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The world's most extensive and active deltas, Louisiana's wetlands, are deteriorating rapidly due to multiple stressors. Their ecological and anthropogenic histories on a multimillennial timescale have not been thoroughly documented. This study investigates hydrological and anthropogenic impacts on southern Louisiana wetlands to guide future efforts toward environmental restoration. A 3.6 m sediment core (JOYWMA) extracted from a freshwater wetland adjacent to Lake Pontchartrain yielded a 5000‐year record. Multiproxy data indicate four distinct stages, with the earliest period representing an oyster reef (~4.5 cal yr bp) marked by elevated Ca and Sr concentrations. Evolution to a freshwater marsh occurred 4.5–4.0 cal yr bp during the St. Bernard delta progradation, marked by increased Zr and Br concentrations. The site transitioned to a lake due to the isolation from the St. Bernard delta and local subsidence (4.0–2.0 cal yr bp), marked by increased Ti, Fe, Mn and K concentrations. The site altered to a cypress swamp after 2.0 cal yr bp due to increased sediment supply during the St. Bernard subdelta progradation. Both natural (delta progradation and subsidence) and anthropogenic (fire, deforestation) stressors have impacted the site over the last 4500 years. Delta‐switching of the Mississippi River caused the significant geomorphological and ecological changes. [ABSTRACT FROM AUTHOR]