9 results on '"Acheson K"'
Search Results
2. Transient vibration and product formation of photoexcited CS2 measured by time-resolved X-ray scattering
- Author
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Gabalski, I, Sere, M, Acheson, K, Allum, F, Boutet, S, Dixit, G, Forbes, R, Glownia, JM, Goff, N, Hegazy, K, Howard, AJ, Liang, M, Minitti, MP, Minns, RS, Natan, A, Peard, N, Rasmus, WO, Sension, RJ, Ware, MR, Weber, PM, Werby, N, Wolf, TJA, Kirrander, A, and Bucksbaum, PH
- Subjects
General Physics and Astronomy ,Physical and Theoretical Chemistry - Abstract
We have observed details of the internal motion and dissociation channels in photoexcited carbon disulfide (CS2) using time-resolved x-ray scattering (TRXS). Photoexcitation of gas-phase CS2 with a 200 nm laser pulse launches oscillatory bending and stretching motion, leading to dissociation of atomic sulfur in under a picosecond. During the first 300 fs following excitation, we observe significant changes in the vibrational frequency as well as some dissociation of the C–S bond, leading to atomic sulfur in the both 1D and 3P states. Beyond 1400 fs, the dissociation is consistent with primarily 3P atomic sulfur dissociation. This channel-resolved measurement of the dissociation time is based on our analysis of the time-windowed dissociation radial velocity distribution, which is measured using the temporal Fourier transform of the TRXS data aided by a Hough transform that extracts the slopes of linear features in an image. The relative strength of the two dissociation channels reflects both their branching ratio and differences in the spread of their dissociation times. Measuring the time-resolved dissociation radial velocity distribution aids the resolution of discrepancies between models for dissociation proposed by prior photoelectron spectroscopy work.
- Published
- 2022
3. Pharmacological profiling of small molecule modulators of the TMEM16A channel and their implications for the control of artery and capillary function.
- Author
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Al-Hosni R, Agostinelli E, Ilkan Z, Scofano L, Kaye R, Dinsdale RL, Acheson K, MacDonald A, Rivers D, Biosa A, Gunthorpe MJ, Platt F, and Tammaro P
- Abstract
Background and Purpose: TMEM16A chloride channels constitute a depolarising mechanism in arterial smooth muscle cells (SMCs) and contractile cerebral pericytes. TMEM16A pharmacology is incompletely defined. We elucidated the mode of action and selectivity of a recently identified positive allosteric modulator of TMEM16A (PAM_16A) and of a range of TMEM16A inhibitors. We also explore the consequences of selective modulation of TMEM16A activity on arterial and capillary function., Experimental Approach: Patch-clamp electrophysiology, isometric tension recordings, live imaging of cerebral cortical capillaries and assessment of cell death were employed to explore the effect of selective pharmacological control of TMEM16A on vascular function., Key Results: In low intracellular free Ca
2+ concentrations ([Ca2+ ]i ), nanomolar concentrations of PAM_16A activated heterologous TMEM16A channels, while being almost ineffective on the closely related TMEM16B channel. In either the absence of Ca2+ or in saturating [Ca2+ ]i , PAM_16A had no effect on TMEM16A currents at physiological potentials. PAM_16A selectively activated TMEM16A currents in SMCs and enhanced aortic contraction caused by phenylephrine or angiotensin-II and capillary (pericyte) constriction evoked by endothelin-1 or oxygen-glucose deprivation (OGD) to simulate cerebral ischaemia. Conversely, selective TMEM16A inhibition with Ani9 facilitated aortic, mesenteric and pericyte relaxation, and protected against OGD-mediated pericyte cell death. Unlike PAM_16A and Ani9, a range of other available modulators were found to interfere with endogenous cationic currents in SMCs., Conclusions and Implications: Arterial tone and capillary diameter can be controlled with TMEM16A modulators, highlighting TMEM16A as a target for disorders with a vascular component, including hypertension, stroke, Alzheimer's disease and vascular dementia., (© 2025 The Author(s). British Journal of Pharmacology published by John Wiley & Sons Ltd on behalf of British Pharmacological Society.)- Published
- 2025
- Full Text
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4. Exploring New Algorithms for Molecular Vibrational Spectroscopy Using Physics-Informed Program Synthesis.
- Author
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Acheson K and Habershon S
- Abstract
Inductive program synthesis (PS) has recently begun to emerge as a useful new approach to automatically generate algorithms in quantum chemistry, as demonstrated in recent applications to the vibrational Schrödinger equation for simple model systems with one or two degrees-of-freedom. Here, we report a new physics-informed approach to inductive PS that is more conducive to the generation of discrete variable representation algorithms for real molecular systems. The new framework ensures separability of the kinetic and potential operators and does not require an exact solution to compare synthesized algorithmic predictions with. Algorithms with a tridiagonal matrix structure are generated via a variational-based stochastic optimization procedure. Crucially, through an extensive testing procedure, we demonstrate that variationally synthesized algorithms perform just as well as those generated using a target function. Assuming a direct product representation of normal coordinates, these algorithms are applied to three triatomic molecules. In total, we identify a set of seven PS algorithms that accurately reproduce the vibrational spectra of H
2 O, NO2 , and SO2 , as predicted by Colbert-Miller and sine-DVR algorithms.- Published
- 2025
- Full Text
- View/download PDF
5. Automatic Clustering of Excited-State Trajectories: Application to Photoexcited Dynamics.
- Author
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Acheson K and Kirrander A
- Abstract
We introduce automatic clustering as a computationally efficient tool for classifying and interpreting trajectories from simulations of photo-excited dynamics. Trajectories are treated as time-series data, with the features for clustering selected by variance mapping of normalized data. The L
2 -norm and dynamic time warping are proposed as suitable similarity measures for calculating the distance matrices, and these are clustered using the unsupervised density-based DBSCAN algorithm. The silhouette coefficient and the number of trajectories classified as noise are used as quality measures for the clustering. The ability of clustering to provide rapid overview of large and complex trajectory data sets, and its utility for extracting chemical and physical insight, is demonstrated on trajectories corresponding to the photochemical ring-opening reaction of 1,3-cyclohexadiene, noting that the clustering can be used to generate reduced dimensionality representations in an unbiased manner.- Published
- 2023
- Full Text
- View/download PDF
6. Robust Inversion of Time-Resolved Data via Forward-Optimization in a Trajectory Basis.
- Author
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Acheson K and Kirrander A
- Abstract
An inversion method for time-resolved data from ultrafast experiments is introduced, based on forward-optimization in a trajectory basis. The method is applied to experimental data from X-ray scattering of the photochemical ring-opening reaction of 1,3-cyclohexadiene and electron diffraction of the photodissociation of CS
2 . In each case, inversion yields a model that reproduces the experimental data, identifies the main dynamic motifs, and agrees with independent experimental observations. Notably, the method explicitly accounts for continuity constraints and is robust even for noisy data.- Published
- 2023
- Full Text
- View/download PDF
7. Transient vibration and product formation of photoexcited CS 2 measured by time-resolved x-ray scattering.
- Author
-
Gabalski I, Sere M, Acheson K, Allum F, Boutet S, Dixit G, Forbes R, Glownia JM, Goff N, Hegazy K, Howard AJ, Liang M, Minitti MP, Minns RS, Natan A, Peard N, Rasmus WO, Sension RJ, Ware MR, Weber PM, Werby N, Wolf TJA, Kirrander A, and Bucksbaum PH
- Abstract
We have observed details of the internal motion and dissociation channels in photoexcited carbon disulfide (CS
2 ) using time-resolved x-ray scattering (TRXS). Photoexcitation of gas-phase CS2 with a 200 nm laser pulse launches oscillatory bending and stretching motion, leading to dissociation of atomic sulfur in under a picosecond. During the first 300 fs following excitation, we observe significant changes in the vibrational frequency as well as some dissociation of the C-S bond, leading to atomic sulfur in the both1 D and3 P states. Beyond 1400 fs, the dissociation is consistent with primarily3 P atomic sulfur dissociation. This channel-resolved measurement of the dissociation time is based on our analysis of the time-windowed dissociation radial velocity distribution, which is measured using the temporal Fourier transform of the TRXS data aided by a Hough transform that extracts the slopes of linear features in an image. The relative strength of the two dissociation channels reflects both their branching ratio and differences in the spread of their dissociation times. Measuring the time-resolved dissociation radial velocity distribution aids the resolution of discrepancies between models for dissociation proposed by prior photoelectron spectroscopy work.- Published
- 2022
- Full Text
- View/download PDF
8. Keeping time in the dark: Potato diel and circadian rhythmic gene expression reveals tissue-specific circadian clocks.
- Author
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Hoopes GM, Zarka D, Feke A, Acheson K, Hamilton JP, Douches D, Buell CR, and Farré EM
- Abstract
The circadian clock is an internal molecular oscillator and coordinates numerous physiological processes through regulation of molecular pathways. Tissue-specific clocks connected by mobile signals have previously been found to run at different speeds in Arabidopsis thaliana tissues. However, tissue variation in circadian clocks in crop species is unknown. In this study, leaf and tuber global gene expression in cultivated potato under cycling and constant environmental conditions was profiled. In addition, we used a circadian-regulated luciferase reporter construct to study tuber gene expression rhythms. Diel and circadian expression patterns were present among 17.9% and 5.6% of the expressed genes in the tuber. Over 500 genes displayed differential tissue specific diel phases. Intriguingly, few core circadian clock genes had circadian expression patterns, while all such genes were circadian rhythmic in cultivated tomato leaves. Furthermore, robust diel and circadian transcriptional rhythms were observed among detached tubers. Our results suggest alternative regulatory mechanisms and/or clock composition is present in potato, as well as the presence of tissue-specific independent circadian clocks. We have provided the first evidence of a functional circadian clock in below-ground storage organs, holding important implications for other storage root and tuberous crops., Competing Interests: The authors declare no conflict of interest associated with the work described in this manuscript.The Authors did not report any conflict of interest., (© 2022 The Authors. Plant Direct published by American Society of Plant Biologists and the Society for Experimental Biology and John Wiley & Sons Ltd.)
- Published
- 2022
- Full Text
- View/download PDF
9. Multichannel photodissociation dynamics in CS 2 studied by ultrafast electron diffraction.
- Author
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Razmus WO, Acheson K, Bucksbaum P, Centurion M, Champenois E, Gabalski I, Hoffman MC, Howard A, Lin MF, Liu Y, Nunes P, Saha S, Shen X, Ware M, Warne EM, Weinacht T, Wilkin K, Yang J, Wolf TJA, Kirrander A, Minns RS, and Forbes R
- Abstract
The structural dynamics of photoexcited gas-phase carbon disulfide (CS
2 ) molecules are investigated using ultrafast electron diffraction. The dynamics were triggered by excitation of the optically bright1 B2 (1 Σu + ) state by an ultraviolet femtosecond laser pulse centred at 200 nm. In accordance with previous studies, rapid vibrational motion facilitates a combination of internal conversion and intersystem crossing to lower-lying electronic states. Photodissociation via these electronic manifolds results in the production of CS fragments in the electronic ground state and dissociated singlet and triplet sulphur atoms. The structural dynamics are extracted from the experiment using a trajectory-fitting filtering approach, revealing the main characteristics of the singlet and triplet dissociation pathways. Finally, the effect of the time-resolution on the experimental signal is considered and an outlook to future experiments provided.- Published
- 2022
- Full Text
- View/download PDF
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