23 results on '"Arenas, F."'
Search Results
2. Combined effects of climate change and environmentally relevant mixtures of endocrine disrupting compounds on the fitness and gonads' maturation dynamics of Nucella lapillus (Gastropoda)
- Author
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Morais, H., Arenas, F., Cruzeiro, C., Galante-Oliveira, S., and Cardoso, P.G.
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- 2023
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3. Anaerobic RSH-dependent tellurite reduction contributes to Escherichia coli tolerance against tellurite
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Muñoz-Diaz, P., Jiménez, K., Luraschi, R., Cornejo, F., Figueroa, M., Vera, C., Rivas-Pardo, A., Sandoval, J. M., Vásquez, C., and Arenas, F.
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- 2022
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4. Fungal Planet description sheets: 1436-1477.
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Tan, Y. P., Bishop-Hurley, S. L., Shivas, R. G., Cowan, D. A., Maggs-Kölling, G., Maharachchikumbura, S. S. N., Pinruan, U., Bransgrove, K. L., De la Peña-Lastra, S., Larsson, E., Lebel, T., Mahadevakumar, S., Mateos, A., Osieck, E. R., Rigueiro-Rodríguez, A., Sommai, S., Ajithkumar, K., Akulov, A., Anderson, F. E., and Arenas, F. more...
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EUROPEAN aspen ,LEAF anatomy ,CYPERUS ,LEAF spots ,PIGEON pea ,ENGLISH oak - Abstract
Novel species of fungi described in this study include those from various countries as follows: Argentina, Colletotrichum araujiae on leaves, stems and fruits of Araujia hortorum. Australia, Agaricus pateritonsus on soil, Curvularia fraserae on dying leaf of Bothriochloa insculpta, Curvularia millisiae from yellowing leaf tips of Cyperus aromaticus, Marasmius brunneolorobustus on well-rotted wood, Nigrospora cooperae from necrotic leaf of Heteropogon contortus, Penicillium tealii from the body of a dead spider, Pseudocercospora robertsiorum from leaf spots of Senna tora, Talaromyces atkinsoniae from gills of Marasmius crinis-equi and Zasmidium pearceae from leaf spots of Smilax glyciphylla. Brazil, Preussia bezerrensis from air. Chile, Paraconiothyrium kelleni from the rhizosphere of Fragaria chiloensis subsp. chiloensis f. chiloensis. Finland, Inocybe udicola on soil in mixed forest with Betula pendula, Populus tremula, Picea abies and Alnus incana. France, Myrmecridium normannianum on dead culm of unidentified Poaceae. Germany, Vexillomyces fraxinicola from symptomless stem wood of Fraxinus excelsior. India, Diaporthe limoniae on infected fruit of Limonia acidissima, Didymella naikii on leaves of Cajanus cajan, and Fulvifomes mangroviensis on basal trunk of Aegiceras corniculatum. Indonesia, Penicillium ezekielii from Zea mays kernels. Namibia, Neocamarosporium calicoremae and Neocladosporium calicoremae on stems of Calicorema capitata, and Pleiochaeta adenolobi on symptomatic leaves of Adenolobus pechuelii. Netherlands, Chalara pteridii on stems of Pteridium aquilinum, Neomackenziella juncicola (incl. Neomackenziella gen. nov.) and Sporidesmiella junci from dead culms of Juncus effusus. Pakistan, Inocybe longistipitata on soil in a Quercus forest. Poland, Phytophthora viadrina from rhizosphere soil of Quercus robur, and Septoria krystynae on leaf spots of Viscum album. Portugal (Azores), Acrogenospora stellata on dead wood or bark. South Africa, Phyllactinia greyiae on leaves of Greyia sutherlandii and Punctelia anae on bark of Vachellia karroo. Spain, Anteaglonium lusitanicum on decaying wood of Prunus lusitanica subsp. lusitanica, Hawksworthiomyces riparius from fluvial sediments, Lophiostoma carabassense endophytic in roots of Limbarda crithmoides, and Tuber mohedanoi from calcareus soils. Spain (Canary Islands), Mycena laurisilvae on stumps and woody debris. Sweden, Elaphomyces geminus from soil under Quercus robur. Thailand, Lactifluus chiangraiensis on soil under Pinus merkusii, Lactifluus nakhonphanomensis and Xerocomus sisongkhramensis on soil under Dipterocarpus trees. Ukraine, Valsonectria robiniae on dead twigs of Robinia hispida. USA, Spiralomyces americanus (incl. Spiralomyces gen. nov.) from office air. Morphological and culture characteristics are supported by DNA barcodes. [ABSTRACT FROM AUTHOR] more...
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- 2022
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5. Anaerobic RSH-dependent tellurite reduction contributes to Escherichia coli toleranceagainst tellurite
- Author
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Muñoz-Diaz, P., Jiménez, K., Luraschi, R., Cornejo, F., Figueroa, M., Vera, C., Rivas-Pardo, A., Sandoval, J. M., Vásquez, C., and Arenas, F.
- Abstract
Background: Tellurium is a rare metalloid that exerts high toxicity on cells, especially on bacteria, partly due to reactive oxygen species (ROS) generation. Moreover, it has also been observed that tellurite can target free cell thiols groups (RSH) (i.e. reduced glutathione (GSH)), enhancing the cellular redox imbalance. Additionally, in vitro experiments have suggested that several enzymes can reduce tellurite (IV) to its elemental form (0); where RSH present on their active sites may be responsible for the process. Nevertheless, the mechanisms implemented by bacteria for tellurite reduction and its role in resistance have not been evaluated in vivo. Results: This work shows that tellurite reduction to elemental tellurium is increased under anaerobic conditions in E. colicells. The in vivo tellurite reduction is related to the intracellular concentration of total RSH, in the presence and absence of oxygen. This metabolization of tellurite directly contributes to the resistance of the bacteria to the oxyanion. Conclusions: We demonstrated that in vivo tellurite reduction is related to the intracellular thiol concentration, i.e. large availability of cellular RSH groups, results in a more significant reduction of tellurite. Furthermore, we observed that, when the bacterium exhibits less resistance to the oxyanion, a decreased tellurite reduction was seen, affecting the growth fitness. Together, these results let us propose that tellurite reduction and the intracellular RSH content are related to the oxyanion bacterial resistance, this tripartite mechanism in an oxygen-independent anaerobic process. more...
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- 2022
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6. Revealing the Potential of Fucus vesiculosus Linnaeus for Cosmetic Purposes: Chemical Profile and Biological Activities of Commercial and Wild Samples.
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Muñoz-Quintana M, Padrón-Sanz C, Dolbeth M, Arenas F, Vasconcelos V, and Lopes G
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- Animals, RAW 264.7 Cells, Mice, Hyaluronoglucosaminidase antagonists & inhibitors, Nitric Oxide metabolism, Phenols pharmacology, Phenols analysis, Phenols chemistry, Carotenoids pharmacology, Chromatography, High Pressure Liquid, Xanthophylls, Fucus chemistry, Cosmetics chemistry, Cosmetics pharmacology, Antioxidants pharmacology, Antioxidants chemistry, Monophenol Monooxygenase antagonists & inhibitors, Anti-Inflammatory Agents pharmacology, Anti-Inflammatory Agents chemistry
- Abstract
The natural products industry is gaining increasing interest, not only due to modern lifestyles becoming more aware of environmental and sustainability issues but also because of the loss of efficacy and undesirable side effects of synthetic ingredients. This pioneering study provides a comprehensive comparison between extracts obtained from wild and commercial samples of Fucus vesiculosus Linnaeus, highlighting their multifaceted benefits in cosmetic applications. The antiaging potential of acetone (70 and 90%) and ethanol 60% extracts from wild and commercial samples of F. vesiculosus , focusing on their application in cosmetics, was explored. The extracts were chemically characterized, their carotenoid profiles being established by HPLC, and the total phenolic content and phlorotannins by spectrophotometry. The extracts were evaluated for their antioxidant potential against the physiologic free radicals superoxide anion radical (O
2 •- ) and nitric oxide (• NO), for their ability to inhibit the enzymes hyaluronidase and tyrosinase, and for their anti-inflammatory potential in the macrophage cell model RAW 264.7. The acetone 70% extract of wild F. vesiculosus was the richest in fucoxanthin, which accounted for more than 67% of the total pigments identified, followed by the acetone 90% extract of the same sample, where both fucoxanthin and pheophytin- a represented 40% of the total pigments. The same behavior was observed for phenolic compounds, with the ethanol 60% presenting the lowest values. A chemical correlation could be established between the chemical composition and the biological activities, with acetone extracts from the wild F. vesiculosus , richer in fucoxanthin and phlorotannins, standing out as natural ingredients with anti-aging potential. Acetone 90% can be highlighted as the most effective extraction solvent, their extracts presenting the highest radicals scavenging capacity, ability to inhibit tyrosinase to a greater extent than the commercial ingredient kojic acid, and potential to slow down the inflammatory process. more...- Published
- 2024
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7. What if the upwelling weakens? Effects of rising temperature and nutrient depletion on coastal assemblages.
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Chabrerie A and Arenas F
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- Portugal, Seawater, Chlorophyll, Kelp, Global Warming, Temperature, Ecosystem, Nutrients
- Abstract
Surface temperature of the oceans has increased globally over the past decades. In coastal areas influenced by eastern boundary upwelling systems (EBUS), winds push seawater offshore and deep, cold and nutrient-rich seawater rise towards the surface, partially buffering global warming. On the North coast of Portugal, the NW Iberian upwelling system allows extensive kelp forests to thrive in these "boreal-like" conditions, fostering highly diverse and productive communities. However, the warming of the upper layer of the ocean may weaken this upwelling, leading to higher sea surface temperature and lower nutrient input in the coastal areas. The effects of these changes on the structure and function of coastal ecosystems remain unexplored. The present study aimed to examine the combined effects of elevated temperature and nutrient depletion on semi-naturally structured assemblages. The eco-physiological responses investigated included growth, chlorophyll fluorescence and metabolic rates at the levels of individual species and whole assemblages. Our findings showed interactive effects of the combination of elevated temperature with nutrient depletion on the large canopy-forming species (i.e., kelp). As main contributor to community response, those effects drove the whole assemblage responses to significant losses in productivity levels. We also found an additive effect of elevated temperature and reduced nutrients on sub-canopy species (i.e., Chondrus crispus), while turfs were only affected by temperature. Our results suggest that under weakening upwelling scenarios, the ability of the macroalgal assemblages to maintain high productivity rates could be seriously affected and predict a shift in community composition with the loss of marine forests., (© 2024. The Author(s).) more...
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- 2024
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8. Patient-derived follicular lymphoma spheroids recapitulate lymph node signaling and immune profile uncovering galectin-9 as a novel immunotherapeutic target.
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Dobaño-López C, Valero JG, Araujo-Ayala F, Nadeu F, Gava F, Faria C, Norlund M, Morin R, Bernes-Lasserre P, Arenas F, Grau M, López C, López-Oreja I, Serrat N, Martínez-Farran A, Hernández L, Playa-Albinyana H, Giménez R, Beà S, Campo E, Lagarde JM, López-Guillermo A, Magnano L, Colomer D, Bezombes C, and Pérez-Galán P more...
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- Humans, Spheroids, Cellular, Immunotherapy methods, Signal Transduction, Tumor Cells, Cultured, Lymphoma, Follicular immunology, Lymphoma, Follicular pathology, Lymphoma, Follicular therapy, Galectins, Lymph Nodes pathology, Lymph Nodes immunology, Tumor Microenvironment immunology
- Abstract
Follicular lymphoma (FL), the most common indolent non-Hodgkin lymphoma, constitutes a paradigm of immune tumor microenvironment (TME) contribution to disease onset, progression, and heterogenous clinical outcome. Here we present the first FL-Patient Derived Lymphoma Spheroid (FL-PDLS), including fundamental immune actors and features of TME in FL lymph nodes (LNs). FL-PDLS is organized in disc-shaped 3D structures composed of proliferating B and T cells, together with macrophages with an intermediate M1/M2 phenotype. FL-PDLS recapitulates the most relevant B-cell transcriptional pathways present in FL-LN (proliferation, epigenetic regulation, mTOR, adaptive immune system, among others). The T cell compartment in the FL-PDLS preserves CD4 subsets (follicular helper, regulatory, and follicular regulatory), also encompassing the spectrum of activation/exhaustion phenotypes in CD4 and CD8 populations. Moreover, this system is suitable for chemo and immunotherapy testing, recapitulating results obtained in the clinic. FL-PDLS allowed uncovering that soluble galectin-9 limits rituximab, rituximab, plus nivolumab/TIM-3 antitumoral activities. Blocking galectin-9 improves rituximab efficacy, highlighting galectin-9 as a novel immunotherapeutic target in FL. In conclusion, FL-PDLS maintains the crosstalk between malignant B cells and the immune LN-TME and constitutes a robust and multiplexed pre-clinical tool to perform drug screening in a patient-derived system, advancing toward personalized therapeutic approaches., (© 2024. The Author(s).) more...
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- 2024
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9. Differences in the temporal trends of childhood overweight and obesity in Spain in the 2011-2019 period by sex, age and socioeconomic level: results of the ALADINO study.
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Gutiérrez-González E, Andreu-Ivorra B, Rollán-Gordo A, Tejedor-Romero L, Sánchez-Arenas F, and García-Solano M
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- Humans, Spain epidemiology, Male, Child, Female, Cross-Sectional Studies, Prevalence, Sex Distribution, Sex Factors, Time Factors, Age Distribution, Obesity, Abdominal epidemiology, Age Factors, Pediatric Obesity epidemiology, Overweight epidemiology, Socioeconomic Factors
- Abstract
Introduction: Childhood excess weight is a growing public health problem. The aim of this study was to assess temporal trends in the prevalence of overweight, obesity and central obesity in schoolchildren aged 6-9 years in Spain between 2011 and 2019 based on demographic and socioeconomic characteristics., Methodology: The analysis included data from the 2011, 2015 and 2019 rounds of the cross-sectional observational and descriptive ALADINO study in schoolchildren of both sexes aged 6-9 years. We conducted a descriptive analysis of the trends in the prevalence of overweight and obesity (defined according to the criteria of the World Health Organization and the International Obesity Task Force) and of central obesity, in addition to associated demographic and socioeconomic variables., Results: Between 2011 and 2019, the prevalence of overweight (WHO criteria) decreased in boys aged 6, 7 and 8 years (by -5.4%, -5.7% and -5.3%, respectively) and boys whose parents had a higher educational attainment (by -5.3%). In relation to the socioeconomic level, overweight in boys declined at all income levels. However, between 2011 and 2019, both the prevalence of overweight in girls and the prevalence of obesity (applying the WHO and IOTF criteria) and the prevalence of central obesity in both sexes remained stable., Conclusions: The prevalence of overweight and the prevalence of obesity in schoolchildren aged 6-9 years in Spain remain high. Between 2011 and 2019, the prevalence of overweight in children aged 6-8 years and in children whose parents had university degrees decreased, whereas obesity in boys, overweight and obesity in girls and central obesity in both sexes remained stable., (Copyright © 2024 Asociación Española de Pediatría. Published by Elsevier España, S.L.U. All rights reserved.) more...
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- 2024
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10. Chronic lymphocytic leukemia patient-derived xenografts recapitulate clonal evolution to Richter transformation.
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Playa-Albinyana H, Arenas F, Royo R, Giró A, López-Oreja I, Aymerich M, López-Guerra M, Frigola G, Beà S, Delgado J, Garcia-Roves PM, Campo E, Nadeu F, and Colomer D
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- Humans, Animals, Mice, Heterografts, Clonal Evolution genetics, Prognosis, Cell Transformation, Neoplastic genetics, Cell Transformation, Neoplastic pathology, Leukemia, Lymphocytic, Chronic, B-Cell genetics, Leukemia, Lymphocytic, Chronic, B-Cell pathology, Lymphoma, Large B-Cell, Diffuse genetics, Lymphoma, Large B-Cell, Diffuse pathology
- Abstract
Chronic lymphocytic leukemia (CLL) is a B-cell neoplasm with a heterogeneous clinical behavior. In 5-10% of patients the disease transforms into a diffuse large-B cell lymphoma known as Richter transformation (RT), which is associated with dismal prognosis. Here, we aimed to establish patient-derived xenograft (PDX) models to study the molecular features and evolution of CLL and RT. We generated two PDXs by injecting CLL (PDX12) and RT (PDX19) cells into immunocompromised NSG mice. Both PDXs were morphologically and phenotypically similar to RT. Whole-genome sequencing analysis at different time points of the PDX evolution revealed a genomic landscape similar to RT tumors from both patients and uncovered an unprecedented RT subclonal heterogeneity and clonal evolution during PDX generation. In PDX12, the transformed cells expanded from a very small subclone already present at the CLL stage. Transcriptomic analysis of PDXs showed a high oxidative phosphorylation (OXPHOS) and low B-cell receptor (BCR) signaling similar to the RT in the patients. IACS-010759, an OXPHOS inhibitor, reduced proliferation, and circumvented resistance to venetoclax. In summary, we have generated new RT-PDX models, one of them from CLL cells that mimicked the evolution of CLL to RT uncovering intrinsic features of RT cells of therapeutical value., (© 2023. The Author(s).) more...
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- 2024
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11. Evaluation of a hydrodynamic cavitation-type bubble generator in a prototype bench-scale flotation unit for poultry processing wastewater treatment.
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Legarda Bermúdez G, Gaviria López C, and Guarín Arenas F
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- Animals, Hydrodynamics, Poultry, Hydrocarbons, Wastewater, Water Purification methods
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Dissolved Air Flotation (DAF) systems are designed to remove oil and grease (O&G) and total suspended solids (TSS) in wastewater treatment. These systems require saturation tanks, water pumps, and high-pressure compressors to control the pressure, hydraulic retention time, and airflow parameters. DAF process efficiency depends on complex operational controls associated with these components, and the most critical aspect of an effectively operating DAF unit is a generated bubble size. This work presents the design and operational test of a flotation unit prototype that replaces the saturation tank and high-pressure compressors present in DAF with the CARMIN microbubble injector, the evaluation of the proposed system's TSS and O&G removal efficiency was carried out considering different initial configurations of the injector to change the generated microbubble size, four synthetic wastewater solutions, and poly aluminum chloride as a flocculant to establish the potential of this system for the poultry processing wastewater treatment. Mean microbubble size results were obtained from 47.41 µm to 116.17 µm. The average removal efficiency of TSS exceeded 65% under a high concentration of suspended particles (1,560 mg/l) and 80% under a lower TSS concentration (795 mg/l). Meanwhile, 70% and 90% of O&G were removed from high (400 mg/l) and low (100 mg/l) initial O&G concentrations, respectively. These removal levels are similar to those reported in the literature for DAF for poultry processing wastewater, albeit with a simple configuration and better controllability and scalability. more...
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- 2024
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12. SF3B1 mutation-mediated sensitization to H3B-8800 splicing inhibitor in chronic lymphocytic leukemia.
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López-Oreja I, Gohr A, Playa-Albinyana H, Giró A, Arenas F, Higashi M, Tripathi R, López-Guerra M, Irimia M, Aymerich M, Valcárcel J, Bonnal S, and Colomer D
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- Mice, Animals, RNA Splicing Factors genetics, RNA Precursors, Phosphoproteins genetics, Mutation genetics, RNA Splice Sites, Transcription Factors genetics, Leukemia, Lymphocytic, Chronic, B-Cell drug therapy, Leukemia, Lymphocytic, Chronic, B-Cell genetics, Leukemia, Lymphocytic, Chronic, B-Cell pathology, Antineoplastic Agents
- Abstract
Splicing factor 3B subunit 1 (SF3B1) is involved in pre-mRNA branch site recognition and is the target of antitumor-splicing inhibitors. Mutations in SF3B1 are observed in 15% of patients with chronic lymphocytic leukemia (CLL) and are associated with poor prognosis, but their pathogenic mechanisms remain poorly understood. Using deep RNA-sequencing data from 298 CLL tumor samples and isogenic SF3B1 WT and K700E-mutated CLL cell lines, we characterize targets and pre-mRNA sequence features associated with the selection of cryptic 3' splice sites upon SF3B1 mutation, including an event in the MAP3K7 gene relevant for activation of NF-κB signaling. Using the H3B-8800 splicing modulator, we show, for the first time in CLL, cytotoxic effects in vitro in primary CLL samples and in SF3B1 -mutated isogenic CLL cell lines, accompanied by major splicing changes and delayed leukemic infiltration in a CLL xenotransplant mouse model. H3B-8800 displayed preferential lethality towards SF3B1 -mutated cells and synergism with the BCL2 inhibitor venetoclax, supporting the potential use of SF3B1 inhibitors as a novel therapeutic strategy in CLL., (© 2023 López-Oreja et al.) more...
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- 2023
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13. Socioeconomic and gender inequalities in childhood obesity in Spain.
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Gutiérrez-González E, Sánchez Arenas F, López-Sobaler AM, Andreu Ivorra B, Rollán Gordo A, and García-Solano M
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- Male, Female, Humans, Child, Spain epidemiology, Gender Equity, Socioeconomic Factors, Social Class, Pediatric Obesity epidemiology
- Abstract
Introduction: Childhood obesity is inversely associated with household socioeconomic status in high-income countries. Our aim was to explore the association between childhood weight status and household socioeconomic status in Spain in relation to family characteristics, perceptions and lifestyle habits and the school environment., Methods: We performed a descriptive analysis of child weight status according to family socioeconomic factors and mediating variables based on data from the ALADINO 2019 study in a sample of 16,665 schoolchildren representative of the population aged 6-9 years in Spain., Results: The prevalence of childhood obesity in households with low socioeconomic status (26.8% boys; 20.4% girls) was, in both sexes, twice as high as in those with higher socioeconomic status (12.1% boys; 8.7% girls). Unhealthy eating habits, sedentary lifestyles (mainly in girls) and the presence of screens in the bedroom (more prevalent in boys) were more frequent in school-aged children from low-income households. On the other hand, in the most disadvantaged households, a history of breastfeeding and physical activity (especially in girls) were less frequent. Similarly, schools attended by children from low-income households were less likely to have their own kitchens and indoor gymnasiums or offer sports activities., Conclusion: A lower household socioeconomic status was associated with poorer dietary and physical activity habits and certain characteristics of the family and school environments that mediate the inverse association between household socioeconomic status and the prevalence of childhood obesity. Girls were less physically active and reported more sedentary lifestyles, while boys had greater access to screens. Interventions to combat childhood obesity should address the identified inequalities., (Copyright © 2023 Asociación Española de Pediatría. Published by Elsevier España, S.L.U. All rights reserved.) more...
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- 2023
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14. Peroxyl radicals modify 6-phosphogluconolactonase from Escherichia coli via oxidation of specific amino acids and aggregation which inhibits enzyme activity.
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Reyes JS, Fuentes-Lemus E, Romero J, Arenas F, Fierro A, Davies MJ, and López-Alarcón C
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- NADP, Oxidation-Reduction, Amino Acids chemistry, Escherichia coli genetics
- Abstract
6-phosphogluconolactonase (6PGL) catalyzes the second reaction of the pentose phosphate pathway (PPP) converting 6-phosphogluconolactone to 6-phosphogluconate. The PPP is critical to the generation of NADPH and metabolic intermediates, but some of its components are susceptible to oxidative inactivation. Previous studies have characterized damage to the first (glucose-6-phosphate dehydrogenase) and third (6-phosphogluconate dehydrogenase) enzymes of the pathway, but no data are available for 6PGL. This knowledge gap is addressed here. Oxidation of Escherichia coli 6PGL by peroxyl radicals (ROO
• , from AAPH (2,2'-azobis(2-methylpropionamidine) dihydrochloride) was examined using SDS-PAGE, amino acid consumption, liquid chromatography with mass detection (LC-MS), protein carbonyl formation and computational methods. NADPH generation was assessed using mixtures all three enzymes of the oxidative phase of the PPP. Incubation of 6PGL with 10 or 100 mM AAPH resulted in protein aggregation mostly due to reducible (disulfide) bonds. High fluxes of ROO• induced consumption of Cys, Met and Trp, with the Cys oxidation rationalizing the aggregate formation. Low levels of carbonyls were detected, while LC-MS analyses provided evidence for oxidation of selected Trp and Met residues (Met1, Trp18, Met41, Trp203, Met220 and Met221). ROO• elicited little loss of enzymatic activity of monomeric 6PGL, but the aggregates showed diminished NADPH generation. This is consistent with in silico analyses that indicate that the modified Trp and Met are far from the 6-phosphogluconolactone binding site and the catalytic dyad (His130 and Arg179). Together these data indicate that monomeric 6PGL is a robust enzyme towards oxidative inactivation by ROO• and when compared to other PPP enzymes., (Copyright © 2023 Elsevier Inc. All rights reserved.) more...- Published
- 2023
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15. Rapid tropicalization evidence of subtidal seaweed assemblages along a coastal transitional zone.
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de Azevedo J, Franco JN, Vale CG, Lemos MFL, and Arenas F
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- Ecosystem, Biomass, Temperature, Seaweed, Kelp
- Abstract
Anthropogenic climate change, particularly seawater warming, is expected to drive quick shifts in marine species distribution transforming coastal communities. These shifts in distribution will be particularly noticeable in biogeographical transition zones. The continental Portuguese coast stretches from north to south along 900 km. Despite this short spatial scale, the strong physical gradient intensified by the Iberian upwelling creates a transition zone where seaweed species from boreal and Lusitanian-Mediterranean origin coexist. On the northern coast, kelp marine forests thrive in the cold, nutrient-rich oceanic waters. In the south, communities resemble Mediterranean-type seaweed assemblages and are dominated by turfs. Recent evidence suggests that in these coastal areas, marine intertidal species are shifting their distribution edges as a result of rising seawater temperatures. Taking advantage of previous abundance data collected in 2012 from subtidal seaweed communities, a new sampling program was carried out in the same regions in 2018 to assess recent changes. The results confirmed the latitudinal gradient in macroalgal assemblages. More importantly we found significant structural and functional changes in a short period of six years, with regional increases of abundance of warm-affinity species, small seaweeds like turfs. Species richness, diversity, and biomass increase, all accompanied by an increase of community temperature index (CTI). Our findings suggest that subtidal seaweed communities in this transitional area have undergone major changes within a few years. Evidence of "fast tropicalization" of the subtidal communities of the Portuguese coast are strong indication of the effects of anthropic climate change over coastal assemblages., (© 2023. The Author(s).) more...
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- 2023
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16. Management of Patients With Pancreatic Cancer Using the "Right Track" Model.
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Rosenzweig A, Berlin J, Chari S, Kindler H, Matrisian L, Mayoral A, Mills J, Nissen N, Picozzi V, Zelada-Arenas F, and Fleming J
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- Humans, Pancreatic Neoplasms diagnosis, Pancreatic Neoplasms epidemiology, Pancreatic Neoplasms therapy
- Abstract
Pancreatic cancer is one of the few cancer types in the US with incidence and death rates continuing to rise. As the disease threatens to become the second leading cause of cancer-related deaths in the country, it is imperative to review the best practices currently available to extend and improve patient lives. To provide a roadmap for healthcare professionals detecting, diagnosing, and caring for patients with pancreatic cancer as a supplement to national guidelines focused on recommended treatment regimens, the Pancreatic Cancer Action Network (PanCAN)'s Scientific and Medical Affairs staff and expert Scientific and Medical Advisory Board have created a series of position statements. The statements are based upon scientific evidence and clinical observations published in the literature and research conducted through PanCAN's internal programs and initiatives. This review summarizes the rationale and sources for these position statements related to diagnosis, treatment, and care for pancreatic cancer and provides information about resources to make these recommendations accessible to patients and their medical teams. Pancreatic cancer is a complex and extremely challenging disease. Beyond treatment recommendations outlined in national guidelines, steps can be taken to help patients feel better and live longer. Under the framework of the "Right Track" model-right team, right tests, right treatments, data sharing-PanCAN's position statements can provide supplementary guidance to healthcare professionals for the short- and long-term management of patients with the disease., (© The Author(s) 2023. Published by Oxford University Press.) more...
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- 2023
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17. Forecasting distributional shifts of Patella spp. in the Northeast Atlantic Ocean, under climate change.
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Freitas D, Borges D, Arenas F, Pinto IS, and Vale CG
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- Patella, Atlantic Ocean, Temperature, Ecosystem, Climate Change
- Abstract
Mapping species' geographical distribution is fundamental for understanding current patterns and forecasting future changes. Living on rocky shores along the intertidal zone, limpets are vulnerable to climate change, as their range limits are controlled by seawater temperature. Many works have been studying limpets' potential responses to climate change at local and regional scales. Focusing on four Patella species living on the rocky shores of the Portuguese continental coast, this study aims to predict climate change impacts on their global distribution, while exploring the role of the Portuguese intertidal as potential climate refugia. Ecological niche models combine occurrences and environmental data to identify the drivers of these species' distributions, define their current range, and project to future climate scenarios. The distribution of these limpets was mostly defined by low bathymetry (intertidal) and the seawater temperature. Independent of the climate scenario, all species will gain suitable conditions at the northern distribution edge while losing in the south, yet only the extent of occurrence of P. rustica is expected to contract. Apart from the southern coast, maintenance of suitable conditions for these limpets' occurrence was predicted for the western coast of Portugal. The predicted northward range shift follows the observed pattern observed for many intertidal species. Given the ecosystem role of this species, attention should be given to their southern range limits. Under the current upwelling effect, the Portuguese western coast might constitute thermal refugia for limpets in the future., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Francisco Arenas reports financial support was provided by Foundation for Science and Technology., (Copyright © 2023 Elsevier Ltd. All rights reserved.) more...
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- 2023
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18. Are stable isotopes an efficient tool for tracking the effect of anthropogenic activities on mangrove food web structure and function?
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Medina-Contreras D and Arenas F
- Abstract
Understanding and connecting the impact of anthropogenic activities on mangrove food webs is a research challenge. Has research on the subject been able to find answers using stable isotopes? The present opinion paper analyzed the utility of stable isotopes in tracing the impact of anthropogenic activities on mangrove food webs and if the research questions raised could be answered using these chemical markers. Representative research papers (16) focused on the use of stable isotopes (δ
13 C, δ15 N, δ34 S, δ2 H, δD,206Pb/207Pb, and 208Pb/207Pb) to evaluate the effect of anthropogenic activities (Sewage discharge, timber harvesting-deforestation, metallurgical activities, hydrological disruption, aquaculture ponds, and urban development) on mangrove food webs were selected. Each article included at least one group of consumers (invertebrate or fish). Publications only focused on water quality or primary producers were not included. Most studies managed to determine the effect of the anthropogenic activities on the food web's stable isotope values. Based on the above, we concluded that these markers are an effective tool to determine affectation patterns on the structure and function of mangrove food webs. The results obtained herein facilitate the correct management of mangroves and their derived resources., Competing Interests: Conflict of interestThis paper does not present social, political, or economic conflicts of interests. The Opinion paper does not have original data., (© The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.) more...- Published
- 2023
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19. Implications of differential peroxyl radical-induced inactivation of glucose 6-phosphate dehydrogenase and 6-phosphogluconate dehydrogenase for the pentose phosphate pathway.
- Author
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Reyes JS, Fuentes-Lemus E, Figueroa JD, Rojas J, Fierro A, Arenas F, Hägglund PM, Davies MJ, and López-Alarcón C
- Subjects
- Glucosephosphate Dehydrogenase, NADP, Phosphates, Glucose, Phosphogluconate Dehydrogenase, Pentose Phosphate Pathway
- Abstract
Escherichia coli glucose-6-phosphate dehydrogenase (G6PDH) and 6-phosphogluconate dehydrogenase (6PGDH) are key enzymes of the pentose phosphate pathway, responsible for the NADPH production in cells. We investigated modification of both enzymes mediated by peroxyl radicals (ROO
· ) to determine their respective susceptibilities to and mechanisms of oxidation. G6PDH and 6PGDH were incubated with AAPH (2,2'-azobis(2-methylpropionamidine)dihydrochloride), which was employed as ROO· source. The enzymatic activities of both enzymes were determined by NADPH release, with oxidative modifications examined by electrophoresis and liquid chromatography (LC) with fluorescence and mass (MS) detection. The activity of G6PDH decreased up to 62.0 ± 15.0% after 180 min incubation with 100 mM AAPH, whilst almost total inactivation of 6PGDH was determined under the same conditions. Although both proteins contain abundant Tyr (particularly 6PGDH), these residues were minimally affected by ROO· , with Trp and Met being major targets. LC-MS and in silico analysis showed that the modification sites of G6PDH are distant to the active site, consistent with a dispersed distribution of modifications, and inactivation resulting from oxidation of multiple Trp and Met residues. In contrast, the sites of oxidation detected on 6PGDH are located close to its catalytic site indicating a more localized oxidation, and a consequent high susceptibility to ROO· -mediated inactivation., (© 2022. The Author(s).) more...- Published
- 2022
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20. Design and Validation of qPCR-Specific Primers for Quantification of the Marketed Terfezia claveryi and Terfezia crassiverrucosa in Soil.
- Author
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Arenas F, Morte A, and Navarro-Ródenas A
- Abstract
Desert truffle crop is a pioneer in southeastern Spain, a region where native edible hypogeous fungi are adapted to the semiarid areas with low annual rainfall. Terfezia claveryi Chatin was the first species of desert truffle to be cultivated, and has been increasing in recent years as an alternative rainfed crop in the Iberian Peninsula. However, its behaviour in the field has yet not been investigated. For this purpose, specific primers were designed for the soil DNA quantification of both T. claveryi and Terfezia crassiverrucosa and a real-time qPCR protocol was developed, using the ITS rDNA region as a target. Moreover, a young desert truffle orchard was sampled for environmental validation. The results showed the highest efficiency for the TerclaF3/TerclaR1 primers pair, 89%, and the minimal fungal biomass that could be reliable detected was set at 4.23 µg mycelium/g soil. The spatial distribution of fungal biomass was heterogeneous, and there was not a direct relationship between the quantity of winter soil mycelium and the location/productivity of desert truffles. This protocol could be applied to tracking these species in soil and understand their mycelial dynamics in plantations and wild areas. more...
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- 2022
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21. Anaerobiosis favors biosynthesis of single and multi-element nanostructures.
- Author
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Ríos-Silva M, Pérez M, Luraschi R, Vargas E, Silva-Andrade C, Valdés J, Sandoval JM, Vásquez C, and Arenas F
- Subjects
- Anaerobiosis, Cadmium, Complex Mixtures, Selenious Acid, Sulfides, Sulfites, Sulfur, Tellurium, Nanostructures chemistry, Salts
- Abstract
Herein we report the use of an environmental multimetal(loid)-resistant strain, MF05, to biosynthesize single- or multi-element nanostructures under anaerobic conditions. Inorganic nanostructure synthesis typically requires methodologies and conditions that are harsh and environmentally hazardous. Thus, green/eco-friendly procedures are desirable, where the use of microorganisms and their extracts as bionanofactories is a reliable strategy. First, MF05 was entirely sequenced and identified as an Escherichia coli-related strain with some genetic differences from the traditional BW25113. Secondly, we compared the CdS nanostructure biosynthesis by whole-cell in a design defined minimal culture medium containing sulfite as the only sulfur source to obtain sulfide reduction from a low-cost chalcogen reactant. Under anaerobic conditions, this process was greatly favored, and irregular CdS (ex. 370 nm; em. 520-530 nm) was obtained. When other chalcogenites were tested (selenite and tellurite), only spherical Se0 and elongated Te0 nanostructures were observed by TEM and analyzed by SEM-EDX. In addition, enzymatic-mediated chalcogenite (sulfite, selenite, and tellurite) reduction was assessed by using MF05 crude extracts in anaerobiosis; similar results for nanostructures were obtained; however Se0 and Te0 formation were more regular in shape and cleaner (with less background). Finally, the in vitro nanostructure biosynthesis was assessed with salts of Ag, Au, Cd, and Li alone or in combination with chalcogenites. Several single or binary nanostructures were detected. Our results showed that MF05 is a versatile anaerobic bionanofactory for different types of inorganic NS. synthesis., Competing Interests: The authors have declared that no competing interests exist. more...
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- 2022
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22. Fungal Planet description sheets: 1383-1435.
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Crous PW, Boers J, Holdom D, Osieck ER, Steinrucken TV, Tan YP, Vitelli JS, Shivas RG, Barrett M, Boxshall AG, Broadbridge J, Larsson E, Lebel T, Pinruan U, Sommai S, Alvarado P, Bonito G, Decock CA, De la Peña-Lastra S, Delgado G, Houbraken J, Maciá-Vicente JG, Raja HA, Rigueiro-Rodríguez A, Rodríguez A, Wingfield MJ, Adams SJ, Akulov A, Al-Hidmi T, Antonín V, Arauzo S, Arenas F, Armada F, Aylward J, Bellanger JM, Berraf-Tebbal A, Bidaud A, Boccardo F, Cabero J, Calledda F, Corriol G, Crane JL, Dearnaley JDW, Dima B, Dovana F, Eichmeier A, Esteve-Raventós F, Fine M, Ganzert L, García D, Torres-Garcia D, Gené J, Gutiérrez A, Iglesias P, Istel Ł, Jangsantear P, Jansen GM, Jeppson M, Karun NC, Karich A, Khamsuntorn P, Kokkonen K, Kolařík M, Kubátová A, Labuda R, Lagashetti AC, Lifshitz N, Linde C, Loizides M, Luangsa-Ard JJ, Lueangjaroenkit P, Mahadevakumar S, Mahamedi AE, Malloch DW, Marincowitz S, Mateos A, Moreau PA, Miller AN, Molia A, Morte A, Navarro-Ródenas A, Nebesářová J, Nigrone E, Nuthan BR, Oberlies NH, Pepori AL, Rämä T, Rapley D, Reschke K, Robicheau BM, Roets F, Roux J, Saavedra M, Sakolrak B, Santini A, Ševčíková H, Singh PN, Singh SK, Somrithipol S, Spetik M, Sridhar KR, Starink-Willemse M, Taylor VA, van Iperen AL, Vauras J, Walker AK, Wingfield BD, Yarden O, Cooke AW, Manners AG, Pegg KG, and Groenewald JZ more...
- Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia , Agaricus albofoetidus , Agaricus aureoelephanti and Agaricus parviumbrus on soil, Fusarium ramsdenii from stem cankers of Araucaria cunninghamii , Keissleriella sporoboli from stem of Sporobolus natalensis , Leptosphaerulina queenslandica and Pestalotiopsis chiaroscuro from leaves of Sporobolus natalensis , Serendipita petricolae as endophyte from roots of Eriochilus petricola , Stagonospora tauntonensis from stem of Sporobolus natalensis , Teratosphaeria carnegiei from leaves of Eucalyptus grandis × E. camaldulensis and Wongia ficherai from roots of Eragrostis curvula. Canada , Lulworthia fundyensis from intertidal wood and Newbrunswickomyces abietophilus (incl. Newbrunswickomyces gen. nov.) on buds of Abies balsamea. Czech Republic , Geosmithia funiculosa from a bark beetle gallery on Ulmus minor and Neoherpotrichiella juglandicola (incl. Neoherpotrichiella gen. nov.) from wood of Juglans regia. France , Aspergillus rouenensis and Neoacrodontium gallica (incl. Neoacrodontium gen. nov.) from bore dust of Xestobium rufovillosum feeding on Quercus wood, Endoradiciella communis (incl. Endoradiciella gen. nov.) endophytic in roots of Microthlaspi perfoliatum and Entoloma simulans on soil. India , Amanita konajensis on soil and Keithomyces indicus from soil. Israel , Microascus rothbergiorum from Stylophora pistillata. Italy , Calonarius ligusticus on soil. Netherlands , Appendopyricularia juncicola (incl. Appendopyricularia gen. nov.), Eriospora juncicola and Tetraploa juncicola on dead culms of Juncus effusus , Gonatophragmium physciae on Physcia caesia and Paracosmospora physciae (incl. Paracosmospora gen. nov.) on Physcia tenella , Myrmecridium phragmitigenum on dead culm of Phragmites australis , Neochalara lolae on stems of Pteridium aquilinum , Niesslia nieuwwulvenica on dead culm of undetermined Poaceae , Nothodevriesia narthecii (incl. Nothodevriesia gen. nov.) on dead leaves of Narthecium ossifragum and Parastenospora pini (incl. Parastenospora gen. nov.) on dead twigs of Pinus sylvestris. Norway , Verticillium bjoernoeyanum from sand grains attached to a piece of driftwood on a sandy beach. Portugal , Collybiopsis cimrmanii on the base of living Quercus ilex and amongst dead leaves of Laurus and herbs. South Africa , Paraproliferophorum hyphaenes (incl. Paraproliferophorum gen. nov.) on living leaves of Hyphaene sp. and Saccothecium widdringtoniae on twigs of Widdringtonia wallichii. Spain , Cortinarius dryosalor on soil, Cyphellophora endoradicis endophytic in roots of Microthlaspi perfoliatum , Geoglossum lauri-silvae on soil, Leptographium gemmatum from fluvial sediments, Physalacria auricularioides from a dead twig of Castanea sativa , Terfezia bertae and Tuber davidlopezii in soil. Sweden , Alpova larskersii , Inocybe alpestris and Inocybe boreogodeyi on soil. Thailand , Russula banwatchanensis , Russula purpureoviridis and Russula lilacina on soil. Ukraine , Nectriella adonidis on overwintered stems of Adonis vernalis. USA , Microcyclus jacquiniae from living leaves of Jacquinia keyensis and Penicillium neoherquei from a minute mushroom sporocarp. Morphological and culture characteristics are supported by DNA barcodes. Citation : Crous PW, Boers J, Holdom D, et al. 2022. Fungal Planet description sheets: 1383-1435. Persoonia 48: 261-371. https://doi.org/10.3767/persoonia.2022.48.08., (© 2022 Naturalis Biodiversity Center & Westerdijk Fungal Biodiversity Institute.) more...
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- 2022
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23. Desert truffle mycorrhizosphere harbors organic acid releasing plant growth-promoting rhizobacteria, essentially during the truffle fruiting season.
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Arenas F, López-García Á, Berná LM, Morte A, and Navarro-Ródenas A
- Subjects
- Bacteria genetics, Plant Development, Plant Roots microbiology, Seasons, Mycorrhizae, Soil Microbiology
- Abstract
Desert truffle is becoming a new crop in semiarid areas. Climatic parameters and the presence of microorganisms influence the host plant physiology and alter desert truffle production. Desert truffle plants present a typical summer deciduous plant phenology divided into four stages: summer dormancy, autumn bud break, winter photosynthetic activity, and spring fruiting. We hypothesize that the bacterial community associated with desert truffle plants will show a seasonal trend linked to their plant growth-promoting rhizobacteria (PGPR) traits. This information will provide us with a better understanding about its potential role in this symbiosis and possible management implementations. Bacteria were isolated from root-adhering soil at the four described seasons. A total of 417 isolated bacteria were phenotypically and biochemically characterized and gathered by molecular analysis into 68 operational taxonomic units (OTUs). They were further characterized for PGPR traits such as indole acetic acid production, siderophore production, calcium phosphate solubilization, and ACCD (1-amino-cyclopropane-1-carboxilatedeaminase) activity. These PGPR traits were used to infer functional PGPR diversity and cultivable bacterial OTU composition at different phenological moments. The different seasons induced shifts in the OTU composition linked to their PGPR traits. Summer was the phenological stage with the lowest microbial diversity and PGPR functions, whereas spring was the most active one. Among the PGPR traits analyzed, P-solubilizing rhizobacteria were harbored in the mycorrhizosphere during desert truffle fruiting in spring., (© 2022. The Author(s).) more...
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- 2022
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