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Summary: Rhizomicrobiome plays important roles in plant growth and health, contributing to the sustainable development of agriculture. Plants recruit and assemble the rhizomicrobiome to satisfy their functional requirements, which is widely recognized as the 'cry for help' theory, but the intrinsic mechanisms are still limited.In this study, we revealed a novel mechanism by which plants reprogram the functional expression of inhabited rhizobacteria, in addition to the de novo recruitment of soil microbes, to satisfy different functional requirements as plants grow. This might be an efficient and low‐cost strategy and a substantial extension to the rhizomicrobiome recruitment theory.We found that the plant regulated the sequential expression of genes related to biocontrol and plant growth promotion in two well‐studied rhizobacteria Bacillus velezensis SQR9 and Pseudomonas protegens CHA0 through root exudate succession across the plant developmental stages. Sixteen key chemicals in root exudates were identified to significantly regulate the rhizobacterial functional gene expression by high‐throughput qPCR.This study not only deepens our understanding of the interaction between the plant–rhizosphere microbiome, but also provides a novel strategy to regulate and balance the different functional expression of the rhizomicrobiome to improve plant health and growth. [ABSTRACT FROM AUTHOR]

Efficient root colonization of plant growth‐promoting rhizobacteria is critical for their plant‐beneficial functions. However, the strategy to overcome plant immunity during root colonization is not well understood. In particular, how Bacillus strains cope with plant‐derived reactive oxygen species (ROS), which function as the first barrier of plant defence, is not clear. In the present study, we found that the homolog of flg22 in Bacillus velezensis SQR9 (flg22SQR9) has 78.95% identity to the typical flg22 (flg22P.s.) and induces a significant oxidative burst in cucumber and Arabidopsis. In contrast to pathogenic or beneficial Pseudomonas, live B. velezensis SQR9 also induced an oxidative burst in cucumber. We further found that B. velezensis SQR9 tolerated higher H2O2 levels than Pst DC3000, the pathogen that harbours the typical flg22, and that it possesses the ability to suppress the flg22‐induced oxidative burst, indicating that B. velezensis SQR9 may exploit a more efficient ROS tolerance system than DC3000. Further experimentation with mutagenesis of bacteria and Arabidopsis showed that the two‐component regulatory system, ResDE, in B. velezensis SQR9 is involved in tolerance to plant‐derived oxidative stress, thus contributing to root colonization. This study supports a further investigation of the interaction between beneficial rhizobacteria and plant immunity. The beneficial rhizobacterium Bacillus velezensis SQR9 or its flg22 peptides triggered oxidative burst in cucumber and Arabidopsis. The two‐component regulatory system, ResDE, in B. velezensis SQR9 is involved in tolerance to plant‐derived oxidative stress, thus contributing to root colonization. [ABSTRACT FROM AUTHOR]