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[Display omitted] • Micro-NIR spectrometer was proposed to identify the paper types. • Four machine learning algorithms were discussed in both Micro-NIR and ATR-FTIR. • The performance of Micro-NIR model was better than ATR-FTIR. Quick identification of paper types for customs is extremely crucial. Although there are a variety of researches focus on the discrimination of paper, these techniques either require complex preprocessing or large-scale instruments, which are not suitable for customs environments. In this study, we predicted the type of customs paper by using a Micro-NIR spectrometer, and compared the results with Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy (ATR-FTIR). Four different classification algorithms, including linear and non-linear classifiers: K-nearest neighbor (KNN), soft independent modeling of class analogy (SIMCA), partial least squares discriminant analysis (PLS-DA), and least squares-support vector machine (LS-SVM) were employed to classify the type of paper. 20 groups of datasets were selected by Monte Carlo sampling. For Micro-NIR data, the performances of KNN and LS-SVM were outstanding than SIMCA and PLS-DA, with the average accuracies 96.06% and 98.91%, respectively. The outcome of SIMCA and PLS-DA were similar, with the average accuracies 93.00% and 93.97%. Based on the standard derivation, the best stability of models was LS-SVM (1.06%), followed by PLS-DA (1.12%), KNN (1.22%) and SIMCA (3.07%). Compared with ATR-FTIR, the effects of Micro-NIR were better, which were embodies in the better KNN and SIMCA models, and the comparable LS-SVM model. The result demonstrated that the Micro-NIR combined with machine learning algorithms was an effective method to classify the type of customs paper efficiently and quickly, even better than ATR-FTIR. [ABSTRACT FROM AUTHOR]