158 results on '"Alberich-Bayarri A"'
Search Results
2. METhodological RadiomICs Score (METRICS): a quality scoring tool for radiomics research endorsed by EuSoMII
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Kocak, Burak, Akinci D’Antonoli, Tugba, Mercaldo, Nathaniel, Alberich-Bayarri, Angel, Baessler, Bettina, Ambrosini, Ilaria, Andreychenko, Anna E., Bakas, Spyridon, Beets-Tan, Regina G. H., Bressem, Keno, Buvat, Irene, Cannella, Roberto, Cappellini, Luca Alessandro, Cavallo, Armando Ugo, Chepelev, Leonid L., Chu, Linda Chi Hang, Demircioglu, Aydin, deSouza, Nandita M., Dietzel, Matthias, Fanni, Salvatore Claudio, Fedorov, Andrey, Fournier, Laure S., Giannini, Valentina, Girometti, Rossano, Groot Lipman, Kevin B. W., Kalarakis, Georgios, Kelly, Brendan S., Klontzas, Michail E., Koh, Dow-Mu, Kotter, Elmar, Lee, Ho Yun, Maas, Mario, Marti-Bonmati, Luis, Müller, Henning, Obuchowski, Nancy, Orlhac, Fanny, Papanikolaou, Nikolaos, Petrash, Ekaterina, Pfaehler, Elisabeth, Pinto dos Santos, Daniel, Ponsiglione, Andrea, Sabater, Sebastià, Sardanelli, Francesco, Seeböck, Philipp, Sijtsema, Nanna M., Stanzione, Arnaldo, Traverso, Alberto, Ugga, Lorenzo, Vallières, Martin, van Dijk, Lisanne V., van Griethuysen, Joost J. M., van Hamersvelt, Robbert W., van Ooijen, Peter, Vernuccio, Federica, Wang, Alan, Williams, Stuart, Witowski, Jan, Zhang, Zhongyi, Zwanenburg, Alex, and Cuocolo, Renato
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- 2024
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3. Predicting survival, neurotoxicity and response in B-cell lymphoma patients treated with CAR-T therapy using an imaging features-based model
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Blanca Ferrer-Lores, Alfonso Ortiz-Algarra, Alfonso Picó-Peris, Alejandra Estepa-Fernández, Fuensanta Bellvís-Bataller, Glen J. Weiss, Almudena Fuster-Matanzo, Juan Pedro Fernández, Ana Jimenez-Pastor, Rafael Hernani, Ana Saus-Carreres, Ana Benzaquen, Laura Ventura, José Luis Piñana, Ana Belén Teruel, Alicia Serrano-Alcalá, Rosa Dosdá, Pablo Sopena-Novales, Aitana Balaguer-Rosello, Manuel Guerreiro, Jaime Sanz, Luis Martí-Bonmatí, María José Terol, and Ángel Alberich-Bayarri
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CAR-T cells therapy ,Non-Hodgkin lymphoma ,Radiomics ,Survival prediction ,ICANS prediction ,Treatment response prediction ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background This multicentre retrospective observational study aims to develop imaging-based prognostic and predictive models for relapsed/refractory (R/R) B-cell lymphoma patients undergoing CAR-T therapy by integrating clinical data and imaging features. Specifically, our aim was to predict 3- and 6-month treatment response, overall survival (OS), progression-free survival (PFS), and the occurrence of the immune effector cell-associated neurotoxicity syndrome (ICANS). Results Sixty-five patients of R/R B-cell lymphoma treated with CAR-T cells in two centres were included. Pre-infusion [18F]FDG PET/CT scans and clinical data were systematically collected, and imaging features, including kurtosis, entropy, maximum diameter, standardized uptake value (SUV) related features (SUVmax, SUVmean, SUVstd, SUVmedian, SUVp25, SUVp75), total metabolic tumour volume (MTVtotal), and total lesion glycolysis (TLGtotal), were extracted using the Quibim platform. The median age was 62 (range 21–76) years and the median follow-up for survivors was 10.47 (range 0.20–45.80) months. A logistic regression model accurately predicted neurotoxicity (AUC: 0.830), and Cox proportional-hazards models for CAR-T response at 3 and 6 months demonstrated high accuracy (AUC: 0.754 and 0.818, respectively). Median predicted OS after CAR-T therapy was 4.73 months for high MTVtotal and 37.55 months for low MTVtotal. Median predicted PFS was 2.73 months for high MTVtotal and 11.83 months for low MTVtotal. For all outcomes, predictive models, combining imaging features and clinical variables, showed improved accuracy compared to models using only clinical variables or imaging features alone. Conclusion This study successfully integrates imaging features and clinical variables to predict outcomes in R/R B-cell lymphoma patients undergoing CAR-T. Notably, the identified MTVtotal cut-off effectively stratifies patients, as evidenced by significant differences in OS and PFS. Additionally, the predictive models for neurotoxicity and CAR-T response show promising accuracy. This comprehensive approach holds promise for risk stratification and personalized treatment strategies which may become a helpful tool for optimizing CAR-T outcomes in R/R lymphoma patients.
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- 2024
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4. METhodological RadiomICs Score (METRICS): a quality scoring tool for radiomics research endorsed by EuSoMII
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Burak Kocak, Tugba Akinci D’Antonoli, Nathaniel Mercaldo, Angel Alberich-Bayarri, Bettina Baessler, Ilaria Ambrosini, Anna E. Andreychenko, Spyridon Bakas, Regina G. H. Beets-Tan, Keno Bressem, Irene Buvat, Roberto Cannella, Luca Alessandro Cappellini, Armando Ugo Cavallo, Leonid L. Chepelev, Linda Chi Hang Chu, Aydin Demircioglu, Nandita M. deSouza, Matthias Dietzel, Salvatore Claudio Fanni, Andrey Fedorov, Laure S. Fournier, Valentina Giannini, Rossano Girometti, Kevin B. W. Groot Lipman, Georgios Kalarakis, Brendan S. Kelly, Michail E. Klontzas, Dow-Mu Koh, Elmar Kotter, Ho Yun Lee, Mario Maas, Luis Marti-Bonmati, Henning Müller, Nancy Obuchowski, Fanny Orlhac, Nikolaos Papanikolaou, Ekaterina Petrash, Elisabeth Pfaehler, Daniel Pinto dos Santos, Andrea Ponsiglione, Sebastià Sabater, Francesco Sardanelli, Philipp Seeböck, Nanna M. Sijtsema, Arnaldo Stanzione, Alberto Traverso, Lorenzo Ugga, Martin Vallières, Lisanne V. van Dijk, Joost J. M. van Griethuysen, Robbert W. van Hamersvelt, Peter van Ooijen, Federica Vernuccio, Alan Wang, Stuart Williams, Jan Witowski, Zhongyi Zhang, Alex Zwanenburg, and Renato Cuocolo
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Radiomics ,Deep learning ,Artificial intelligence ,Machine learning ,Guideline ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Purpose To propose a new quality scoring tool, METhodological RadiomICs Score (METRICS), to assess and improve research quality of radiomics studies. Methods We conducted an online modified Delphi study with a group of international experts. It was performed in three consecutive stages: Stage#1, item preparation; Stage#2, panel discussion among EuSoMII Auditing Group members to identify the items to be voted; and Stage#3, four rounds of the modified Delphi exercise by panelists to determine the items eligible for the METRICS and their weights. The consensus threshold was 75%. Based on the median ranks derived from expert panel opinion and their rank-sum based conversion to importance scores, the category and item weights were calculated. Result In total, 59 panelists from 19 countries participated in selection and ranking of the items and categories. Final METRICS tool included 30 items within 9 categories. According to their weights, the categories were in descending order of importance: study design, imaging data, image processing and feature extraction, metrics and comparison, testing, feature processing, preparation for modeling, segmentation, and open science. A web application and a repository were developed to streamline the calculation of the METRICS score and to collect feedback from the radiomics community. Conclusion In this work, we developed a scoring tool for assessing the methodological quality of the radiomics research, with a large international panel and a modified Delphi protocol. With its conditional format to cover methodological variations, it provides a well-constructed framework for the key methodological concepts to assess the quality of radiomic research papers. Critical relevance statement A quality assessment tool, METhodological RadiomICs Score (METRICS), is made available by a large group of international domain experts, with transparent methodology, aiming at evaluating and improving research quality in radiomics and machine learning. Key points • A methodological scoring tool, METRICS, was developed for assessing the quality of radiomics research, with a large international expert panel and a modified Delphi protocol. • The proposed scoring tool presents expert opinion-based importance weights of categories and items with a transparent methodology for the first time. • METRICS accounts for varying use cases, from handcrafted radiomics to entirely deep learning-based pipelines. • A web application has been developed to help with the calculation of the METRICS score ( https://metricsscore.github.io/metrics/METRICS.html ) and a repository created to collect feedback from the radiomics community ( https://github.com/metricsscore/metrics ). Graphical Abstract
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- 2024
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5. Data Harmonisation for Information Fusion in Digital Healthcare: A State-of-the-Art Systematic Review, Meta-Analysis and Future Research Directions
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Nan, Yang, Del Ser, Javier, Walsh, Simon, Schönlieb, Carola, Roberts, Michael, Selby, Ian, Howard, Kit, Owen, John, Neville, Jon, Guiot, Julien, Ernst, Benoit, Pastor, Ana, Alberich-Bayarri, Angel, Menzel, Marion I., Walsh, Sean, Vos, Wim, Flerin, Nina, Charbonnier, Jean-Paul, van Rikxoort, Eva, Chatterjee, Avishek, Woodruff, Henry, Lambin, Philippe, Cerdá-Alberich, Leonor, Martí-Bonmatí, Luis, Herrera, Francisco, and Yang, Guang
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Computer Science - Artificial Intelligence ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Removing the bias and variance of multicentre data has always been a challenge in large scale digital healthcare studies, which requires the ability to integrate clinical features extracted from data acquired by different scanners and protocols to improve stability and robustness. Previous studies have described various computational approaches to fuse single modality multicentre datasets. However, these surveys rarely focused on evaluation metrics and lacked a checklist for computational data harmonisation studies. In this systematic review, we summarise the computational data harmonisation approaches for multi-modality data in the digital healthcare field, including harmonisation strategies and evaluation metrics based on different theories. In addition, a comprehensive checklist that summarises common practices for data harmonisation studies is proposed to guide researchers to report their research findings more effectively. Last but not least, flowcharts presenting possible ways for methodology and metric selection are proposed and the limitations of different methods have been surveyed for future research., Comment: 54 pages, 14 figures, accepted by the Information Fusion journal
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- 2022
6. Brain network functional connectivity changes in patients with anterior knee pain: a resting-state fMRI exploratory study
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Vicente Sanchis-Alfonso, María Beser-Robles, Amadeo Ten-Esteve, Cristina Ramírez-Fuentes, Ángel Alberich-Bayarri, Raúl Espert, Luis García-Larrea, and Luis Martí-Bonmatí
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Chronic pain ,Brain ,Catastrophization ,Knee joint ,Magnetic resonance imaging ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background This study investigates the functional brain connectivity in patients with anterior knee pain (AKP). While biomechanical models are frequently employed to investigate AKP, it is important to recognize that pain can manifest even in the absence of structural abnormalities. Leveraging the capabilities of functional magnetic resonance imaging (fMRI), this research aims to investigate the brain mechanisms present in AKP patients. Methods Forty-five female subjects (24 AKP patients, 21 controls) underwent resting-state fMRI and T1-weighted structural MRI. Functional brain connectivity patterns were analyzed, focusing on pain network areas, and the influence of catastrophizing thoughts was evaluated. Results Comparing patients and controls, several findings emerged. First, patients with AKP exhibited increased correlation between the right supplementary motor area and cerebellum I, as well as decreased correlation between the right insula and the left rostral prefrontal cortex and superior frontal gyrus. Second, in AKP patients with catastrophizing thoughts, there was increased correlation of the left lateral parietal cortex with two regions of the right cerebellum (II and VII) and the right pallidum, and decreased correlation between the left medial frontal gyrus and the right thalamus. Furthermore, the correlation between these regions showed promising results for discriminating AKP patients from controls, achieving a cross-validation accuracy of 80.5%. Conclusions Resting-state fMRI revealed correlation differences in AKP patients compared to controls and based on catastrophizing thoughts levels. These findings shed light on neural correlates of chronic pain in AKP, suggesting that functional brain connectivity alterations may be linked to pain experience in this population. Relevance statement Etiopathogenesis of pain in anterior knee pain patients might not be limited to the knee, but also to underlying alterations in the central nervous system: cortical changes might lead a perpetuation of pain. Key points • Anterior knee pain patients exhibit distinct functional brain connectivity compared to controls, and among catastrophizing subgroups. • Resting-state fMRI reveals potential for discriminating anterior knee pain patients with 80.5% accuracy. • Functional brain connectivity differences improve understanding of pain pathogenesis and objective anterior knee pain identification. Graphical Abstract
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- 2023
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7. Automated prostate multi-regional segmentation in magnetic resonance using fully convolutional neural networks
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Jimenez-Pastor, Ana, Lopez-Gonzalez, Rafael, Fos-Guarinos, Belén, Garcia-Castro, Fabio, Wittenberg, Mark, Torregrosa-Andrés, Asunción, Marti-Bonmati, Luis, Garcia-Fontes, Margarita, Duarte, Pablo, Gambini, Juan Pablo, Bittencourt, Leonardo Kayat, Kitamura, Felipe Campos, Venugopal, Vasantha Kumar, Mahajan, Vidur, Ros, Pablo, Soria-Olivas, Emilio, and Alberich-Bayarri, Angel
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- 2023
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8. Design and validation of a decision support checklist for efficient resource allocation in research projects during proposal preparation
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Penadés-Blasco, Ana, Cerdá-Alberich, Leonor, Sierra, José Miguel Carot, Alberich-Bayarri, Angel, Martínez, Ainhoa Genovés, Añó, Rita Diranzo, Parrilla, Cristina Clemente, Llobera, Juan Maria Soriano, Consuelo, David Vivas, and Martí-Bonmatí, Luis
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- 2024
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9. Imaging Biomarkers in Oncology
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Martí-Bonmatí, Luis, Alberich-Bayarri, Ángel, Alberich, Leonor Cerdá, Jiménez, Ana, Neri, Emanuele, editor, and Erba, Paola Anna, editor
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- 2023
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10. Brain network functional connectivity changes in patients with anterior knee pain: a resting-state fMRI exploratory study
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Sanchis-Alfonso, Vicente, Beser-Robles, María, Ten-Esteve, Amadeo, Ramírez-Fuentes, Cristina, Alberich-Bayarri, Ángel, Espert, Raúl, García-Larrea, Luis, and Martí-Bonmatí, Luis
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- 2023
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11. MAIC–10 brief quality checklist for publications using artificial intelligence and medical images
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Cerdá-Alberich, Leonor, Solana, Jimena, Mallol, Pedro, Ribas, Gloria, García-Junco, Miguel, Alberich-Bayarri, Angel, and Marti-Bonmati, Luis
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- 2023
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12. MAIC–10 brief quality checklist for publications using artificial intelligence and medical images
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Leonor Cerdá-Alberich, Jimena Solana, Pedro Mallol, Gloria Ribas, Miguel García-Junco, Angel Alberich-Bayarri, and Luis Marti-Bonmati
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Artificial intelligence ,Medical imaging ,Checklist ,Software as a medical device ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Key points AI solutions have become an essential clinical tool in medical imaging. Standardised criteria are necessary to ensure quality of AI studies. Established criteria are often incomplete, too exhaustive, or not broadly applicable. A concise and reproducible quantitative checklist will help to ensure a minimum of acceptance.
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- 2023
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13. Automated Cervical Spinal Cord Segmentation in Real-World MRI of Multiple Sclerosis Patients by Optimized Hybrid Residual Attention-Aware Convolutional Neural Networks
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Bueno, América, Bosch, Ignacio, Rodríguez, Alejandro, Jiménez, Ana, Carreres, Joan, Fernández, Matías, Marti-Bonmati, Luis, and Alberich-Bayarri, Angel
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- 2022
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14. Imaging Biomarkers and Their Meaning for Molecular Imaging
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Alberich-Bayarri, Angel, Jiménez-Pastor, Ana, Mayorga-Ruiz, Irene, Veit-Haibach, Patrick, editor, and Herrmann, Ken, editor
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- 2022
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15. Imaging Biobanks for Molecular Imaging: How to Integrate ML/AI into Our Databases
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Alberich-Bayarri, Angel, Jiménez-Pastor, Ana, Ferrer, Blanca, Terol, María José, Mayorga-Ruiz, Irene, Veit-Haibach, Patrick, editor, and Herrmann, Ken, editor
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- 2022
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16. Structured Reporting and Artificial Intelligence
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Fanni, Salvatore Claudio, Gabelloni, Michela, Alberich-Bayarri, Angel, Neri, Emanuele, van Ooijen, Peter M. A., Series Editor, Ranschaert, Erik R., Series Editor, Trianni, Annalisa, Series Editor, Fatehi, Mansoor, editor, and Pinto dos Santos, Daniel, editor
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- 2022
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17. Standardised lesion segmentation for imaging biomarker quantitation: a consensus recommendation from ESR and EORTC
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Nandita M. deSouza, Aad van der Lugt, Christophe M. Deroose, Angel Alberich-Bayarri, Luc Bidaut, Laure Fournier, Lena Costaridou, Daniela E. Oprea-Lager, Elmar Kotter, Marion Smits, Marius E. Mayerhoefer, Ronald Boellaard, Anna Caroli, Lioe-Fee de Geus-Oei, Wolfgang G. Kunz, Edwin H. Oei, Frederic Lecouvet, Manuela Franca, Christian Loewe, Egesta Lopci, Caroline Caramella, Anders Persson, Xavier Golay, Marc Dewey, James P. B. O’Connor, Pim deGraaf, Sergios Gatidis, Gudrun Zahlmann, European Society of Radiology, and European Organisation for Research and Treatment of Cancer
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Segmentation and standardisation ,mDelphi ,Region of interest ,Organ-specific ,Modality-specific ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background Lesion/tissue segmentation on digital medical images enables biomarker extraction, image-guided therapy delivery, treatment response measurement, and training/validation for developing artificial intelligence algorithms and workflows. To ensure data reproducibility, criteria for standardised segmentation are critical but currently unavailable. Methods A modified Delphi process initiated by the European Imaging Biomarker Alliance (EIBALL) of the European Society of Radiology (ESR) and the European Organisation for Research and Treatment of Cancer (EORTC) Imaging Group was undertaken. Three multidisciplinary task forces addressed modality and image acquisition, segmentation methodology itself, and standards and logistics. Devised survey questions were fed via a facilitator to expert participants. The 58 respondents to Round 1 were invited to participate in Rounds 2–4. Subsequent rounds were informed by responses of previous rounds. Results/conclusions Items with ≥ 75% consensus are considered a recommendation. These include system performance certification, thresholds for image signal-to-noise, contrast-to-noise and tumour-to-background ratios, spatial resolution, and artefact levels. Direct, iterative, and machine or deep learning reconstruction methods, use of a mixture of CE marked and verified research tools were agreed and use of specified reference standards and validation processes considered essential. Operator training and refreshment were considered mandatory for clinical trials and clinical research. Items with a 60–74% agreement require reporting (site-specific accreditation for clinical research, minimal pixel number within lesion segmented, use of post-reconstruction algorithms, operator training refreshment for clinical practice). Items with ≤ 60% agreement are outside current recommendations for segmentation (frequency of system performance tests, use of only CE-marked tools, board certification of operators, frequency of operator refresher training). Recommendations by anatomical area are also specified.
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- 2022
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18. Pancreatic steatosis and iron overload increases cardiovascular risk in non-alcoholic fatty liver disease
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David Marti-Aguado, Amadeo Ten-Esteve, Carlos Manuel Baracaldo-Silva, Ana Crespo, Elena Coello, Víctor Merino-Murgui, Matias Fernandez-Paton, Clara Alfaro-Cervello, Alba Sánchez-Martín, Mónica Bauza, Ana Jimenez-Pastor, Alexandre Perez-Girbes, Salvador Benlloch, Judith Pérez-Rojas, Víctor Puglia, Antonio Ferrández, Victoria Aguilera, Mercedes Latorre, Cristina Monton, Desamparados Escudero-García, Ignacio Bosch-Roig, Ángel Alberich-Bayarri, and Luis Marti-Bonmati
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non-alcoholic fatty liver disease (NAFLD) ,magnetic resonance imaging (MRI) ,proton density fat fraction (PDFF) ,pancreatic steatosis ,iron overload ,cardiovascular risk ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
ObjectiveTo assess the prevalence of pancreatic steatosis and iron overload in non-alcoholic fatty liver disease (NAFLD) and their correlation with liver histology severity and the risk of cardiometabolic diseases.MethodA prospective, multicenter study including NAFLD patients with biopsy and paired Magnetic Resonance Imaging (MRI) was performed. Liver biopsies were evaluated according to NASH Clinical Research Network, hepatic iron storages were scored, and digital pathology quantified the tissue proportionate areas of fat and iron. MRI-biomarkers of fat fraction (PDFF) and iron accumulation (R2*) were obtained from the liver and pancreas. Different metabolic traits were evaluated, cardiovascular disease (CVD) risk was estimated with the atherosclerotic CVD score, and the severity of iron metabolism alteration was determined by grading metabolic hiperferritinemia (MHF). Associations between CVD, histology and MRI were investigated.ResultsIn total, 324 patients were included. MRI-determined pancreatic iron overload and moderate-to severe steatosis were present in 45% and 25%, respectively. Liver and pancreatic MRI-biomarkers showed a weak correlation (r=0.32 for PDFF, r=0.17 for R2*). Pancreatic PDFF increased with hepatic histologic steatosis grades and NASH diagnosis (p
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- 2023
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19. Radiological Structured Report Integrated with Quantitative Imaging Biomarkers and Qualitative Scoring Systems
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Mañas-García, A., González-Valverde, I., Camacho-Ramos, E., Alberich-Bayarri, A., Maldonado, J. A., Marcos, M., and Robles, M.
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- 2022
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20. Data harmonisation for information fusion in digital healthcare: A state-of-the-art systematic review, meta-analysis and future research directions.
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Yang Nan 0002, Javier Del Ser, Simon Walsh, Carola Schönlieb, Michael Roberts, Ian Selby, Kit Howard, John Owen, Jon Neville, Julien Guiot, Benoit Ernst, Ana Pastor, Angel Alberich-Bayarri, Marion I. Menzel, Sean Walsh 0004, Wim Vos, Nina Flerin, Jean-Paul Charbonnier, Eva M. van Rikxoort, Avishek Chatterjee, Henry C. Woodruff, Philippe Lambin, Leonor Cerdá Alberich, Luis Martí-Bonmatí, Francisco Herrera, and Guang Yang 0006
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- 2022
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21. Automated Cervical Spinal Cord Segmentation in Real-World MRI of Multiple Sclerosis Patients by Optimized Hybrid Residual Attention-Aware Convolutional Neural Networks.
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América Bueno, Ignacio Bosch, Alejandro Rodríguez 0004, Ana Jiménez, Joan Carreres, Matías Fernández, Luis Martí-Bonmatí, and Angel Alberich-Bayarri
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- 2022
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22. Radiological Structured Report Integrated with Quantitative Imaging Biomarkers and Qualitative Scoring Systems.
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Alejandro Mañas-García, Ismael González-Valverde, E. Camacho-Ramos, Angel Alberich-Bayarri, José Alberto Maldonado, Mar Marcos, and Montserrat Robles
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- 2022
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23. El informe radiológico. Estructura, estilo y contenido
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Martí-Bonmatí, L., Alberich-Bayarri, Á., and Torregrosa, A.
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- 2022
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24. A deep learning-based application for COVID-19 diagnosis on CT: The Imaging COVID-19 AI initiative.
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Laurens Topff, José Sánchez-García, Rafael López-González, Ana Jiménez Pastor, Jacob J Visser, Merel Huisman, Julien Guiot, Regina G H Beets-Tan, Angel Alberich-Bayarri, Almudena Fuster-Matanzo, Erik R Ranschaert, and Imaging COVID-19 AI initiative
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Medicine ,Science - Abstract
BackgroundRecently, artificial intelligence (AI)-based applications for chest imaging have emerged as potential tools to assist clinicians in the diagnosis and management of patients with coronavirus disease 2019 (COVID-19).ObjectivesTo develop a deep learning-based clinical decision support system for automatic diagnosis of COVID-19 on chest CT scans. Secondarily, to develop a complementary segmentation tool to assess the extent of lung involvement and measure disease severity.MethodsThe Imaging COVID-19 AI initiative was formed to conduct a retrospective multicentre cohort study including 20 institutions from seven different European countries. Patients with suspected or known COVID-19 who underwent a chest CT were included. The dataset was split on the institution-level to allow external evaluation. Data annotation was performed by 34 radiologists/radiology residents and included quality control measures. A multi-class classification model was created using a custom 3D convolutional neural network. For the segmentation task, a UNET-like architecture with a backbone Residual Network (ResNet-34) was selected.ResultsA total of 2,802 CT scans were included (2,667 unique patients, mean [standard deviation] age = 64.6 [16.2] years, male/female ratio 1.3:1). The distribution of classes (COVID-19/Other type of pulmonary infection/No imaging signs of infection) was 1,490 (53.2%), 402 (14.3%), and 910 (32.5%), respectively. On the external test dataset, the diagnostic multiclassification model yielded high micro-average and macro-average AUC values (0.93 and 0.91, respectively). The model provided the likelihood of COVID-19 vs other cases with a sensitivity of 87% and a specificity of 94%. The segmentation performance was moderate with Dice similarity coefficient (DSC) of 0.59. An imaging analysis pipeline was developed that returned a quantitative report to the user.ConclusionWe developed a deep learning-based clinical decision support system that could become an efficient concurrent reading tool to assist clinicians, utilising a newly created European dataset including more than 2,800 CT scans.
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- 2023
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25. Standardised lesion segmentation for imaging biomarker quantitation: a consensus recommendation from ESR and EORTC
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deSouza, Nandita M., van der Lugt, Aad, Deroose, Christophe M., Alberich-Bayarri, Angel, Bidaut, Luc, Fournier, Laure, Costaridou, Lena, Oprea-Lager, Daniela E., Kotter, Elmar, Smits, Marion, Mayerhoefer, Marius E., Boellaard, Ronald, Caroli, Anna, de Geus-Oei, Lioe-Fee, Kunz, Wolfgang G., Oei, Edwin H., Lecouvet, Frederic, Franca, Manuela, Loewe, Christian, Lopci, Egesta, Caramella, Caroline, Persson, Anders, Golay, Xavier, Dewey, Marc, O’Connor, James P. B., deGraaf, Pim, Gatidis, Sergios, and Zahlmann, Gudrun
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- 2022
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26. Reproducibility Analysis of Radiomic Features from T2-weighted MRI after Processing and Segmentation Alternations in Neuroblastoma Tumors
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Veiga-Canuto, Diana, primary, Fernández-Patón, Matías, additional, Cerdà Alberich, Leonor, additional, Jiménez Pastor, Ana, additional, Gomis Maya, Armando, additional, Carot Sierra, Jose Miguel, additional, Sangüesa Nebot, Cinta, additional, Martínez de las Heras, Blanca, additional, Pötschger, Ulrike, additional, Taschner-Mandl, Sabine, additional, Neri, Emanuele, additional, Cañete, Adela, additional, Ladenstein, Ruth, additional, Hero, Barbara, additional, Alberich-Bayarri, Ángel, additional, and Martí-Bonmatí, Luis, additional
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- 2024
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27. Quantification of H2 17O by 1H-MR imaging at 3 T: a feasibility study
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Luis Martí-Bonmatí, Alejandro Rodríguez-Ortega, Amadeo Ten-Esteve, Ángel Alberich-Bayarri, Bernardo Celda, and Eduardo Ferrer
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Brain ,Magnetic resonance imaging ,Oxygen-17 ,Phantoms (imaging) ,Rats ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background Indirect 1H-magnetic resonance (MR) imaging of 17O-labelled water allows imaging in vivo dynamic changes in water compartmentalisation. Our aim was to describe the feasibility of indirect 1H-MR methods to evaluate the effect of H2 17O on the MR relaxation rates by using conventional a 3-T equipment and voxel-wise relaxation rates. Methods MR images were used to calculate the R1, R2, and R2* relaxation rates in phantoms (19 vials with different H2 17O concentrations, ranging from 0.039 to 5.5%). Afterwards, an experimental animal pilot study (8 rats) was designed to evaluate the in vivo relative R2 brain dynamic changes related to the intravenous administration of 17O-labelled water in rats. Results There were no significant changes on the R1 and R2* values from phantoms. The R2 obtained with the turbo spin-echo T2-weighted sequence with 20-ms echo time interval had the higher statistical difference (0.67 s−1, interquartile range 0.34, p < 0.001) and Spearman correlation (rho 0.79). The R2 increase was adjusted to a linear fit between 0.25 and 5.5%, represented with equation R2 = 0.405 concentration + 0.3215. The highest significant differences were obtained for the higher concentrations (3.1–5.5%). The rat brain MR experiment showed a mean 10% change in the R2 value after the H2 17O injection with progressive normalisation. Conclusions Indirect 1H-MR imaging method is able to measure H2 17O concentration by using R2 values and conventional 3-T MR equipment. Normalised R2 relative dynamic changes after the intravenous injection of a H2 17O saline solution provide a unique opportunity to map water pathophysiology in vivo, opening the analysis of aquaporins status and modifications by disease at clinically available 3-T proton MR scanners.
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- 2021
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28. Structured Reporting and Artificial Intelligence
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Fanni, Salvatore Claudio, primary, Gabelloni, Michela, additional, Alberich-Bayarri, Angel, additional, and Neri, Emanuele, additional
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- 2022
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29. Development and validation of an image biomarker to identify metabolic dysfunction associated steatohepatitis: MR-MASH score
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Instituto de Salud Carlos III, Ministerio de Ciencia e Innovación (España), Universidad de Valencia, University of Pittsburgh, Generalitat Valenciana, https://ror.org/02gfc7t72, Martí-Aguado, David, Arnouk, Joud, Liang, Jia-Xu, Lara-Romero, Carmen, Behari, Jaideep, Furlan, Alessandro, Jiménez-Pastor, Ana, Ten-Esteve, Amadeo, Alfaro-Cervello, Clara, Bauza, Mónica, Gallen-Peris, Ana, Gimeno-Torres, Marta, Merino-Murgui, Víctor, Pérez-Girbes, Alexandre, Benlloch, Salvador, Pérez-Rojas, Judith, Puglia, Víctor, Ferrández-Izquierdo, Antonio, Aguilera, Victoria, Giesteira, Bruno, França, Manuela, Monton, Cristina, Escudero, Desamparados, Alberich-Bayarri, Ángel, Serra, Miguel Ángel, Bataller, Ramon, Romero-Gómez, Manuel, Marti-Bonmati, Luis, Instituto de Salud Carlos III, Ministerio de Ciencia e Innovación (España), Universidad de Valencia, University of Pittsburgh, Generalitat Valenciana, https://ror.org/02gfc7t72, Martí-Aguado, David, Arnouk, Joud, Liang, Jia-Xu, Lara-Romero, Carmen, Behari, Jaideep, Furlan, Alessandro, Jiménez-Pastor, Ana, Ten-Esteve, Amadeo, Alfaro-Cervello, Clara, Bauza, Mónica, Gallen-Peris, Ana, Gimeno-Torres, Marta, Merino-Murgui, Víctor, Pérez-Girbes, Alexandre, Benlloch, Salvador, Pérez-Rojas, Judith, Puglia, Víctor, Ferrández-Izquierdo, Antonio, Aguilera, Victoria, Giesteira, Bruno, França, Manuela, Monton, Cristina, Escudero, Desamparados, Alberich-Bayarri, Ángel, Serra, Miguel Ángel, Bataller, Ramon, Romero-Gómez, Manuel, and Marti-Bonmati, Luis
- Abstract
[Background and Aims] Diagnosis of metabolic dysfunction-associated steatohepatitis (MASH) requires histology. In this study, a magnetic resonance imaging (MRI) score was developed and validated to identify MASH in patients with metabolic dysfunction-associated steatotic liver disease (MASLD). Secondarily, a screening strategy for MASH diagnosis was investigated., [Methods] This prospective multicentre study included 317 patients with biopsy-proven MASLD and contemporaneous MRI. The discovery cohort (Spain, Portugal) included 194 patients. NAFLD activity score (NAS) and fibrosis were assessed with the NASH-CRN histologic system. MASH was defined by the presence of steatosis, lobular inflammation, and ballooning, with NAS ≥4 with or without fibrosis. An MRI-based composite biomarker of Proton Density Fat Fraction and waist circumference (MR–MASH score) was developed. Findings were afterwards validated in an independent cohort (United States, Spain) with different MRI protocols., [Results] In the derivation cohort, 51% (n = 99) had MASH. The MR–MASH score identified MASH with an AUC = .88 (95% CI .83–.93) and strongly correlated with NAS (r = .69). The MRI score lower cut-off corresponded to 88% sensitivity with 86% NPV, while the upper cut-off corresponded to 92% specificity with 87% PPV. MR–MASH was validated with an AUC = .86 (95% CI .77–.92), 91% sensitivity (lower cut-off) and 87% specificity (upper cut-off). A two-step screening strategy with sequential MR–MASH examination performed in patients with indeterminate-high FIB-4 or transient elastography showed an 83–84% PPV to identify MASH. The AUC of MR–MASH was significantly higher than that of the FAST score (p < .001)., [Conclusions] The MR–MASH score has clinical utility in the identification and management of patients with MASH at risk of progression.
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- 2024
30. Theranostic Contribution of Extracellular Matrix Metalloprotease Inducer-Paramagnetic Nanoparticles Against Acute Myocardial Infarction in a Pig Model of Coronary Ischemia-Reperfusion
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Ramirez-Carracedo, Rafael, Sanmartin, Marcelo, Ten, Amadeo, Hernandez, Ignacio, Tesoro, Laura, Diez-Mata, Javier, Botana, Laura, Ovejero-Paredes, Karina, Filice, Marco, Alberich-Bayarri, Angel, Martí-Bonmatí, Luis, Largo-Aramburu, Carlota, Saura, Marta, Zamorano, Jose Luis, and Zaragoza, Carlos
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- 2022
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31. Evaluation of patellar contact pressure changes after static versus dynamic medial patellofemoral ligament reconstructions using a finite element model
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Sanchís-Alfonso, Vicente, primary, Ginovart, Gerard, additional, Alastruey-López, Diego, additional, Montesinos-Berry, Erik, additional, Monllau, Joan Carles, additional, Alberich-Bayarri, Angel, additional, and Pérez, María Ángeles, additional
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- 2024
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32. CHAIMELEON Project: Creation of a Pan-European Repository of Health Imaging Data for the Development of AI-Powered Cancer Management Tools
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Luis Martí Bonmatí, Ana Miguel, Amelia Suárez, Mario Aznar, Jean Paul Beregi, Laure Fournier, Emanuele Neri, Andrea Laghi, Manuela França, Francesco Sardanelli, Tobias Penzkofer, Phillipe Lambin, Ignacio Blanquer, Marion I. Menzel, Karine Seymour, Sergio Figueiras, Katharina Krischak, Ricard Martínez, Yisroel Mirsky, Guang Yang, and Ángel Alberich-Bayarri
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radiology ,artificial intelligence-AI ,cancer imaging ,cancer management ,quantitative imaging biomarkers ,image harmonization ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The CHAIMELEON project aims to set up a pan-European repository of health imaging data, tools and methodologies, with the ambition to set a standard and provide resources for future AI experimentation for cancer management. The project is a 4 year long, EU-funded project tackling some of the most ambitious research in the fields of biomedical imaging, artificial intelligence and cancer treatment, addressing the four types of cancer that currently have the highest prevalence worldwide: lung, breast, prostate and colorectal. To allow this, clinical partners and external collaborators will populate the repository with multimodality (MR, CT, PET/CT) imaging and related clinical data. Subsequently, AI developers will enable a multimodal analytical data engine facilitating the interpretation, extraction and exploitation of the information stored at the repository. The development and implementation of AI-powered pipelines will enable advancement towards automating data deidentification, curation, annotation, integrity securing and image harmonization. By the end of the project, the usability and performance of the repository as a tool fostering AI experimentation will be technically validated, including a validation subphase by world-class European AI developers, participating in Open Challenges to the AI Community. Upon successful validation of the repository, a set of selected AI tools will undergo early in-silico validation in observational clinical studies coordinated by leading experts in the partner hospitals. Tool performance will be assessed, including external independent validation on hallmark clinical decisions in response to some of the currently most important clinical end points in cancer. The project brings together a consortium of 18 European partners including hospitals, universities, R&D centers and private research companies, constituting an ecosystem of infrastructures, biobanks, AI/in-silico experimentation and cloud computing technologies in oncology.
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- 2022
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33. Quantification of H217O by 1H-MR imaging at 3 T: a feasibility study
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Martí-Bonmatí, Luis, Rodríguez-Ortega, Alejandro, Ten-Esteve, Amadeo, Alberich-Bayarri, Ángel, Celda, Bernardo, and Ferrer, Eduardo
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- 2021
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34. Development and validation of an image biomarker to identify metabolic dysfunction associated steatohepatitis: MR–MASH score
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Marti‐Aguado, David, primary, Arnouk, Joud, additional, Liang, Jia‐Xu, additional, Lara‐Romero, Carmen, additional, Behari, Jaideep, additional, Furlan, Alessandro, additional, Jimenez‐Pastor, Ana, additional, Ten‐Esteve, Amadeo, additional, Alfaro‐Cervello, Clara, additional, Bauza, Mónica, additional, Gallen‐Peris, Ana, additional, Gimeno‐Torres, Marta, additional, Merino‐Murgui, Víctor, additional, Perez‐Girbes, Alexandre, additional, Benlloch, Salvador, additional, Pérez‐Rojas, Judith, additional, Puglia, Víctor, additional, Ferrández‐Izquierdo, Antonio, additional, Aguilera, Victoria, additional, Giesteira, Bruno, additional, França, Manuela, additional, Monton, Cristina, additional, Escudero‐García, Desamparados, additional, Alberich‐Bayarri, Ángel, additional, Serra, Miguel A., additional, Bataller, Ramon, additional, Romero‐Gomez, Manuel, additional, and Marti‐Bonmati, Luis, additional
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- 2023
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35. Correlation of Pre- and Post-radio-chemotherapy MRI Texture Features With Tumor Response in Rectal Cancer
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FABIOLA PAIAR, MICHELA GABELLONI, FRANCESCO PASQUALETTI, PAOLA COCUZZA, SABRINA MONTRONE, CHIARA ARENA, LORENZO FAGGIONI, ZENO FALASCHI, LORENZO DEL SECCO, ANGEL ALBERICH-BAYARRI, LUIS MARTI BONMATI, and EMANUELE NERI
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Cancer Research ,Oncology ,General Medicine - Published
- 2023
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36. Pancreatic steatosis and iron overload increases cardiovascular risk in non-alcoholic fatty liver disease
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Marti-Aguado, David, primary, Ten-Esteve, Amadeo, additional, Baracaldo-Silva, Carlos Manuel, additional, Crespo, Ana, additional, Coello, Elena, additional, Merino-Murgui, Víctor, additional, Fernandez-Paton, Matias, additional, Alfaro-Cervello, Clara, additional, Sánchez-Martín, Alba, additional, Bauza, Mónica, additional, Jimenez-Pastor, Ana, additional, Perez-Girbes, Alexandre, additional, Benlloch, Salvador, additional, Pérez-Rojas, Judith, additional, Puglia, Víctor, additional, Ferrández, Antonio, additional, Aguilera, Victoria, additional, Latorre, Mercedes, additional, Monton, Cristina, additional, Escudero-García, Desamparados, additional, Bosch-Roig, Ignacio, additional, Alberich-Bayarri, Ángel, additional, and Marti-Bonmati, Luis, additional
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- 2023
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37. Digital Pathology Enables Automated and Quantitative Assessment of Inflammatory Activity in Patients with Chronic Liver Disease
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David Marti-Aguado, Matías Fernández-Patón, Clara Alfaro-Cervello, Claudia Mestre-Alagarda, Mónica Bauza, Ana Gallen-Peris, Víctor Merino, Salvador Benlloch, Judith Pérez-Rojas, Antonio Ferrández, Víctor Puglia, Marta Gimeno-Torres, Victoria Aguilera, Cristina Monton, Desamparados Escudero-García, Ángel Alberich-Bayarri, Miguel A. Serra, and Luis Marti-Bonmati
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digital pathology ,inflammation ,nonalcoholic fatty liver disease ,chronic hepatitis ,Microbiology ,QR1-502 - Abstract
Traditional histological evaluation for grading liver disease severity is based on subjective and semi-quantitative scores. We examined the relationship between digital pathology analysis and corresponding scoring systems for the assessment of hepatic necroinflammatory activity. A prospective, multicenter study including 156 patients with chronic liver disease (74% nonalcoholic fatty liver disease-NAFLD, 26% chronic hepatitis-CH etiologies) was performed. Inflammation was graded according to the Nonalcoholic Steatohepatitis (NASH) Clinical Research Network system and METAVIR score. Whole-slide digital image analysis based on quantitative (I-score: inflammation ratio) and morphometric (C-score: proportionate area of staining intensities clusters) measurements were independently performed. Our data show that I-scores and C-scores increase with inflammation grades (p < 0.001). High correlation was seen for CH (ρ = 0.85–0.88), but only moderate for NAFLD (ρ = 0.5–0.53). I-score (p = 0.008) and C-score (p = 0.002) were higher for CH than NAFLD. Our MATLAB algorithm performed better than QuPath software for the diagnosis of low-moderate inflammation (p < 0.05). C-score AUC for classifying NASH was 0.75 (95%CI, 0.65–0.84) and for moderate/severe CH was 0.99 (95%CI, 0.97–1.00). Digital pathology measurements increased with fibrosis stages (p < 0.001). In conclusion, quantitative and morphometric metrics of inflammatory burden obtained by digital pathology correlate well with pathologists’ scores, showing a higher accuracy for the evaluation of CH than NAFLD.
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- 2021
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38. A deep learning-based application for COVID-19 diagnosis on CT:The Imaging COVID-19 AI initiative
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Topff, Laurens, Sánchez-García, José, López-González, Rafael, Pastor, Ana Jiménez, Visser, Jacob J., Huisman, Merel, Guiot, Julien, Beets-Tan, Regina G.H., Alberich-Bayarri, Angel, Fuster-Matanzo, Almudena, Ranschaert, Erik R., Topff, Laurens, Sánchez-García, José, López-González, Rafael, Pastor, Ana Jiménez, Visser, Jacob J., Huisman, Merel, Guiot, Julien, Beets-Tan, Regina G.H., Alberich-Bayarri, Angel, Fuster-Matanzo, Almudena, and Ranschaert, Erik R.
- Abstract
Background Recently, artificial intelligence (AI)-based applications for chest imaging have emerged as potential tools to assist clinicians in the diagnosis and management of patients with coronavirus disease 2019 (COVID-19). Objectives To develop a deep learning-based clinical decision support system for automatic diagnosis of COVID-19 on chest CT scans. Secondarily, to develop a complementary segmentation tool to assess the extent of lung involvement and measure disease severity. Methods The Imaging COVID-19 AI initiative was formed to conduct a retrospective multicentre cohort study including 20 institutions from seven different European countries. Patients with suspected or known COVID-19 who underwent a chest CT were included. The dataset was split on the institution-level to allow external evaluation. Data annotation was performed by 34 radiologists/radiology residents and included quality control measures. A multi-class classification model was created using a custom 3D convolutional neural network. For the segmentation task, a UNET-like architecture with a backbone Residual Network (ResNet-34) was selected. Results A total of 2, 802 CT scans were included (2, 667 unique patients, mean [standard deviation] age = 64.6 [16.2] years, male/female ratio 1.3:1). The distribution of classes (COVID-19/Other type of pulmonary infection/No imaging signs of infection) was 1, 490 (53.2%), 402 (14.3%), and 910 (32.5%), respectively. On the external test dataset, the diagnostic multiclassification model yielded high micro-average and macro-average AUC values (0.93 and 0.91, respectively). The model provided the likelihood of COVID-19 vs other cases with a sensitivity of 87% and a specificity of 94%. The segmentation performance was moderate with Dice similarity coefficient (DSC) of 0.59. An imaging analysis pipeline was developed that returned a quantitative report to the user. Conclusion We developed a deep learning-based clinical decision support system that could bec
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- 2023
39. A deep learning-based application for COVID-19 diagnosis on CT: The Imaging COVID-19 AI initiative
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Topff, Laurens, Sánchez-García, José, López-González, Rafael, Pastor, Ana Jiménez, Visser, Jacob J., Huisman, Merel, Guiot, Julien, Beets-Tan, Regina G.H., Alberich-Bayarri, Angel, Fuster-Matanzo, Almudena, Ranschaert, Erik R., and Radiology & Nuclear Medicine
- Abstract
Background Recently, artificial intelligence (AI)-based applications for chest imaging have emerged as potential tools to assist clinicians in the diagnosis and management of patients with coronavirus disease 2019 (COVID-19). Objectives To develop a deep learning-based clinical decision support system for automatic diagnosis of COVID-19 on chest CT scans. Secondarily, to develop a complementary segmentation tool to assess the extent of lung involvement and measure disease severity. Methods The Imaging COVID-19 AI initiative was formed to conduct a retrospective multicentre cohort study including 20 institutions from seven different European countries. Patients with suspected or known COVID-19 who underwent a chest CT were included. The dataset was split on the institution-level to allow external evaluation. Data annotation was performed by 34 radiologists/radiology residents and included quality control measures. A multi-class classification model was created using a custom 3D convolutional neural network. For the segmentation task, a UNET-like architecture with a backbone Residual Network (ResNet-34) was selected. Results A total of 2, 802 CT scans were included (2, 667 unique patients, mean [standard deviation] age = 64.6 [16.2] years, male/female ratio 1.3:1). The distribution of classes (COVID-19/Other type of pulmonary infection/No imaging signs of infection) was 1, 490 (53.2%), 402 (14.3%), and 910 (32.5%), respectively. On the external test dataset, the diagnostic multiclassification model yielded high micro-average and macro-average AUC values (0.93 and 0.91, respectively). The model provided the likelihood of COVID-19 vs other cases with a sensitivity of 87% and a specificity of 94%. The segmentation performance was moderate with Dice similarity coefficient (DSC) of 0.59. An imaging analysis pipeline was developed that returned a quantitative report to the user. Conclusion We developed a deep learning-based clinical decision support system that could become an efficient concurrent reading tool to assist clinicians, utilising a newly created European dataset including more than 2, 800 CT scans.
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- 2023
40. El informe radiológico. Estructura, estilo y contenido
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L. Martí-Bonmatí, Á. Alberich-Bayarri, and A. Torregrosa
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Radiology, Nuclear Medicine and imaging - Published
- 2022
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41. Independent Validation of a Deep Learning nnU-Net Tool for Neuroblastoma Detection and Segmentation in MR Images
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Veiga-Canuto, Diana, primary, Cerdà-Alberich, Leonor, additional, Jiménez-Pastor, Ana, additional, Carot Sierra, José Miguel, additional, Gomis-Maya, Armando, additional, Sangüesa-Nebot, Cinta, additional, Fernández-Patón, Matías, additional, Martínez de las Heras, Blanca, additional, Taschner-Mandl, Sabine, additional, Düster, Vanessa, additional, Pötschger, Ulrike, additional, Simon, Thorsten, additional, Neri, Emanuele, additional, Alberich-Bayarri, Ángel, additional, Cañete, Adela, additional, Hero, Barbara, additional, Ladenstein, Ruth, additional, and Martí-Bonmatí, Luis, additional
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- 2023
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42. Quantification of Liver Iron Overload with MRI: Review and Guidelines from the ESGAR and SAR
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Reeder, Scott B., primary, Yokoo, Takeshi, additional, França, Manuela, additional, Hernando, Diego, additional, Alberich-Bayarri, Ángel, additional, Alústiza, José María, additional, Gandon, Yves, additional, Henninger, Benjamin, additional, Hillenbrand, Claudia, additional, Jhaveri, Kartik, additional, Karçaaltıncaba, Musturay, additional, Kühn, Jens-Peter, additional, Mojtahed, Amirkasra, additional, Serai, Suraj D., additional, Ward, Richard, additional, Wood, John C., additional, Yamamura, Jin, additional, and Martí-Bonmatí, Luis, additional
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- 2023
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43. Correlation of Pre- and Post-radio-chemotherapy MRI Texture Features With Tumor Response in Rectal Cancer
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PAIAR, FABIOLA, primary, GABELLONI, MICHELA, additional, PASQUALETTI, FRANCESCO, additional, COCUZZA, PAOLA, additional, MONTRONE, SABRINA, additional, ARENA, CHIARA, additional, FAGGIONI, LORENZO, additional, FALASCHI, ZENO, additional, DEL SECCO, LORENZO, additional, ALBERICH-BAYARRI, ANGEL, additional, BONMATI, LUIS MARTI, additional, and NERI, EMANUELE, additional
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- 2023
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44. Radiological Structured Report Integrated with Quantitative Imaging Biomarkers and Qualitative Scoring Systems
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A. Mañas-García, I. González-Valverde, E. Camacho-Ramos, A. Alberich-Bayarri, J. A. Maldonado, M. Marcos, and M. Robles
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Male ,Radiological and Ultrasound Technology ,scoring systems ,Prostatic Neoplasms ,Magnetic Resonance Imaging ,Article ,Computer Science Applications ,Radiology Information Systems ,PACS integration ,Humans ,IHE MRRT profile ,Radiology, Nuclear Medicine and imaging ,structured reporting ,Radiology ,Biomarkers ,imaging biomarkers - Abstract
The benefits of structured reporting (SR) in radiology are well-known and have been widely described. However, there are limitations that must be overcome. Radiologists may be reluctant to change the conventional way of reporting. Error rates could potentially increase if SR is used improperly. Interruption of the visual search pattern by keeping the eyes focused on the report rather than the images may increase reporting time. Templates that include unnecessary or irrelevant information may undermine the consistency of the report. Last, the lack of support for multiple languages may hamper the adaptation of the report to the target audience. This work aims to mitigate these limitations with a web-based structured reporting system based on templates. By including field validators and logical rules, the system avoids reporting mistakes and allows to automatically calculate values and radiological qualitative scores. The system can manage quantitative information from imaging biomarkers, combining this with qualitative radiological information usually present in the structured report. It manages SR templates as plugins (IHE MRRT compliant and compatible with RSNA’s Radreport templates), ensures a seamless integration with PACS/RIS systems, and adapts the report to the target audience by means of natural language extracts generated in multiple languages. We describe a use case of SR template for prostate cancer including PI-RADS 2.1 scoring system and imaging biomarkers. For the time being, the system comprises 24 SR templates and provides service in 37 hospitals and healthcare institutions, endorsing the success of this contribution to mitigate some of the limitations of the SR.
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- 2022
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45. Automated Whole-Liver MRI Segmentation to Assess Steatosis and Iron Quantification in Chronic Liver Disease
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David Martí-Aguado, Ana Jiménez-Pastor, Ángel Alberich-Bayarri, Alejandro Rodríguez-Ortega, Clara Alfaro-Cervello, Claudia Mestre-Alagarda, Mónica Bauza, Ana Gallén-Peris, Elena Valero-Pérez, María Pilar Ballester, Marta Gimeno-Torres, Alexandre Pérez-Girbés, Salvador Benlloch, Judith Pérez-Rojas, Víctor Puglia, Antonio Ferrández, Victoria Aguilera, Desamparados Escudero-García, Miguel A. Serra, and Luis Martí-Bonmatí
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Male ,Cross-Sectional Studies ,Deep Learning ,Iron Overload ,Non-alcoholic Fatty Liver Disease ,Biopsy ,Chronic Disease ,Humans ,Female ,Radiology, Nuclear Medicine and imaging ,Prospective Studies ,Middle Aged ,Magnetic Resonance Imaging - Abstract
Background Standardized manual region of interest (ROI) sampling strategies for hepatic MRI steatosis and iron quantification are time consuming, with variable results. Purpose To evaluate the performance of automatic MRI whole-liver segmentation (WLS) for proton density fat fraction (PDFF) and iron estimation (transverse relaxometry [R2*]) versus manual ROI, with liver biopsy as the reference standard. Materials and Methods This prospective, cross-sectional, multicenter study recruited participants with chronic liver disease who underwent liver biopsy and chemical shift-encoded 3.0-T MRI between January 2017 and January 2021. Biopsy evaluation included histologic grading and digital pathology. MRI liver sampling strategies included manual ROI (two observers) and automatic whole-liver (deep learning algorithm) segmentation for PDFF- and R2*-derived measurements. Agreements between segmentation methods were measured using intraclass correlation coefficients (ICCs), and biases were evaluated using Bland-Altman analyses. Linear regression analyses were performed to determine the correlation between measurements and digital pathology. Results A total of 165 participants were included (mean age ± standard deviation, 55 years ± 12; 96 women; 101 of 165 participants [61%] with nonalcoholic fatty liver disease). Agreements between mean measurements were excellent, with ICCs of 0.98 for both PDFF and R2*. The median bias was 0.5% (interquartile range, -0.4% to 1.2%) for PDFF and 2.7 sec
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- 2022
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46. Independent Validation of a Deep Learning nnU-Net Tool for Neuroblastoma Detection and Segmentation in MR Images
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Diana Veiga-Canuto, Leonor Cerdà-Alberich, Ana Jiménez-Pastor, José Miguel Carot Sierra, Armando Gomis-Maya, Cinta Sangüesa-Nebot, Matías Fernández-Patón, Blanca Martínez de las Heras, Sabine Taschner-Mandl, Vanessa Düster, Ulrike Pötschger, Thorsten Simon, Emanuele Neri, Ángel Alberich-Bayarri, Adela Cañete, Barbara Hero, Ruth Ladenstein, and Luis Martí-Bonmatí
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Cancer Research ,Oncology ,tumor segmentation ,independent validation ,external validation ,neuroblastic tumors ,deep learning ,automatic segmentation - Abstract
Objectives. To externally validate and assess the accuracy of a previously trained fully automatic nnU-Net CNN algorithm to identify and segment primary neuroblastoma tumors in MR images in a large children cohort. Methods. An international multicenter, multivendor imaging repository of patients with neuroblastic tumors was used to validate the performance of a trained Machine Learning (ML) tool to identify and delineate primary neuroblastoma tumors. The dataset was heterogeneous and completely independent from the one used to train and tune the model, consisting of 300 children with neuroblastic tumors having 535 MR T2-weighted sequences (486 sequences at diagnosis and 49 after finalization of the first phase of chemotherapy). The automatic segmentation algorithm was based on a nnU-Net architecture developed within the PRIMAGE project. For comparison, the segmentation masks were manually edited by an expert radiologist, and the time for the manual editing was recorded. Different overlaps and spatial metrics were calculated to compare both masks. Results. The median Dice Similarity Coefficient (DSC) was high 0.997; 0.944–1.000 (median; Q1–Q3). In 18 MR sequences (6%), the net was not able neither to identify nor segment the tumor. No differences were found regarding the MR magnetic field, type of T2 sequence, or tumor location. No significant differences in the performance of the net were found in patients with an MR performed after chemotherapy. The time for visual inspection of the generated masks was 7.9 ± 7.5 (mean ± Standard Deviation (SD)) seconds. Those cases where manual editing was needed (136 masks) required 124 ± 120 s. Conclusions. The automatic CNN was able to locate and segment the primary tumor on the T2-weighted images in 94% of cases. There was an extremely high agreement between the automatic tool and the manually edited masks. This is the first study to validate an automatic segmentation model for neuroblastic tumor identification and segmentation with body MR images. The semi-automatic approach with minor manual editing of the deep learning segmentation increases the radiologist’s confidence in the solution with a minor workload for the radiologist.
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- 2023
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47. Prognostic value of genetic alterations and (18)F-FDG PET/CT imaging features in diffuse large B cell lymphoma
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Ferrer-Lores, Blanca, Lozano, Jose, Fuster-Matanzo, Almudena, Mayorga-Ruiz, Irene, Moreno-Ruiz, Paula, Bellvís, Fuensanta, Teruel, Ana B, Saus, Ana, Ortiz, Alfonso, Villamón-Ribate, Eva, Serrano-Alcalá, Alicia, Piñana, José L, Sopena, Pablo, Dosdá, Rosa, Solano, Carlos, Alberich-Bayarri, Ángel, and Terol, María José
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Original Article - Abstract
The current standard front-line therapy for patients with diffuse large-B cell lymphoma (DLBCL)—rituximab plus cyclophosphamide, doxorubicin, vincristine, and prednisone (R-CHOP)—is found to be ineffective in up to one-third of them. Thus, their early identification is an important step towards testing alternative treatment options. In this retrospective study, we assessed the ability of (18)F-FDG PET/CT imaging features (radiomic + PET conventional parameters) plus clinical data, alone or in combination with genomic parameters to predict complete response to first-line treatment. Imaging features were extracted from images prior treatment. Lesions were segmented as a whole to reflect tumor burden. Multivariate logistic regression predictive models for response to first-line treatment trained with clinical and imaging features, or with clinical, imaging, and genomic features were developed. For imaging feature selection, a manual selection approach or a linear discriminant analysis (LDA) for dimensionality reduction were applied. Confusion matrices and performance metrics were obtained to assess model performance. Thirty-three patients (median [range] age, 58 [49–69] years) were included, of whom 23 (69.69%) achieved long-term complete response. Overall, the inclusion of genomic features improved prediction ability. The best performance metrics were obtained with the combined model including genomic data and built applying the LDA method (AUC of 0.904, and 90% of balanced accuracy). The amplification of BCL6 was found to significantly contribute to explain response to first-line treatment in both manual and LDA models. Among imaging features, radiomic features reflecting lesion distribution heterogeneity (GLSZM_GrayLevelVariance, Sphericity and GLCM_Correlation) were predictors of response in manual models. Interestingly, when the dimensionality reduction was applied, the whole set of imaging features-mostly composed of radiomic features-significantly contributed to explain response to front-line therapy. A nomogram predictive for response to first-line treatment was constructed. In summary, a combination of imaging features, clinical variables and genomic data was able to successfully predict complete response to first-line treatment in DLBCL patients, with the amplification of BCL6 as the genetic marker retaining the highest predictive value. Additionally, a panel of imaging features may provide important information when predicting treatment response, with lesion dissemination-related radiomic features deserving especial attention.
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- 2023
48. Automated prostate multi-regional segmentation in magnetic resonance using fully convolutional neural networks
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Ana Jimenez-Pastor, Rafael Lopez-Gonzalez, Belén Fos-Guarinos, Fabio Garcia-Castro, Mark Wittenberg, Asunción Torregrosa-Andrés, Luis Marti-Bonmati, Margarita Garcia-Fontes, Pablo Duarte, Juan Pablo Gambini, Leonardo Kayat Bittencourt, Felipe Campos Kitamura, Vasantha Kumar Venugopal, Vidur Mahajan, Pablo Ros, Emilio Soria-Olivas, and Angel Alberich-Bayarri
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Radiology, Nuclear Medicine and imaging ,General Medicine - Published
- 2023
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49. Quantification of Liver Iron Overload with MRI: Review and Guidelines from the ESGAR and SAR
- Author
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Scott B. Reeder, Takeshi Yokoo, Manuela França, Diego Hernando, Ángel Alberich-Bayarri, José María Alústiza, Yves Gandon, Benjamin Henninger, Claudia Hillenbrand, Kartik Jhaveri, Musturay Karçaaltıncaba, Jens-Peter Kühn, Amirkasra Mojtahed, Suraj D. Serai, Richard Ward, John C. Wood, Jin Yamamura, Luis Martí-Bonmatí, University of Wisconsin-Madison, Université de Rennes (UR), and CHU Pontchaillou [Rennes]
- Subjects
[PHYS]Physics [physics] ,Radiology, Nuclear Medicine and imaging - Abstract
International audience; Accumulation of excess iron in the body, or systemic iron overload, results from a variety of causes. The concentration of iron in the liver is linearly related to the total body iron stores and, for this reason, quantification of liver iron concentration (LIC) is widely regarded as the best surrogate to assess total body iron. Historically assessed using biopsy, there is a clear need for noninvasive quantitative imaging biomarkers of LIC. MRI is highly sensitive to the presence of tissue iron and has been increasingly adopted as a noninvasive alternative to biopsy for detection, severity grading, and treatment monitoring in patients with known or suspected iron overload. Multiple MRI strategies have been developed in the past 2 decades, based on both gradient-echo and spin-echo imaging, including signal intensity ratio and relaxometry strategies. However, there is a general lack of consensus regarding the appropriate use of these methods. The overall goal of this article is to summarize the current state of the art in the clinical use of MRI to quantify liver iron content and to assess the overall level of evidence of these various methods. Based on this summary, expert consensus panel recommendations on best practices for MRI-based quantification of liver iron are provided.
- Published
- 2023
- Full Text
- View/download PDF
50. Pancreatic cancer, radiomics and artificial intelligence
- Author
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Luis Marti-Bonmati, Leonor Cerdá-Alberich, Alexandre Pérez-Girbés, Roberto Díaz Beveridge, Eva Montalvá Orón, Judith Pérez Rojas, and Angel Alberich-Bayarri
- Subjects
Pancreatic Neoplasms ,Artificial Intelligence ,Humans ,Radiology, Nuclear Medicine and imaging ,General Medicine ,Prognosis ,Carcinoma, Pancreatic Ductal - Abstract
Patients with pancreatic ductal adenocarcinoma (PDAC) are generally classified into four categories based on contrast-enhanced CT at diagnosis: resectable, borderline resectable, unresectable, and metastatic disease. In the initial grading and staging of PDAC, structured radiological templates are useful but limited, as there is a need to define the aggressiveness and microscopic disease stage of these tumours to ensure adequate treatment allocation. Quantitative imaging analysis allows radiomics and dynamic imaging features to provide information of clinical outcomes, and to construct clinical models based on radiomics signatures or imaging phenotypes. These quantitative features may be used as prognostic and predictive biomarkers in clinical decision-making, enabling personalised management of advanced PDAC. Deep learning and convolutional neural networks also provide high level bioinformatics tools that can help define features associated with a given aspect of PDAC biology and aggressiveness, paving the way to define outcomes based on these features. Thus, the prediction of tumour phenotype, treatment response and patient prognosis may be feasible by using such comprehensive and integrated radiomics models. Despite these promising results, quantitative imaging is not ready for clinical implementation in PDAC. Limitations include the instability of metrics and lack of external validation. Large properly annotated datasets, including relevant semantic features (demographics, blood markers, genomics), image harmonisation, robust radiomics analysis, clinically significant tasks as outputs, comparisons with gold-standards (such as TNM or pretreatment classifications) and fully independent validation cohorts, will be required for the development of trustworthy radiomics and artificial intelligence solutions to predict PDAC aggressiveness in a clinical setting.
- Published
- 2022
- Full Text
- View/download PDF
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