could be effective drugs for Src-associated cancers without the inherent toxicity of classical Src inhibitors., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper, (Copyright © 2024 The Authors. Published by Elsevier Masson SAS.. All rights reserved.)
- Published
- 2024
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19. Discovery of new quinoline derivatives bearing 1-aryl-1,2,3-triazole motif as influenza H1N1 virus neuraminidase inhibitors.
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Sabt A, Khaleel EF, Shaldam MA, Ebaid MS, Mustafa Badi R, Allayeh AK, Eldehna WM, and Dziadek J
- Subjects
- Structure-Activity Relationship, Molecular Structure, Humans, Microbial Sensitivity Tests, Drug Discovery, Molecular Docking Simulation, Influenza A Virus, H1N1 Subtype drug effects, Influenza A Virus, H1N1 Subtype enzymology, Antiviral Agents pharmacology, Antiviral Agents chemistry, Antiviral Agents chemical synthesis, Quinolines chemistry, Quinolines pharmacology, Quinolines chemical synthesis, Neuraminidase antagonists & inhibitors, Neuraminidase metabolism, Triazoles chemistry, Triazoles pharmacology, Triazoles chemical synthesis, Enzyme Inhibitors pharmacology, Enzyme Inhibitors chemistry, Enzyme Inhibitors chemical synthesis, Dose-Response Relationship, Drug
- Abstract
Sporadically and periodically, influenza outbreaks threaten global health and the economy. Antigen drift-induced influenza virus mutations hamper antiviral drug development. Thus, a novel antiviral agent is urgently needed to address medication inefficacy issues. Herein, sixteen new quinoline-triazole hybrids 6a-h and 9a-h were prepared and evaluated in vitro against the H1N1 virus. In particular, 6d, 6e, and 9b showed promising H1N1 antiviral activity with selective index (SI) CC
50 /IC50 values of 15.8, 37, and 29.15. After that, the inhibition rates for various mechanisms of action (virus replication, adsorption, and virucidal activity) were investigated for the most efficient candidates 6d, 6e, and 9b. Additionally, their ability to inhibit neuraminidase was evaluated. With an IC50 value of 0.30 µM, hybrid 6d demonstrated effective and comparable inhibitory activity to Oseltamivir. Ultimately, molecular modeling investigations, encompassing molecular docking and molecular dynamic simulations, were conducted to provide a scientific basis for the observed antiviral results., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2024
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20. Synthesis of glucosamine-selenium compound and evaluation of its oral toxicity and in vitro anti-hepatitis B virus activity.
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Ding H, Lu X, Ji X, Wang S, Jin J, Zhao M, Hang X, and Zhao L
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- Animals, Mice, Administration, Oral, Male, Selenium chemistry, Selenium pharmacology, Liver drug effects, Liver pathology, Humans, Female, Kidney drug effects, Kidney pathology, Hep G2 Cells, Hepatitis B Surface Antigens metabolism, Hepatitis B virus drug effects, Mice, Inbred ICR, Glucosamine chemistry, Glucosamine pharmacology, Antiviral Agents pharmacology, Antiviral Agents chemical synthesis, Antiviral Agents chemistry, Antiviral Agents toxicity
- Abstract
Selenium supplements are beneficial to human health, however, concerns regarding the toxicity of inorganic selenium have stimulated research on safer organic compounds. The main objective of this study was to develop a novel glucosamine-selenium compound (Se-GlcN), clarify its structure, and subsequently investigate its oral toxicity and in vitro anti-hepatitis B virus (HBV) activity. Electron microscopy, infrared, ultraviolet spectroscopy, nuclear magnetic resonance and thermogravimetric analyses revealed a unique binding mode of Se-GlcN, with the introduction of the Se-O bond at the C6 position, resulting in the formation of two carboxyl groups. In acute toxicity studies, the median lethal dose (LD
50 ) of Se-GlcN in ICR mice was 92.31 mg/kg body weight (BW), with a 95 % confidence interval of 81.88-104.07 mg/kg BW. A 30-day subchronic toxicity study showed that 46.16 mg/kg BW Se-GlcN caused livers and kidneys damage in mice, whereas doses of 9.23 mg/kg BW and lower were safe for the livers and kidneys. In vitro studies, Se-GlcN at 1.25 μg/mL exhibited good anti-HBV activity, significantly reducing HBsAg, HBeAg, 3.5 kb HBV RNA and total HBV RNA by 45 %, 54 %, 84 %, 87 %, respectively. In conclusion, the Se-GlcN synthesized in this study provides potential possibilities and theoretical references for its use as an organic selenium supplement., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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21. Design, synthesis, and biological activities of arecoline derivatives containing 1,3,4-oxadiazole structure.
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Li T, Liu S, Guo X, He X, Lu A, Wang Q, and Wang Z
- Subjects
- Structure-Activity Relationship, Molecular Structure, Dose-Response Relationship, Drug, Microbial Sensitivity Tests, Molecular Docking Simulation, Tobacco Mosaic Virus drug effects, Antiviral Agents pharmacology, Antiviral Agents chemistry, Antiviral Agents chemical synthesis, Oxadiazoles chemistry, Oxadiazoles pharmacology, Oxadiazoles chemical synthesis, Drug Design, Arecoline pharmacology, Arecoline chemical synthesis, Arecoline chemistry
- Abstract
Pesticides play an important role in the development of agriculture, as they can prevent and control crop diseases and pests, improve crop yield and quality. However, the abuse and improper use of pesticides can lead to negative impacts such as environmental pollution and pest resistance issues. There is an urgent need to develop green, safe, and efficient pesticides. In this work, natural product arecoline was selected as parent structure, a series of arecoline derivatives were designed, synthesized, and systematically investigated antiviral activities against tobacco mosaic virus (TMV). These compounds were found to have good to excellent anti-TMV activities for the first time. The antiviral activities of 4a, 4 h, 4 l, 4p, 6a, 6c, and 6f are higher than that of ningnanmycin. Compounds 4 h (EC
50 value 146 µg/mL) and 4p (EC50 value 161 µg/mL) with simple structures and excellent activities emerged as new antiviral candidates. We chose 4 h to further investigate the antiviral mechanism, which revealed that it can cause virus fragmentation by acting on the viral coat protein (CP). We further validated this result through molecular docking. These compounds also displayed broad-spectrum fungicidal activities against 8 plant pathogenic fungi. This work lays the theoretical foundation for the application of arecoline derivatives in the agricultural field., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2024
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22. HIV and influenza fusion peptide interactions with (dis)ordered lipid bilayers: Understanding mechanisms and implications for antimicrobial and antiviral approaches.
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Miłogrodzka I, Le Brun AP, Banaszak Holl MM, and van 't Hag L
- Subjects
- Humans, Orthomyxoviridae drug effects, Orthomyxoviridae metabolism, Quartz Crystal Microbalance Techniques, Lipid Bilayers chemistry, Lipid Bilayers metabolism, HIV Envelope Protein gp41 chemistry, HIV Envelope Protein gp41 metabolism, Antiviral Agents chemistry, Antiviral Agents pharmacology, Antiviral Agents metabolism
- Abstract
The interactions of viral fusion peptides from influenza (E4K and Ac-E4K) and human immunodeficiency virus (gp41 and Ac-gp41) with planar lipid bilayers and monolayers was investigated herein. A combination of surface-sensitive techniques, including quartz crystal microbalance with dissipation (QCM-D), Langmuir-Blodgett area-pressure isotherms with Micro-Brewster angle microscopy, and neutron reflectometry, was employed. Differences in the interactions of the viral fusion peptides with lipid bilayers featuring ordered and disordered phases, as well as lipid rafts, were revealed. The HIV fusion peptide (gp41) exhibited strong binding to the DOPC/DOPS bilayer, comprising a liquid disordered phase, with neutron reflectometry (NR) showing interaction with the bilayer's headgroup area. Conversely, negligible binding was observed with lipid bilayers in a liquid ordered phase. Notably, the influenza peptide (E4K) demonstrated slower binding kinetics with DOPC/DOPS bilayers and distinct interactions compared to gp41, as observed through QCM-D. This suggests different mechanisms of interaction with the lipid bilayers: one peptide interacts more within the headgroup region, while the other is more involved in transmembrane interactions. These findings hold implications for understanding viral fusion mechanisms and developing antimicrobials and antivirals targeting membrane interactions. The differential binding behaviours of the viral fusion peptides underscore the importance of considering membrane composition and properties in therapeutic strategy design., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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23. Antivirals for monkeypox virus: Proposing an effective machine/deep learning framework.
- Author
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Hashemi M, Zabihian A, Hajsaeedi M, and Hooshmand M
- Subjects
- Pyrazines pharmacology, Molecular Docking Simulation, Dibenzothiepins, Amides pharmacology, Ribavirin pharmacology, Triazines pharmacology, Mpox (monkeypox) drug therapy, Mpox (monkeypox) virology, Humans, Machine Learning, Morpholines, Pyridones, Antiviral Agents pharmacology, Deep Learning, Monkeypox virus drug effects, Drug Repositioning methods
- Abstract
Monkeypox (MPXV) is one of the infectious viruses which caused morbidity and mortality problems in these years. Despite its danger to public health, there is no approved drug to stand and handle MPXV. On the other hand, drug repurposing is a promising screening method for the low-cost introduction of approved drugs for emerging diseases and viruses which utilizes computational methods. Therefore, drug repurposing is a promising approach to suggesting approved drugs for the MPXV. This paper proposes a computational framework for MPXV antiviral prediction. To do this, we have generated a new virus-antiviral dataset. Moreover, we applied several machine learning and one deep learning method for virus-antiviral prediction. The suggested drugs by the learning methods have been investigated using docking studies. The target protein structure is modeled using homology modeling and, then, refined and validated. To the best of our knowledge, this work is the first work to study deep learning methods for the prediction of MPXV antivirals. The screening results confirm that Tilorone, Valacyclovir, Ribavirin, Favipiravir, and Baloxavir marboxil are effective drugs for MPXV treatment., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Hashemi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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24. Combination therapy synergism prediction for virus treatment using machine learning models.
- Author
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Majidifar S, Zabihian A, and Hooshmand M
- Subjects
- Humans, Ribavirin therapeutic use, Herpesvirus 1, Human drug effects, Herpesvirus 1, Human physiology, Acyclovir therapeutic use, Acyclovir administration & dosage, Acyclovir pharmacology, Virus Diseases drug therapy, Antiviral Agents therapeutic use, Antiviral Agents pharmacology, Machine Learning, Drug Synergism, Drug Therapy, Combination
- Abstract
Combining different drugs synergistically is an essential aspect of developing effective treatments. Although there is a plethora of research on computational prediction for new combination therapies, there is limited to no research on combination therapies in the treatment of viral diseases. This paper proposes AI-based models for predicting novel antiviral combinations to treat virus diseases synergistically. To do this, we assembled a comprehensive dataset comprising information on viral strains, drug compounds, and their known interactions. As far as we know, this is the first dataset and learning model on combination therapy for viruses. Our proposal includes using a random forest model, an SVM model, and a deep model to train viral combination therapy. The machine learning models showed the highest performance, and the predicted values were validated by a t-test, indicating the effectiveness of the proposed methods. One of the predicted combinations of acyclovir and ribavirin has been experimentally confirmed to have a synergistic antiviral effect against herpes simplex type-1 virus, as described in the literature., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Majidifar et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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25. Utilization of the EpiMed Coronabank Chemical Collection to identify potential SARS-CoV-2 antivirals: in silico studies targeting the nsp14 ExoN domain and PL pro naphthalene binding site.
- Author
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Liang JJ, Pitsillou E, Lau HLY, Mccubbery CP, Gan H, Hung A, and Karagiannis TC
- Subjects
- Binding Sites, Humans, Exoribonucleases metabolism, Exoribonucleases chemistry, Viral Nonstructural Proteins chemistry, Viral Nonstructural Proteins antagonists & inhibitors, Viral Nonstructural Proteins metabolism, Viral Nonstructural Proteins genetics, Naphthalenes chemistry, Naphthalenes pharmacology, Protein Binding, COVID-19 Drug Treatment, Small Molecule Libraries chemistry, Small Molecule Libraries pharmacology, Molecular Dynamics Simulation, Protein Domains, Antiviral Agents chemistry, Antiviral Agents pharmacology, Molecular Docking Simulation, SARS-CoV-2 drug effects
- Abstract
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome encodes 29 proteins including four structural, 16 nonstructural (nsps), and nine accessory proteins (https://epimedlab.org/sars-cov-2-proteome/). Many of these proteins contain potential targetable sites for the development of antivirals. Despite the widespread use of vaccinations, the emergence of variants necessitates the investigation of new therapeutics and antivirals. Here, the EpiMed Coronabank Chemical Collection (https://epimedlab.org/crl/) was utilized to investigate potential antivirals against the nsp14 exoribonuclease (ExoN) domain. Molecular docking was performed to evaluate the binding characteristics of our chemical library against the nsp14 ExoN site. Based on the initial screen, trisjuglone, ararobinol, corilagin, and naphthofluorescein were identified as potential lead compounds. Molecular dynamics (MD) simulations were subsequently performed, with the results highlighting the stability of the lead compounds in the nsp14 ExoN site. Protein-RNA docking revealed the potential for the lead compounds to disrupt the interaction with RNA when bound to the ExoN site. Moreover, hypericin, cyanidin-3-O-glucoside, and rutin were previously identified as lead compounds targeting the papain-like protease (PL
pro ) naphthalene binding site. Through performing MD simulations, the stability and interactions of lead compounds with PLpro were further examined. Overall, given the critical role of the exonuclease activity of nsp14 in ensuring viral fidelity and the multifunctional role of PLpro in viral pathobiology and replication, these nsps represent important targets for antiviral drug development. Our databases can be utilized for in silico studies, such as the ones performed here, and this approach can be applied to other potentially druggable SARS-CoV-2 protein targets., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2024
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26. Necrotizing mpox with persistent microbiological positivity despite the use of tecovirimat: A case report.
- Author
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Salvo PF, Baldin G, Visconti E, and Di Giambenedetto S
- Subjects
- Humans, Mpox (monkeypox) drug therapy, Male, Necrosis, Female, Middle Aged, Antiviral Agents therapeutic use
- Abstract
Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
- Published
- 2024
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27. Novel quinoline substituted autophagy inhibitors attenuate Zika virus replication in ocular cells.
- Author
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Singh S, Ahmad F, Aruri H, Das S, Parajuli P, Gavande NS, Singh PK, and Kumar A
- Subjects
- Humans, Cell Line, Chlorocebus aethiops, Animals, Vero Cells, Zika Virus drug effects, Zika Virus physiology, Autophagy drug effects, Virus Replication drug effects, Antiviral Agents pharmacology, Antiviral Agents chemical synthesis, Antiviral Agents chemistry, Quinolines pharmacology, Quinolines chemistry, Quinolines chemical synthesis, Zika Virus Infection drug therapy, Zika Virus Infection virology
- Abstract
Zika virus (ZIKV) is a re-emerging RNA virus that is known to cause ocular and neurological abnormalities in infants. ZIKV exploits autophagic processes in infected cells to enhance its replication and spread. Thus, autophagy inhibitors have emerged as a potent therapeutic target to combat RNA viruses, with Hydroxychloroquine (HCQ) being one of the most promising candidates. In this study, we synthesized several novel small-molecule quinoline derivatives, assessed their antiviral activity, and determined the underlying molecular mechanisms. Among the nine synthesized analogs, two lead candidates, labeled GL-287 and GL-382, significantly attenuated ZIKV replication in human ocular cells, primarily by inhibiting autophagy. These two compounds surpassed the antiviral efficacy of HCQ and other existing autophagy inhibitors, such as ROC-325, DC661, and GNS561. Moreover, unlike HCQ, these novel analogs did not exhibit cytotoxicity in the ocular cells. Treatment with compounds GL-287 and GL-382 in ZIKV-infected cells increased the abundance of LC3 puncta, indicating the disruption of the autophagic process. Furthermore, compounds GL-287 and GL-382 effectively inhibited the ZIKV-induced innate inflammatory response in ocular cells. Collectively, our study demonstrates the safe and potent antiviral activity of novel autophagy inhibitors against ZIKV., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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28. Antiviral susceptibility of SARS-CoV-2 and influenza viruses from 3 co-infected pediatric patients.
- Author
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Takashita E, Ichikawa M, Fujisaki S, Morita H, Nagata S, Miura H, Watanabe S, Hasegawa H, and Kawaoka Y
- Subjects
- Humans, Child, Male, Child, Preschool, Influenza A Virus, H1N1 Subtype drug effects, Female, Influenza A Virus, H3N2 Subtype drug effects, Influenza A Virus, H3N2 Subtype genetics, Japan epidemiology, COVID-19 Drug Treatment, Influenza, Human drug therapy, Influenza, Human virology, Antiviral Agents therapeutic use, Antiviral Agents pharmacology, Coinfection virology, Coinfection drug therapy, SARS-CoV-2 drug effects, COVID-19 epidemiology, COVID-19 virology
- Abstract
In Japan, influenza activity was low throughout the COVID-19 pandemic until the 2022-23 season, when the first influenza outbreak occurred since the 2020-21 season. In our influenza surveillance during the COVID-19 pandemic, co-infection with SARS-CoV-2 and influenza virus had not been detected; however, in January 2024, we identified three pediatric outpatients co-infected with these viruses: one with SARS-CoV-2 Omicron EG.5 sublineage HK.3 and influenza A(H3N2) and two with SARS-CoV-2 Omicron BA.2.86 sublineage JN.1.5 and influenza A(H1N1)pdm09. We evaluated the susceptibility of SARS-CoV-2 against RNA-dependent RNA polymerase inhibitors (remdesivir and molnupiravir) and 3C-like protease inhibitors (nirmatrelvir and ensitrelvir), and that of influenza viruses against neuraminidase inhibitors (oseltamivir, peramivir, zanamivir, and laninamivir) and the cap-dependent endonuclease inhibitor baloxavir. All viruses tested were susceptible to these antiviral drugs and did not possess amino acid substitutions associated with reduced antiviral susceptibility. The patients were treated with anti-influenza drugs and did not develop severe symptoms despite the co-infection. Since SARS-CoV-2 and influenza viruses continue to evolve, continuous monitoring of their circulation remains essential to assess public health measures and support clinical management., Competing Interests: Declarations of competing interest Yoshihiro Kawaoka has received collaborative research funds from FUJIFILM Toyama Chemical Co. LTD, Shionogi & Co. LTD, and Daiichi Sankyo Pharmaceutical and is a founder of FluGen. Other authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
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29. Identification of new benzofuran derivatives as STING agonists with broad-spectrum antiviral activity.
- Author
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Paulis A, Onali A, Vidalain PO, Lotteau V, Jaquemin C, Corona A, Distinto S, Delogu GL, and Tramontano E
- Subjects
- Humans, HEK293 Cells, SARS-CoV-2 drug effects, Animals, Molecular Docking Simulation, Interferon-beta genetics, Cell Line, Chlorocebus aethiops, Vero Cells, Benzofurans pharmacology, Benzofurans chemistry, Antiviral Agents pharmacology, Antiviral Agents chemistry, Virus Replication drug effects, Membrane Proteins genetics, Membrane Proteins metabolism
- Abstract
The Stimulator of Interferon Genes (STING) is involved in cytosolic DNA sensing and type I Interferons (IFN-I) induction. Aiming to identify new STING agonists with antiviral activity and given the known biological activity of benzothiazole and benzimidazole derivatives, a series of benzofuran derivatives were tested for their ability to act as STING agonists, induce IFN-I and inhibit viral replication. Compounds were firstly evaluated in a gene reporter assay measuring luciferase activity driven by the human IFN-β promoter in cells expressing exogenous STING (HEK293T). Seven of them were able to induce IFN-β transcription while no induction of the IFN promoter was observed in the presence of a mutated and inactive STING, showing specific protein-ligand interaction. Docking studies were performed to predict their putative binding mode. The best hit compounds were then tested on human coronavirus 229E replication in BEAS-2B and MRC-5 cells and three derivatives showed EC
50 values in the μM range. Such compounds were also tested on SARS-CoV-2 replication in BEAS-2B cells and in Calu-3 showing they can inhibit SARS-CoV-2 replication at nanomolar concentrations. To further confirm their IFN-dependent antiviral activity, compounds were tested to verify their effect on phospho-IRF3 nuclear localization, that was found to be induced by benzofuran derivatives, and SARS-CoV-2 replication in Vero E6 cells, lacking IFN production, founding them to be inactive. In conclusion, we identified benzofurans as STING-dependent immunostimulatory compounds and host-targeting inhibitors of coronaviruses representing a novel chemical scaffold for the development of broad-spectrum antivirals., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2024
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30. Development of a sensitive high-throughput enzymatic assay capable of measuring sub-nanomolar inhibitors of SARS-CoV2 Mpro.
- Author
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Kovar P, Richardson PL, Korepanova A, Afanador GA, Stojkovic V, Li T, Schrimpf MR, Ng TI, Degoey DA, Gopalakrishnan SM, and Chen J
- Subjects
- Humans, Protease Inhibitors pharmacology, Protease Inhibitors chemistry, COVID-19 virology, COVID-19 Drug Treatment, SARS-CoV-2 drug effects, SARS-CoV-2 enzymology, High-Throughput Screening Assays methods, Coronavirus 3C Proteases antagonists & inhibitors, Coronavirus 3C Proteases metabolism, Coronavirus 3C Proteases chemistry, Antiviral Agents pharmacology, Antiviral Agents chemistry, Enzyme Assays methods
- Abstract
The SARS-CoV-2 main protease (Mpro) is essential for viral replication because it is responsible for the processing of most of the non-structural proteins encoded by the virus. Inhibition of Mpro prevents viral replication and therefore constitutes an attractive antiviral strategy. We set out to develop a high-throughput Mpro enzymatic activity assay using fluorescently labeled peptide substrates. A library of fluorogenic substrates of various lengths, sequences and dye/quencher positions was prepared and tested against full length SARS-CoV-2 Mpro enzyme for optimal activity. The addition of buffers containing strongly hydrated kosmotropic anion salts, such as citrate, from the Hofmeister series significantly boosted the enzyme activity and enhanced the assay detection limit, enabling the ranking of sub-nanomolar inhibitors without relying on the low-throughput Morrison equation method. By comparing cooperativity in citrate or non-citrate buffer while titrating the Mpro enzyme concentration, we found full positive cooperativity of Mpro with citrate buffer at less than one nanomolar (nM), but at a much higher enzyme concentration (∼320 nM) with non-citrate buffer. In addition, using a tight binding Mpro inhibitor, we confirmed there was only one active catalytical site in each Mpro monomer. Since cooperativity requires at least two binding sites, we hypothesized that citrate facilitates dimerization of Mpro at sub-nanomolar concentration as one of the mechanisms enhances Mpro catalytic efficiency. This assay has been used in high-throughput screening and structure activity relationship (SAR) studies to support medicinal chemistry efforts. IC
50 values determined in this assay correlates well with EC50 values generated by a SARS-CoV-2 antiviral assay after adjusted for cell penetration., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier Inc.)- Published
- 2024
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31. Virucidal and biodegradable specialty cellulose nonwovens as personal protective equipment against COVID-19 pandemic
- Author
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Qiang Yong, Huining Xiao, Ling Zheng, Zhenghong Yuan, Xiangyu Jin, Chao Deng, Farzad Seidi, and Chengcheng Li
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Materials science ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,02 engineering and technology ,010402 general chemistry ,Antiviral Agents ,01 natural sciences ,chemistry.chemical_compound ,Face mask ,Nonwoven ,Humans ,Antiviral ,Cellulose ,Pandemics ,Personal Protective Equipment ,Personal protective equipment ,ComputingMethodologies_COMPUTERGRAPHICS ,Multidisciplinary ,SARS-CoV-2 ,COVID-19 ,021001 nanoscience & nanotechnology ,Pulp and paper industry ,Anti-Bacterial Agents ,0104 chemical sciences ,3. Good health ,Antibacterial ,Face masks ,Polyhexamethylene guanidine ,chemistry ,13. Climate action ,Original Article ,0210 nano-technology - Abstract
Graphical abstract, Introduction Face masks are regarded as effective Personal Protective Equipment (PPE) during the COVID-19 pandemic. However, the dominant polypropylene (PP)-based masks are devoid of antiviral/antibacterial activities and create enormous environmental burdens after disposal. Objectives Here we report a facile and potentially scalable method to fabricate biodegradable, breathable, and biocidal cellulose nonwovens (BCNWs) to address both environmental and hygienic problems of commercially available face masks. Methods TEMPO-oxidized cellulose nonwovens are rendered antiviral/antibacterial via covalent bonding with disinfecting polyhexamethylene guanidine or neomycin sulfate through carbodiimide coupling chemistry. Results The obtained results showed that the BCNWs have virucidal rate of >99.14%, bactericidal efficiency of >99.51%, no leaching-out effect, and excellent air permeability of >1111.5 mm s−1. More importantly, the as-prepared BCNWs can inactivate SARS-CoV-2 instantly. Conclusions This strategy provides a new platform for the green fabrication of multifunctional cellulose nonwovens as scalable bio-protective layers with superior performance for various PPE in fighting COVID-19 or future pandemics. Additionally, replacing the non-biodegradable non-antimicrobial PP-based masks with the cellulose-based masks can reduce the plastic wastes and lower the greenhouse gas production from the incineration of disposed masks.
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- 2022
32. Phenolic compounds of Phellinus spp. with antibacterial and antiviral activities
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Francisco Javier Vazquez-Armenta, Juan Manuel Leyva, Veronica Mata-Haro, Gustavo A. Gonzalez-Aguilar, Manuel R. Cruz-Valenzuela, Martin Esqueda, Aldo Gutierrez, Filomena Nazzaro, Florinda Fratianni, Rigoberto Gaitán-Hernández, and J. Fernando Ayala-Zavala
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Phellinus ,Phenols ,Food Microbiology ,Media Technology ,Biotechnology and Industrial Microbiology - Research Paper ,Escherichia coli O157 ,Antiviral Agents ,Listeria monocytogenes ,Microbiology ,Anti-Bacterial Agents - Abstract
Phellinus Quél is one of the largest genera of Hymenochaetaceae; it comprises about 220 species widely distributed on Earth. Most Phellinus species are lignicolous mushrooms that accumulate bioactive compounds. This research studied the phenolic composition of Phellinus spp. and their relationship with antibacterial and antiviral capacity. Phenolics were extracted from Phellinus badius, P. fastuosus, and P. grenadensis; their antiviral and antibacterial activities were evaluated against Listeria monocytogenes, Staphylococcus aureus, Salmonella enterica, and Escherichia coli O157: H7; and the bacteriophages MS2 and Φ- × 174. Gallic acid, chlorogenic acid, caffeic acid, epicatechin, ferulic acid, catechin, 1,3-dicaffeoylquinic acid, p-coumaric acid, and rutin were found in different proportions among Phellinus spp. Total phenolic content ranged from 96 to 209 mg GAE/g, and total flavonoids from 10 to 27 QE/g. The minimum inhibitory concentrations of P. badius, P. grenadensis, and P. fastuosus against E. coli O157: H7 were 13, 20, and 27 mg/mL, against S. enterica were 20, 30, and 15 mg/mL, and against L. monocytogenes were 10, 15, and 25 mg/mL, respectively. The phenolic content was better correlated with the antibacterial effect against E. coli O157: H7 and L. monocytogenes (r = 0.8–0.9), but not against S. enterica (r = 0.05). The antiviral activity of the extracts (0.9 mg/mL) was 29 to 41% against MS2 and 27 to 38% for Φ-X174 virus (r = 0.8–0.9). In silico analysis showed binding energy values of − 7.9 and − 4.8 kcal/mol between the identified phenolic compounds and the M and G proteins of each virus. The antibacterial and antiviral properties of Phellinus species were correlated with the phenolic content.
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- 2022
33. The discovery of herbal drugs and natural compounds as inhibitors of SARS-CoV-2 infection in vitro
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Ngwe Tun, Mya Myat, Toume, Kazufumi, Luvai, Elizabeth, Nwe, Khine Mya, Mizukami, Shusaku, Hirayama, Kenji, Komatsu, Katsuko, and Morita, Kouichi
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Original Paper ,COVID-19 Vaccines ,SARS-CoV-2 ,viruses ,COVID-19 ,Quercus bark ,Antiviral Agents ,Pharmaceutical Preparations ,Humans ,Molecular Medicine ,Baicalin ,Polygala root ,Areca ,Glabridin - Abstract
The emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic in 2019 has led to a global health crisis. Mutations of the SARS-CoV-2 genome have impeded the development of effective therapeutics and vaccines against SARS-CoV-2. Natural products are important for discovering therapeutics to treat the 2019 coronavirus disease (COVID-19). In the present study, we investigated the antiviral activity of herbal drug extracts from Polygala Root, Areca, and Quercus Bark and natural compounds derived from herbal drug such as baicalin and glabridin, with IC50 values of 9.5 µg/ml, 1.2 µg/ml, 5.4 µg/ml, 8.8 µM, and 2.5 µM, respectively, against SARS CoV-2 infection in vitro. Certain herbal drug extracts and natural compounds were found to inhibit viral RNA levels and infectious titers of SARS-CoV-2 in a dose-dependent manner. Furthermore, viral protein analyses showed that herbal drug extracts and natural compounds effectively inhibited SARS-CoV-2 in the various entry treatments. Our study revealed that three herbal drugs are good candidates for further in vivo and clinical studies. Supplementary Information The online version contains supplementary material available at 10.1007/s11418-021-01596-w.
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- 2022
34. OTUD7B deubiquitinates SQSTM1/p62 and promotes IRF3 degradation to regulate antiviral immunity
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Weihong Xie, Shuo Tian, Jiahui Yang, Sihui Cai, Shouheng Jin, Tao Zhou, Yaoxing Wu, Zhiyun Chen, Yanqin Ji, and Jun Cui
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Deubiquitinating Enzymes ,viruses ,Lysine ,Green Fluorescent Proteins ,Pathogen-Associated Molecular Pattern Molecules ,Dextrans ,Cell Biology ,Antiviral Agents ,Nucleotidyltransferases ,Immunity, Innate ,I-kappa B Kinase ,Interferon Type I ,Sequestosome-1 Protein ,Autophagy ,Interferon Regulatory Factor-3 ,RNA, Small Interfering ,Molecular Biology ,Ubiquitins ,Research Paper - Abstract
Deubiquitination plays an important role in the regulation of the crosstalk between macroautophagy/autophagy and innate immune signaling, yet its regulatory mechanisms are not fully understood. Here we identify the deubiquitinase OTUD7B as a negative regulator of antiviral immunity by targeting IRF3 (interferon regulatory factor 3) for selective autophagic degradation. Mechanistically, OTUD7B interacts with IRF3, and activates IRF3-associated cargo receptor SQSTM1/p62 (sequestosome 1) by removing its K63-linked poly-ubiquitin chains at lysine 7 (K7) to enhance SQSTM1 oligomerization. Moreover, viral infection increased the expression of OTUD7B, which forms a negative feedback loop by promoting IRF3 degradation to balance type I interferon (IFN) signaling. Taken together, our study reveals a specific role of OTUD7B in mediating the activation of cargo receptors in a substrate-dependent manner, which could be a potential target against excessive immune responses. Abbreviations: Baf A1: bafilomycin A1; CGAS: cyclic GMP-AMP synthase; DDX58/RIG-I: DExD/H-box helicase 58; DSS: dextran sodium sulfate; DUBs: deubiquitinating enzymes; GFP: green fluorescent protein; IFN: interferon; IKKi: IKBKB/IkappaB kinase inhibitor; IRF3: interferon regulatory factor 3; ISGs: interferon-stimulated genes; MAVS: mitochondrial antiviral signaling protein; MOI: multiplicity of infection; PAMPs: pathogen-associated molecular patterns; SeV: Sendai virus; siRNA: small interfering RNA; SQSTM1/p62: sequestosome 1; STING1: stimulator of interferon response cGAMP interactor 1; TBK1: TANK binding kinase 1; Ub: ubiquitin; WT: wild-type; VSV: vesicular stomatitis virus.
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- 2023
35. Evaluating hepatitis C cascade of care surveillance system in Tuscany, Italy, through a population retrospective data-linkage study, 2015–2021.
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Ceccarelli, Luca, Moretti, Giaele, Mazzilli, Sara, Petri, Davide, Corazza, Ilaria, Rizzo, Caterina, Lucenteforte, Ersilia, Vainieri, Milena, Seghieri, Chiara, and Tavoschi, Lara
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HEPATITIS C ,HEPATITIS C virus ,MEDICAL screening ,ANTIVIRAL agents ,HEALTH services accessibility - Abstract
This comprehensive retrospective data-linkage study aimed at evaluating the impact of Direct-Acting Antivirals (DAAs) on Hepatitis C Virus (HCV) testing, treatment trends, and access to care in Tuscany over six years following their introduction. Utilizing administrative healthcare records, our work reveals a substantial increase in HCV tests in 2017, attributed to the decision to provide universal access to treatment. However, despite efforts to eradicate chronic HCV through a government-led plan, the target of treating 6,221 patients annually was not met, and services contracted after 2018, exacerbated by the COVID-19 pandemic. Key findings indicate a higher prevalence of HCV screening among females in the 33–53 age group, influenced by pregnancy-related recommendations, while diagnostic tests and treatment uptake were more common among males. Problematic substance users constituted a significant proportion of those tested and treated, emphasizing their priority in HCV screening. Our paper underscores the need for decentralized HCV models and alternative testing strategies, such as point-of-care assays, especially in populations accessing harm reduction services, communities, and prisons. The study acknowledges limitations in relying solely on administrative records, advocating for improved data access and timely linkages to accurately monitor HCV care cascades and inform regional plans. Despite challenges, the paper demonstrates the value of administrative record linkages in understanding the access to care pathway for hard-to-reach populations. The findings emphasize the importance of the national HCV elimination strategy and the need for enhanced data collection to assess progress accurately, providing insights for future regional and national interventions. [ABSTRACT FROM AUTHOR]
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- 2024
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36. The pH Dependence of Niclosamide Solubility, Dissolution, and Morphology: Motivation for Potentially Universal Mucin-Penetrating Nasal and Throat Sprays for COVID19, its Variants and other Viral Infections
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David Needham
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COVID19 ,Chemistry, Pharmaceutical ,Drug Compounding ,viral infections ,Biological Availability ,Pharmaceutical Science ,Antiviral Agents ,host cell modulation ,universal nasal-throat-spray ,Humans ,Pharmacology (medical) ,Administration, Intranasal ,Aerosols ,Pharmacology ,variants ,pH-dependent-dissolution ,niclosamide-solubility ,Organic Chemistry ,Mucins ,Hydrogen-Ion Concentration ,Viral Load ,COVID-19 Drug Treatment ,Solubility ,Virus Diseases ,Niclosamide ,Pharynx ,Molecular Medicine ,Powders ,Research Paper ,Biotechnology - Abstract
Motivation With the coronavirus pandemic still raging, prophylactic-nasal and early-treatment throat-sprays could help prevent infection and reduce viral load. Niclosamide has the potential to treat a broad-range of viral infections if local bioavailability is optimized as mucin-penetrating solutions that can reach the underlying epithelial cells. Experimental pH-dependence of supernatant concentrations and dissolution rates of niclosamide were measured in buffered solutions by UV/Vis-spectroscopy for niclosamide from different suppliers (AK Sci and Sigma), as precipitated material, and as cosolvates. Data was compared to predictions from Henderson-Hasselbalch and precipitation-pH models. Optical-microscopy was used to observe the morphologies of original, converted and precipitated niclosamide. Results Niclosamide from the two suppliers had different polymorphs resulting in different dissolution behavior. Supernatant concentrations of the “AKSci-polymorph” increased with increasing pH, from 2.53μM at pH 3.66 to 300μM at pH 9.2, reaching 703μM at pH 9.63. However, the “Sigma-polymorph” equilibrated to much lower final supernatant concentrations, reflective of more stable polymorphs at each pH. Similarly, when precipitated from supersaturated solution, or as cosolvates, niclosamide also equilibrated to lower final supernatant concentrations. Polymorph equilibration though was avoided by using a solvent-exchange technique to make the solutions. Conclusions Given niclosamide’s activity as a host cell modulator, optimized niclosamide solutions could represent universal prophylactic nasal and early treatment throat sprays against COVID19, its more contagious variants, and other respiratory viral infections. They are the simplest and potentially most effective formulations from both an efficacy standpoint as well as manufacturing and distribution, (no cold chain). They now just need testing. Supplementary Information The online version contains supplementary material available at 10.1007/s11095-021-03112-x.
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- 2021
37. Long noncoding RNA#45 exerts broad inhibitory effect on influenza a virus replication via its stem ring arms
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Xiufan Liu, Xiaowen Liu, Shunlin Hu, Guoqing Wang, Xiaoquan Wang, Xinxin Zheng, Daxin Peng, Ruyi Gao, Jun Li, Yu Chen, Xinan Jiao, Jiao Hu, Lei Zhang, Min Gu, and Zenglei Hu
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Microbiology (medical) ,replication ,long non-coding rna ,viruses ,Immunology ,Infectious and parasitic diseases ,RC109-216 ,Influenza A Virus, H7N9 Subtype ,Virus Replication ,medicine.disease_cause ,Antiviral Agents ,Microbiology ,Virus ,Cell Line ,Influenza A Virus, H1N1 Subtype ,RNA interference ,Influenza A virus ,medicine ,Humans ,rna-fish ,Polymerase ,antiviral strategy ,Influenza A Virus, H5N1 Subtype ,biology ,RNA ,Virology ,Influenza A virus subtype H5N1 ,influenza a virus ,Infectious Diseases ,Viral replication ,Apoptosis ,biology.protein ,RNA, Long Noncoding ,Parasitology ,Research Article ,Research Paper - Abstract
A growing body of evidence suggests the pivotal role of long non-coding RNA (lncRNA) in influenza virus infection. Based on next-generation sequencing, we previously demonstrated that Lnc45 was distinctively stimulated by H5N1 influenza virus in mice. In this study, we systematically investigated the specific role of Lnc45 during influenza A virus (IAV) infection. Through qRT-PCR, we first demonstrated that Lnc45 is highly up-regulated by different subtypes of IAV strains, including H5N1, H7N9, and H1N1 viruses. Using RNA-FISH and qRT-PCR, we then found that Lnc45 can translocate from nuclear to cytoplasm during H5N1 virus infection. In addition, forced Lnc45 expression dramatically impeded viral replication of H1N1, H5N1, and H7N9 virus, while abolish of Lnc45 expression by RNA interference favored replication of these viruses, highlighting the potential broad antiviral activity of Lnc45 to IAV. Correspondingly, overexpression of Lnc45 inhibited viral polymerase activity and suppressed IAV-induced cell apoptosis. Moreover, Lnc45 significantly restrained nuclear aggregation of viral NP and PA proteins during H5N1 virus infection. Further functional study revealed that the stem ring arms of Lnc45 mainly mediated the antiviral effect. Therefore, we here demonstrated that Lnc45 functions as a broad-spectrum antiviral factor to inhibit influenza virus replication probably through inhibiting polymerase activity and NP and PA nuclear accumulation via its stem ring arms. Our study not only advances our understanding of the complexity of the IAV pathogenesis but also lays the foundation for developing novel anti-IAV therapeutics targeting the host lncRNA.
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- 2021
38. Discovery of potential anti-SARS-CoV-2 drugs based on large-scale screening in vitro and effect evaluation in vivo
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Haoran Peng, Cuiling Ding, Liangliang Jiang, Wanda Tang, Yan Liu, Lanjuan Zhao, Zhigang Yi, Hao Ren, Chong Li, Yanhua He, Xu Zheng, Hailin Tang, Zhihui Chen, Zhongtian Qi, and Ping Zhao
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drug resistance ,drug repurposing ,SARS-CoV-2 ,Antiviral Agents ,General Biochemistry, Genetics and Molecular Biology ,COVID-19 Drug Treatment ,Cricetinae ,hamster model ,Animals ,Humans ,drug screening ,General Agricultural and Biological Sciences ,D614G variant ,General Environmental Science ,Research Paper ,HeLa Cells - Abstract
The coronavirus disease 2019 (COVID-19) pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a global crisis. Clinical candidates with high efficacy, ready availability, and that do not develop resistance are in urgent need. Despite that screening to repurpose clinically approved drugs has provided a variety of hits shown to be effective against SARS-CoV-2 infection in cell culture, there are few confirmed antiviral candidates in vivo. In this study, 94 compounds showing high antiviral activity against SARS-CoV-2 in Vero E6 cells were identified from 2,580 FDA-approved small-molecule drugs. Among them, 24 compounds with low cytotoxicity were selected, and of these, 17 compounds also effectively suppressed SARS-CoV-2 infection in HeLa cells transduced with human ACE2. Six compounds disturb multiple processes of the SARS-CoV-2 life cycle. Their prophylactic efficacies were determined in vivo using Syrian hamsters challenged with SARS-CoV-2 infection. Seven compounds reduced weight loss and promoted weight regain of hamsters infected not only with the original strain but also the D614G variant. Except for cisatracurium, six compounds reduced hamster pulmonary viral load, and IL-6 and TNF-α mRNA when assayed at 4 d postinfection. In particular, sertraline, salinomycin, and gilteritinib showed similar protective effects as remdesivir in vivo and did not induce antiviral drug resistance after 10 serial passages of SARS-CoV-2 in vitro, suggesting promising application for COVID-19 treatment. Supporting Information The supporting information is available online at 10.1007/s11427-021-2031-7. The supporting materials are published as submitted, without typesetting or editing. The responsibility for scientific accuracy and content remains entirely with the authors.
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- 2021
39. Developmental consequences of children born from mothers with telbivudine treatment during late pregnancy: A prospective study with 3-year follow-up
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Ying Zhang, Wei-Hua Cao, Ming-hui Li, Yao Xie, Xiuzhen Cao, Ying Wang, Zhan Zeng, Fangfang Sun, Wei Yi, and Gang Wan
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Microbiology (medical) ,safety ,Pediatrics ,medicine.medical_specialty ,HBsAg ,Immunology ,Gross motor skill ,Infectious and parasitic diseases ,RC109-216 ,Biology ,medicine.disease_cause ,Antiviral Agents ,Nervous System ,Microbiology ,03 medical and health sciences ,Child Development ,Hepatitis B, Chronic ,Telbivudine ,medicine ,Humans ,Prospective Studies ,Pregnancy Complications, Infectious ,neurological development ,030304 developmental biology ,Hepatitis ,Hepatitis B virus ,0303 health sciences ,Pregnancy ,030306 microbiology ,Infant ,Lamivudine ,medicine.disease ,Infectious Disease Transmission, Vertical ,Treatment Outcome ,Infectious Diseases ,HBeAg ,Motor Skills ,Prenatal Exposure Delayed Effects ,DNA, Viral ,telbivudine ,Female ,Parasitology ,chronic hepatitis b ,pregnancy ,Follow-Up Studies ,Research Article ,Research Paper ,medicine.drug - Abstract
We prospectively investigated the neurological development in infants born from mothers treated with telbivudine (LdT) in the third trimester for prevention of hepatitis B virus (HBV) mother-to-infant transmission. Mothers with high HBV load were assigned to either the LdT group (n = 81, 600 mg of LdT each day from gestational week 28 to delivery) or the Control group (n = 39, untreated). Their infants were followed for 36 months to assess physical and neurological developments with Gesell Developmental Schedule tools. At 12 months after birth, the mean scores in the LdT group for gross motor, fine motor, adaptive, linguistic, and personal social domains were similar to those in the Control group. At 36 months, infants in the LdT group had higher mean scores for gross motor than the Control group (98.42 ± 9.69 vs. 94.54 ± 7.48, P = 0.03). In the LdT group, the rates of normal development were higher for gross motor (96.30% vs. 82.05% P = 0.01) and lower for adaptive (74.07% vs. 92.31% P = 0.02). Multivariate regression analyses showed that exposure to LdT during pregnancy was independently associated with infant’s development in gross motor (OR 6.49, 95% CI 1.37–30.20, P = 0.02) and adaptive (OR 0.18, 95% CI 0.05–0.71, P = 0.01) at 36 months. These results suggest that prenatal LdT exposure might affect neurological development in long-term observation. Abbreviations: LdT: telbivudine; HBV: hepatitis B virus; HBsAg: hepatitis B surface antigen; HBeAg: hepatitis Be antigen; HbsAb: hepatitis B surface antibody; ALT: alanine aminotransferase; NA: nucleoside/nucleotide analog; LAM: lamivudine; MTCT: mother-to-child transmission; GDS: Gesell Developmental Schedule; OR: odds ratio; CI: confidence interval; DQ: developmental quotient; RMB: renminbi; BMI: body mass Index; HBIG: hepatitis B immunoglobulin.
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- 2021
40. Outcomes of Corneal Transplantation for Herpetic Keratitis: A Narrative Review.
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Nardella M, Yu AC, Busin M, Rizzo R, and Zauli G
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- Humans, Treatment Outcome, Keratoplasty, Penetrating methods, Simplexvirus physiology, Keratitis, Herpetic surgery, Corneal Transplantation methods, Antiviral Agents therapeutic use
- Abstract
Herpes simplex virus (HSV) is one of the most common etiologic agents of corneal disease and a significant cause of corneal blindness worldwide. Although most cases can be successfully managed with medical therapy, HSV keratitis associated with visually significant stromal scarring often requires corneal transplantation for visual rehabilitation. While penetrating keratoplasty (PK) represented the traditional keratoplasty technique, the past few decades have seen a shift towards lamellar keratoplasty procedures, including deep anterior lamellar keratoplasty and mushroom keratoplasty. This paper describes the current surgical techniques and perioperative antiviral prophylaxis regimen for herpetic keratitis and reviews their postoperative clinical outcomes.
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- 2024
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41. The effect of oral antiviral therapy for COVID-19 in managing non-hospitalized patients with lung cancer.
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Hsu WH, Shiau BW, Tsai YW, Wu JY, Huang PY, Chuang MH, Liu TH, Lai CC, and Weng TC
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- Humans, Male, Female, Retrospective Studies, Middle Aged, Aged, Administration, Oral, Hospitalization statistics & numerical data, COVID-19 mortality, Hydroxylamines therapeutic use, Hydroxylamines administration & dosage, Treatment Outcome, Drug Combinations, Cytidine analogs & derivatives, Antiviral Agents therapeutic use, Antiviral Agents administration & dosage, Lung Neoplasms drug therapy, Lung Neoplasms mortality, Ritonavir therapeutic use, Ritonavir administration & dosage, COVID-19 Drug Treatment, SARS-CoV-2
- Abstract
Backgrounds: The effectiveness of oral antiviral therapy including nirmatrelvir plus ritonavir and molnupiravir in managing COVID-19 among individuals with pre-existing lung cancer was unclear. Therefore, this study was conducted to evaluate the usefulness of antiviral agents in the management of COVID-19 among patients with lung cancer., Methods: Utilizing data from the TriNetX - a global health research network, a retrospective cohort study was conducted involving 2484 patients diagnosed with both lung cancer and COVID-19. Propensity score matching (PSM) was employed to create well-balanced cohorts. The study assessed the primary outcome of all-cause hospitalization or mortality within a 30-day follow-up., Results: After PSM, the oral antiviral group exhibited a significantly lower risk of the primary composite outcome compared to the control group (6.1 % vs. 9.9 %; HR: 0.60; 95 % CI: 0.45-0.80). This association was consistent across various subgroups according to age, sex, vaccine status, type of oral antiviral agent, and lung cancer characteristics. Additionally, the oral antiviral group showed a lower risk of all-cause hospitalization (HR: 0.73; 95 % CI: 0.54-0.99) and a significantly lower risk of mortality (HR: 0.16; 95 % CI: 0.06-0.41)., Conclusion: The study suggests a favorable impact of oral antiviral therapy on the outcomes of COVID-19 in individuals with lung cancer and support the potential utility of oral antiviral agents in improving outcomes in this vulnerable population., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
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- 2024
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42. Early use of oral antiviral drugs and the risk of post COVID-19 syndrome: A systematic review and network meta-analysis.
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Jiang J, Li Y, Jiang Q, Jiang Y, Qin H, and Li Y
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- Humans, Administration, Oral, Drug Combinations, Hydroxylamines therapeutic use, Hydroxylamines administration & dosage, Post-Acute COVID-19 Syndrome, Lactams, Cytidine analogs & derivatives, Nitriles, Proline, Leucine, Antiviral Agents therapeutic use, Antiviral Agents administration & dosage, Ritonavir therapeutic use, Ritonavir administration & dosage, Network Meta-Analysis, COVID-19 Drug Treatment, SARS-CoV-2, COVID-19 epidemiology
- Abstract
Objectives: This study aimed to determine the association of early use of oral antiviral drugs (including nirmatrelvir-ritonavir and molnupiravir) with the risk of post COVID-19 condition (PCC) and compare the possible efficacy of nirmatrelvir-ritonavir and molnupiravir., Methods: PubMed, Web of Science, Embase, Cochrane, MedRxiv, and Psycinfo were searched from inception until November 1, 2023. We included studies that assessed the effect of oral antiviral drugs on the incidence of PCC. Pairwise and network meta-analyses were conducted using a random-effects model. Risk ratios (RRs) for oral antiviral drugs were calculated with a confidence interval (CI)., Results: Nine observational studies containing 866,066 patients were included. Nirmatrelvir-ritonavir and molnupiravir were evaluated in eight and two studies respectively, with both drugs evaluated in one study. Pair-wise meta-analysis showed that early oral antiviral drugs reduced PCC risk (RR 0.77, 95% CI 0.68-0.88). Network meta-analysis showed that nirmatrelvir-ritonavir may perform better than molnupiravir (surface under the cumulative ranking curve: 95.5% vs. 31.6%) at reducing PCC risk., Conclusions: Early use of oral antiviral drugs may potentially protect against developing PCC in non-hospitalized patients with COVID-19. These findings support the standardized administration of oral antiviral drugs in patients during the acute phase of COVID-19 according to the guidelines., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2024
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43. Repurposing anti-cancer porphyrin derivative drugs to target SARS-CoV-2 envelope.
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Mendonça DA, Cadima-Couto I, Buga CC, Arnaut ZA, Schaberle FA, Arnaut LG, Castanho MARB, and Cruz-Oliveira C
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- Humans, Caco-2 Cells, COVID-19 Drug Treatment, Antineoplastic Agents pharmacology, Viral Envelope drug effects, Animals, Chlorocebus aethiops, Vero Cells, COVID-19 virology, Porphyrins pharmacology, SARS-CoV-2 drug effects, Drug Repositioning, Antiviral Agents pharmacology
- Abstract
Antiviral medicines to treat COVID-19 are still scarce. Porphyrins and porphyrin derivatives (PDs) usually present broad-spectrum antiviral activity with low risk of resistance development. In fact, some PDs are clinically approved to be used in anti-cancer photodynamic therapy and repurposing clinically approved PDs might be an alternative to treat COVID-19. Here, we characterize the ability of temoporfin, verteporfin, talaporfin and redaporfin to inactivate SARS-CoV-2 infectious particles. PDs light-dependent and -independent effect on SARS-CoV-2 infectivity were evaluated. PDs photoactivation successfully inactivated SARS-CoV-2 with very low concentrations and light dose. However, only temoporfin and verteporfin inactivated SARS-CoV-2 in the dark, being verteporfin the most effective. PDs treatment reduced viral load in infected Caco-2 cells, while not inducing cytotoxicity. Furthermore, light-independent treatment with temoporfin and verteporfin act on early stages of viral infection. Using lipid vehicles as membrane models, we characterized PDs interaction to the viral envelope. Verteporfin presented the lowest IC50 for viral inactivation and the highest partition coefficients (K
p ) towards lipid bilayers. Curiously, although temoporfin and redaporfin presented similar Kp s, redaporfin did not present light-independent antiviral activity, and only temoporfin and verteporfin caused lipid membrane disorder. In fact, redaporfin is located closer to the bilayer surface, while temoporfin and verteporfin are located closer to the centre. Our results suggest that viral envelope affinity, with penetration and destabilization of the lipid bilayer, seems critical to mediate PDs antiviral activity. Altogether, these findings open new avenues for the off-label application of temoporfin and verteporfin in the systemic treatment of COVID-19., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Masson SAS.. All rights reserved.)- Published
- 2024
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44. Antibody drugs targeting SARS-CoV-2: Time for a rethink?
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Liang L, Wang B, Zhang Q, Zhang S, and Zhang S
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- Humans, Antibodies, Viral therapeutic use, Antibodies, Viral immunology, Animals, Mutation, Antibodies, Monoclonal therapeutic use, SARS-CoV-2 drug effects, SARS-CoV-2 immunology, COVID-19 Drug Treatment, Antibodies, Neutralizing therapeutic use, Antibodies, Neutralizing immunology, COVID-19 immunology, COVID-19 virology, Antiviral Agents therapeutic use, Antiviral Agents pharmacology
- Abstract
The coronavirus disease 2019 (COVID-19) pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) heavily burdens human health. Multiple neutralizing antibodies (nAbs) have been issued for emergency use or tested for treating infected patients in the clinic. However, SARS-CoV-2 variants of concern (VOC) carrying mutations reduce the effectiveness of nAbs by preventing neutralization. Uncoding the mutation profile and immune evasion mechanism of SARS-CoV-2 can improve the outcome of Ab-mediated therapies. In this review, we first outline the development status of anti-SARS-CoV-2 Ab drugs and provide an overview of SARS-CoV-2 variants and their prevalence. We next focus on the failure causes of anti-SARS-CoV-2 Ab drugs and rethink the design strategy for developing new Ab drugs against COVID-19. This review provides updated information for the development of therapeutic Ab drugs against SARS-CoV-2 variants., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Masson SAS.. All rights reserved.)
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- 2024
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45. Clinical outcomes and safety of remdesivir in hospitalized individuals with COVID-19, with or without severe renal impairment.
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Chang MC, Wu PF, Ho YC, Lin WY, Wu CY, Liu SY, Liu CJ, and Lin YT
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- Humans, Male, Female, Aged, Middle Aged, Treatment Outcome, Aged, 80 and over, Retrospective Studies, Taiwan epidemiology, Glomerular Filtration Rate, Adenosine Monophosphate analogs & derivatives, Adenosine Monophosphate therapeutic use, Adenosine Monophosphate adverse effects, Alanine analogs & derivatives, Alanine therapeutic use, Alanine adverse effects, COVID-19 Drug Treatment, Antiviral Agents therapeutic use, Antiviral Agents adverse effects, Renal Insufficiency, SARS-CoV-2, Hospitalization statistics & numerical data, Acute Kidney Injury chemically induced, Acute Kidney Injury mortality, COVID-19 mortality, COVID-19 complications
- Abstract
Background: The use of remdesivir in patients with coronavirus disease 2019 (COVID-19) and severe renal impairment has been approved; however, limited clinical data exist. Accordingly, we aimed to compare outcomes and adverse events associated with remdesivir in hospitalized patients with COVID-19, with and without severe renal impairment., Methods: Hospitalized patients with COVID-19 undergoing a 5-day remdesivir course at Taipei Veterans General Hospital from April 1 to July 31, 2022, were enrolled. Comparative analysis of outcomes and safety between patients with or without severe renal impairment (estimated glomerular filtration rate of < 30 mL/min per 1.73 m
2 ) were conducted. Prognostic factors associated with 28-day mortality in patients with severe renal impairment were investigated using logistic regression analysis., Results: A total of 671 hospitalized patients, including 132 patients with severe renal impairment, who received a 5-day course of remdesivir were analyzed. The 28-day mortality was higher in patients with severe renal impairment than in patients without severe renal impairment (15.2% vs. 7.8%). The proportion of patients with acute kidney injury (AKI) and deteriorated liver function after completing remdesivir therapy was similar between the patients with and without severe renal impairment, and the recovery rate of AKI was similar in both groups. The sequential organ failure assessment score was an independent factor associated with 28-day mortality in patients with severe renal impairment., Conclusions: Remdesivir was well-tolerated in hospitalized patients with COVID-19, regardless of renal function. Our findings support the recent recommendation to administer remdesivir in patients with severe renal impairment., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.)- Published
- 2024
- Full Text
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46. A mini-review of the anti-SARS-CoV-2 potency of Amaryllidaceae alkaloids.
- Author
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Le NT, Janssen K, Kirchmair J, Pieters L, and Tuenter E
- Subjects
- Humans, Structure-Activity Relationship, COVID-19 Drug Treatment, Amaryllidaceae chemistry, Amaryllidaceae Alkaloids pharmacology, Amaryllidaceae Alkaloids chemistry, Antiviral Agents pharmacology, Antiviral Agents chemistry, SARS-CoV-2 drug effects
- Abstract
Background: Nature has perennially served as an infinite reservoir of diverse chemicals with numerous applications benefiting humankind. In recent years, due to the emerging COVID-19 pandemic, there has been a surge in studies on repurposing natural products as anti-SARS-CoV-2 agents, including plant-derived substances. Among all types of natural products, alkaloids remain one of the most important groups with various known medicinal values. The current investigation focuses on Amaryllidaceae alkaloids (AAs) since AAs have drawn significant scientific attention as anti-SARS-CoV-2 agents over the past few years., Purpose and Study Design: This study serves as a mini-review, summarizing recent advances in studying the anti-SARS-CoV-2 potency of AAs, covering two aspects: structure-activity relationship and mechanism of action (MOA)., Methods: The study covers the period from 2019 to 2023. The information in this review were retrieved from common databases including Web of Science, ScienceDirect, PubMed and Google scholar. Reported anti-SARS-CoV-2 potency, cytotoxicity and possible biological targets of AAs were summarized and classified into different skeletal subclasses. Then, the structure-activity relationship (SAR) was explored, pinpointing the key pharmacophore-related structural moieties. To study the mechanism of action of anti-SARS-CoV-2 AAs, possible biological targets were discussed., Results: In total, fourteen research articles about anti-SARS-CoV-2 was selected. From the SAR point of view, four skeletal subclasses of AAs (lycorine-, galanthamine-, crinine- and homolycorine-types) appear to be promising for further investigation as anti-SARS-CoV-2 agents despite experimental inconsistencies in determining in vitro half maximal inhibitory effective concentration (EC
50 ). Narciclasine, haemanthamine- and montanine-type skeletons were cytotoxic and devoid of anti-SARS-CoV-2 activity. The lycorine-type scaffold was the most structurally diverse in this study and preliminary structure-activity relationships revealed the crucial role of ring C and substituents on rings A, C and D in its anti-SARS-CoV-2 activity. It also appears that two enantiomeric skeletons (haemanthamine- and crinine-types) displayed opposite activity/toxicity profiles regarding anti-SARS-CoV-2 activity. Pharmacophore-related moieties of the haemanthamine/crinine-type skeletons were the substituents on rings B, C and the dioxymethylene moiety. All galanthamine-type alkaloids in this study were devoid of cytotoxicity and it appears that varying substituents on rings C and D could enhance the anti-SARS-CoV-2 potency. Regarding MOAs, initial experimental results suggested Mpro and RdRp as possible viral targets. Dual functionality between anti-inflammatory activity on host cells and anti-SARS-CoV-2 activity on the SARS-CoV-2 virus of isoquinoline alkaloids, including AAs, were suggested as the possible MOAs to alleviate severe complications in COVID-19 patients. This dual functionality was proposed to be related to the p38 MAPK signaling pathway., Conclusion: Overall, Amaryllidaceae alkaloids appear to be promising for further investigation as anti-SARS-CoV-2 agents. The skeletal subclasses holding the premise for further investigation are lycorine-, crinine-, galanthamine- and homolycorine-types., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier GmbH.)- Published
- 2024
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47. A high-throughput cell-based screening method for Zika virus protease inhibitor discovery.
- Author
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Anindita PD, Otsuka Y, Lattmann S, Ngo KH, Liew CW, Kang C, Harris RS, Scampavia L, Spicer TP, and Luo D
- Subjects
- Humans, Viral Nonstructural Proteins antagonists & inhibitors, Viral Nonstructural Proteins metabolism, Viral Nonstructural Proteins genetics, Serine Endopeptidases metabolism, Serine Endopeptidases genetics, Animals, Viral Proteases, Nucleoside-Triphosphatase, DEAD-box RNA Helicases, Zika Virus drug effects, High-Throughput Screening Assays methods, Protease Inhibitors pharmacology, Antiviral Agents pharmacology, Drug Discovery methods, Zika Virus Infection virology, Zika Virus Infection drug therapy
- Abstract
Zika virus (ZIKV) continues to pose a significant global public health threat, with recurring regional outbreaks and potential for pandemic spread. Despite often being asymptomatic, ZIKV infections can have severe consequences, including neurological disorders and congenital abnormalities. Unfortunately, there are currently no approved vaccines or antiviral drugs for the prevention or treatment of ZIKV. One promising target for drug development is the ZIKV NS2B-NS3 protease due to its crucial role in the virus life cycle. In this study, we established a cell-based ZIKV protease inhibition assay designed for high-throughput screening (HTS). Our assay relies on the ZIKV protease's ability to cleave a cyclised firefly luciferase fused to a natural cleavage sequence between NS2B and NS3 protease within living cells. We evaluated the performance of our assay in HTS setting using the pharmacologic controls (JNJ-40418677 and MK-591) and by screening a Library of Pharmacologically Active Compounds (LOPAC). The results confirmed the feasibility of our assay for compound library screening to identify potential ZIKV protease inhibitors., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier Inc.)
- Published
- 2024
- Full Text
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48. Doxycycline inhibits neurotropic enterovirus proliferation in vitro.
- Author
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Chi F, Liu X, Li J, Guo M, Zhang Z, Zhou H, Carr MJ, Li Y, and Shi W
- Subjects
- Humans, Enterovirus Infections virology, Enterovirus Infections drug therapy, Enterovirus A, Human drug effects, Enterovirus A, Human physiology, Cell Line, Enterovirus D, Human drug effects, Enterovirus D, Human physiology, Animals, Virus Internalization drug effects, Doxycycline pharmacology, Virus Replication drug effects, Antiviral Agents pharmacology, Enterovirus drug effects, Enterovirus physiology
- Abstract
Human enteroviruses (EVs) represent a global public health concern due to their association with a range of serious pediatric illnesses. Despite the high morbidity and mortality exerted by EVs, no broad-spectrum antivirals are currently available. Herein, we presented evidence that doxycycline can inhibit in vitro replication of various neurotropic EVs, including enterovirus A71 (EV-A71), enterovirus D68 (EV-D68), and coxsackievirus (CV)-A6, in a dose-dependent manner. Further investigations indicated that the drug primarily acted at the post-entry stage of virus infection in vitro, with inhibitory effects reaching up to 89 % for EV-A71 when administered two hours post-infection. These findings provide valuable insights for the development of antiviral drugs against EV infections., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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49. Magnolol against enterovirus 71 by targeting Nrf2-SLC7A11-GSH pathway.
- Author
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Zhao D, Guo X, Lin B, Huang R, Li H, Wang Q, Zeng Y, Shang Y, and Wu Y
- Subjects
- Animals, Mice, Humans, Glutathione metabolism, Virus Replication drug effects, Reactive Oxygen Species metabolism, Enterovirus Infections drug therapy, Enterovirus Infections virology, Signal Transduction drug effects, Chlorocebus aethiops, Vero Cells, Ferroptosis drug effects, Biphenyl Compounds pharmacology, NF-E2-Related Factor 2 metabolism, Lignans pharmacology, Enterovirus A, Human drug effects, Antiviral Agents pharmacology
- Abstract
Enterovirus 71 (EV71), a prominent pathogen associated with hand, foot, and mouth disease (HFMD), has been reported worldwide. To date, the advancement of effective drugs targeting EV71 remains in the preliminary experimental stage. In this study, magnolol demonstrated a significant dose-dependent inhibition of EV71 replication in vitro. It upregulated the overall expression level of nuclear factor erythroid 2 - related factor 2 (Nrf2) and facilitated its nucleus translocation, resulting in the increased expression of various ferroptosis inhibitory genes. This process led to a reduction in reactive oxygen species (ROS) accumulation induced by viral infection. Additionally, magnolol exhibited a broad-spectrum antiviral effect against enteroviruses. Notably, treatment with magnolol substantially enhanced the survival rate of EV71-infected mice, attenuated viral load in heart, liver, brain, and limb tissues, and mitigated tissue inflammation. Taken together, magnolol emerges as a promising candidate for the development of anti-EV71 drugs., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Masson SAS.. All rights reserved.)
- Published
- 2024
- Full Text
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50. In vitro and in vivo antiviral effects of CLEVir-X against porcine reproductive and respiratory syndrome virus.
- Author
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Suh J, Ham S, Kim Y, Kim S, Cho A, Moon H, and Chae C
- Subjects
- Animals, Swine, Virus Replication drug effects, Lung virology, Lung drug effects, Lung pathology, Viral Load drug effects, Administration, Oral, Porcine respiratory and reproductive syndrome virus drug effects, Porcine respiratory and reproductive syndrome virus genetics, Antiviral Agents pharmacology, Porcine Reproductive and Respiratory Syndrome drug therapy, Porcine Reproductive and Respiratory Syndrome virology
- Abstract
The aim of this study was to investigate the in vitro and in vivo antiviral effects of CLEVir-X, against porcine reproductive and respiratory syndrome virus (PRRSV). CLEVir-X is a nucleoside analogue and a dialdehyde form of xanthosine. CLEVir-X demonstrated antiviral action during the in vitro portion of this experiment with its inosine monophosphate dehydrogenase (IMPDH) inhibition against PRRSV. The anti-PRRSV effect of CLEVir-X was recovered through supplementation with guanosine. This suggests that PRRSV replication may be regulated through IMPDH and its guanosine biosynthetic pathway. CLEVir-X treatment in cultures resulted in mutation frequency increase of up to 7.8-fold within the viral genomes (e.g. ORF6) compared to their parallel, untreated cultures. The incorporation of CLEVir-X into the viral genome causes lethal mutagenesis and subsequent decrease in specific infectivity. During the in vivo antiviral experiment, 21-day-old pigs began oral administration of 5 mL of phosphate buffered saline containing CLEVir-X (with purity of 68 % and dosage of 40 mg/kg body weight). This treatment was provided twice daily at 9:00AM and 5:00PM for 14 days. Pigs were simultaneously intranasally inoculated with PRRSV at the beginning of CLEVir-X treatment (21 days of age). Several beneficial effects from the oral administration of CLEVir-X were observed including reduction of body temperature, alleviation of respiratory clinical signs, decreased PRRSV load in both blood and lung tissues, and mitigation of lung interstitial pneumonia lesions. The results of the present study demonstrated that CLEVir-X has mutagenic and nonmutagenic modes of antiviral action against PRRSV based on both in vitro and in vivo antiviral experiments., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
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